Accelerating Neuroscience Research by Unifying Knowledge Representation and Analysis Through a Domain Specific Language

Informations projet

NeuroLang

N° de convention de subvention: 757672

DOI

10.3030/757672

Projet clôturé

Date de signature de la CE 17 Novembre 2017

Date de début 1 Mars 2018

Date de fin 29 Février 2024

Financé au titre de

• EXCELLENT SCIENCE - European Research Council (ERC)

Coût total

€ 1 497 045,00

Contribution de l’UE

€ 1 497 045,00

Coordonné par

INSTITUT NATIONAL DE RECHERCHE EN INFORMATIQUE ET AUTOMATIQUE
France

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Open Research Data Pilot (1)

Data Management Plan

This deliverable is composed of three axes: 1) Software deliverable: software developed by this action will be, after publication, release publicly under a licence appropriate for it's distribution. For this within the first 6 months we will set up a repository to distribute the software produced during this project. 2) Referencing of publicly available data used: Publicly available data used by this project will be referenced to allow others it's precise identification and the reproduction of results generated by this project. The datasets used during this project will be decided during the first 6 months such that they will be publicly accessible under reasonable conditions. 3) Distribution of generated data: Data generated by this project will be released in platforms such as OpenAire with a licence allowing it's use under reasonable conditions. Within the first 6 months the distribution channels and desired licence for generated data will be decided.

Publications

Conference proceedings (5)

Complex Coordinate-Based Meta-Analysis with Probabilistic Programming

Auteurs: Iovene, Valentin; Zanitti, Gaston; Wassermann, Demian
Publié dans: Proceedings of the AAAI Conference on Artificial Intelligence, 2021
Éditeur: Association for the Advancement of Artificial Intelligence
DOI: 10.1609/aaai.v35i1.16096

Verifying ontological knowledge through meta-analysis: Study cases of Pain and Consciousness

Auteurs: ZANITTI, Gaston; IOVENE, Valentin; WASSERMANN, Demian
Publié dans: https://hal.inria.fr/hal-03216621, Numéro 1, 2021
Éditeur: Organisation for Human Brain Mapping

Text to Brain: Predicting the Spatial Distribution of Neuroimaging Observations from Text Reports

Auteurs: Jérôme Dockès, Demian Wassermann, Russell Poldrack, Fabian Suchanek, Bertrand Thirion, Gaël Varoquaux
Publié dans: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part III, Numéro 11072, 2018, Page(s) 584-592, ISBN 978-3-030-00930-4
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-030-00931-1_67

A Novel Sulcal Hierarchy Based on Manually Labelled Sulci

Auteurs: Machlouzarides-Shalit, Antonia; Iovene, Valentin; Makris, Nikos; Wassermann, Demian
Publié dans: Organization for Human Brain Mapping, 2019
Éditeur: Organization for Human Brain Mapping

ADAVI: Automatic Dual Amortized Variational Inference Applied To Pyramidal Bayesian Models

Auteurs: Rouillard, Louis; Wassermann, Demian
Publié dans: International Conference in Leraning Representations, 2021
Éditeur: International Conference in Leraning Representations
DOI: 10.48550/arxiv.2106.12248

Peer reviewed articles (7)

Fine-grain atlases of functional modes for fMRI analysis

Auteurs: Kamalaker Dadi, Gaël Varoquaux, Antonia Machlouzarides-Shalit, Krzysztof J. Gorgolewski, Demian Wassermann, Bertrand Thirion, Arthur Mensch
Publié dans: NeuroImage, Numéro 221, 2020, Page(s) 117126, ISSN 1053-8119
Éditeur: Academic Press
DOI: 10.1016/j.neuroimage.2020.117126

Meta-Analysis of the Functional Neuroimaging Literature with Probabilistic Logic Programming

Auteurs: Majd Abdallah; Valentin Iovene; Gaston Zanitti; Demian Wassermann
Publié dans: Scientific Reports, Numéro 20452322, 2022, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1101/2022.02.25.481931

Functional gradients in the human lateral prefrontal cortex revealed by a comprehensive coordinate-based meta-analysis

Auteurs: Majd Abdallah; Gaston Zanitti; Valentin Iovene; Demian Wassermann
Publié dans: eLife, Numéro 2050084X, 2022, ISSN 2050-084X
Éditeur: eLife Sciences Publications
DOI: 10.7554/elife.76926

The visual word form area (VWFA) is part of both language and attention circuitry

Auteurs: Lang Chen, Demian Wassermann, Daniel A. Abrams, John Kochalka, Guillermo Gallardo-Diez, Vinod Menon
Publié dans: Nature Communications, Numéro 10/1, 2019, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-019-13634-z

A comparison of three fiber tract delineation methods and their impact on white matter analysis

Auteurs: Valerie J. Sydnor, Ana María Rivas-Grajales, Amanda E. Lyall, Fan Zhang, Sylvain Bouix, Sarina Karmacharya, Martha E. Shenton, Carl-Fredrik Westin, Nikos Makris, Demian Wassermann, Lauren J. O'Donnell, Marek Kubicki
Publié dans: NeuroImage, Numéro 178, 2018, Page(s) 318-331, ISSN 1053-8119
Éditeur: Academic Press
DOI: 10.1016/j.neuroimage.2018.05.044

Foundational number sense training gains are predicted by hippocampal–parietal circuits

Auteurs: Hyesang Chang; Lang Chen; Yuan Zhang; Ye Xie; Carlo de Los Angeles; Emma Adair; Gaston Zanitti; Demian Wassermann; Miriam Rosenberg-Lee; Vinod Menon
Publié dans: Journal of Neuroscience, Numéro 10, 2022, ISSN 0270-6474
Éditeur: Society for Neuroscience
DOI: 10.1523/jneurosci.1005-21.2022

Microstructural organization of human insula is linked to its macrofunctional circuitry and predicts cognitive control

Auteurs: Vinod Menon, Guillermo Gallardo, Mark A Pinsk, Van-Dang Nguyen, Jing-Rebecca Li, Weidong Cai, Demian Wassermann
Publié dans: eLife, Numéro 9, 2020, ISSN 2050-084X
Éditeur: eLife Sciences Publications
DOI: 10.7554/elife.53470

Other (9)

Probabilistic Logic for Coordinate-Based Meta-Analysis of Functional Segregation in the Brain

Auteurs: Majd Abdallah; Valentin Iovene; Demian Wassermann
Publié dans: Organization for Human Brain Mapping, 2022
Éditeur: Organization for Human Brain Mapping

PAVI: Plate-Amortized Variational Inference

Auteurs: Rouillard, Louis; Moreau, Thomas; Wassermann, Demian
Publié dans: ArXiv, 2022
Éditeur: ArXiV
DOI: 10.48550/arxiv.2206.05111

Bridging the Gap: From Neuroanatomical Knowledge to Tractography of Brain Pathways

Auteurs: Guillermo Gallardo, Demian Wassermann, Alfred Anwander
Publié dans: BioRxiv, 2020
Éditeur: BioRxiv
DOI: 10.1101/2020.08.01.232116

Probabilistic Programming in neurolang: Bridging the Gap Between Cognitive Science and Statistical Modeling

Auteurs: Valentin Iovene, Demian Wassermann
Publié dans: Organisation for Human Brain Mapping, Numéro Yearly, 2020
Éditeur: Organisation for Human Brain Mapping

Sensing Von Economo Neurons in the Insula with Multi-shell Diffusion MRI

Auteurs: Wassermann , Demian; Nguyen , Dang Van; Gallardo , Guillermo; Li , Jing-Rebecca; Cai , Weidong; Menon , Vinod
Publié dans: International Society for Magnetic Resonance in Medicine, Numéro 1, 2019
Éditeur: International Society for Magnetic Resonance in Medicine

A Novel Sulcal Hierarchy Based on Manually Labelled Sulci

Auteurs: Antonia Machlouzarides-Shalit, Valentin Iovene, Nikos Makris, Demian Wassermann
Publié dans: Organization for Human Brain Mapping, Numéro Yearly, 2019
Éditeur: Organization for Human Brain Mapping

Quantitative modeling links in vivo microstructural and macrofunctional organization of human and macaque insular cortex, and predicts cognitive control abilities

Auteurs: Vinod Menon, Gallardo Guillermo, Mark A. Pinsk, Van-Dang Nguyen, Jing-Rebecca Li, Weidong Cai, Demian Wassermann
Publié dans: BioRxiv, 2019
Éditeur: BioRxiv
DOI: 10.1101/662601

Scalable Query Answering under Uncertainty to Neuroscientific Ontological Knowledge: The NeuroLang Approach

Auteurs: Zanitti, Gaston; Soto, Yamil; Iovene, Valentin; Martinez, Maria Vanina; Rodriguez, Ricardo; Simari, Gerardo; Wassermann, Demian
Publié dans: ArXiv, 2022
Éditeur: ArXiv
DOI: 10.48550/arxiv.2202.11333

NeuroLang: Representing Neuroanatomy with Sulcus-Specific Queries

Auteurs: Antonia Machlouzarides-Shalit, Nikos Makris, Gaston Zanitti, Valentin Iovene, Guillaume Lemaitre, Guillaume Favelier, Demian Wassermann
Publié dans: Organization for the Human Brain Mapping, Numéro Yearly, 2020
Éditeur: Organisation for the Human Brain Mapping

Thesis and dissertations (4)

Bridging Simulation-based Inference and Hierarchical Modeling : Applications in Neuroscience

Auteurs: Louis Rouillard, Demian Wassermann
Publié dans: 2024
Éditeur: Inria

Development of subject-specific representations of neuroanatomy via a domain-specific language

Auteurs: Antonia Machlouzarides-Shalit, Demian Wassermann
Publié dans: 2020
Éditeur: Inria

Development of a probabilistic domain-specific language for brain connectivity including heterogeneous knowledge representation

Auteurs: Gaston Ezequiel Zanitti, Demian Wassermann
Publié dans: 2023
Éditeur: Inria

Answering meta-analytic questions on heterogeneous and uncertain neuroscientific data with probabilistic logic programming

Auteurs: Valentin Iovene, Demian Wassermann
Publié dans: 2021
Éditeur: Inria