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MicroRNA functions in single cells

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Publications

agoTRIBE detects miRNA-target interactions transcriptome-wide in single cells

Author(s): Vaishnovi Sekar, Emilio Mármol-Sánchez, Panagiotis Kalogeropoulos, Laura Stanicek, Eduardo A. Sagredo, Evangelos Doukoumopoulos, Franziska Bonath, Inna Biryukova, Marc R. Friedländer
Published in: bioRxiv, 2022
Publisher: bioRxiv
DOI: 10.1101/2022.08.10.503472

MirGeneDB 2.1: toward a complete sampling of all major animal phyla.

Author(s): "Fromm, Bastian; Hø ye, Eirik; Domanska, Diana; Zhong, Xiangfu; Aparicio-Puerta, Ernesto; Ovchinnikov, Vladimir; Umu, Sinan U; Chabot, Peter J; Kang, Wenjing; Aslanzadeh, Morteza; Tarbier, Marcel; Má rmol-Sá nchez, Emilio; Urgese, Gianvito; Johansen, Morten; Hovig, Eivind; Hackenberg, Michael; Friedlä nder, Marc R; Peterson, Kevin J"
Published in: Nucleic Acids Research, 13624962, 2022, ISSN 1362-4962
Publisher: Oxford academic
DOI: 10.1093/nar/gkab1101

Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells

Author(s): Marcel Tarbier, Sebastian D. Mackowiak, João Frade, Silvina Catuara-Solarz, Inna Biryukova, Eleni Gelali, Diego Bárcena Menéndez, Luis Zapata, Stephan Ossowski, Magda Bienko, Caroline J. Gallant, Marc R. Friedländer
Published in: Nature Communications, 11/1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-19011-5

MapToCleave: high-throughput profiling of microRNA biogenesis in living cells

Author(s): Wenjing Kang; Bastian Fromm; Anna J.S. Houben; Eirik Høye; Daniela Bezdan; Carme Arnan; Kim Thrane; Michaela Asp; Rory Johnson; Inna Biryukova; Marc R. Friedländer
Published in: Cell Reports, 22111247, 2021, ISSN 2211-1247
Publisher: Cell Press
DOI: 10.48350/162005

The SWI/SNF subunit BRG1 affects alternative splicing by changing RNA binding factor interactions with nascent RNA

Author(s): Antoni Gañez-Zapater; Sebastian D. Mackowiak; Yuan Guo; Marcel Tarbier; Antonio Jordán-Pla; Marc R. Friedländer; Neus Visa; Ann-Kristin Östlund Farrants
Published in: Molecular Genetics and Genomics, 16174615, 2022, ISSN 1617-4615
Publisher: Springer Verlag
DOI: 10.1007/s00438-022-01863-9

Combined mRNA and protein single cell analysis in a dynamic cellular system using SPARC

Author(s): Johan Reimegård; Marcus Danielsson; Marcel Tarbier; Jens Schuster; Sathishkumar Baskaran; Styliani Panagiotou; Niklas Dahl; Marc R. Friedländer; Caroline J. Gallant
Published in: Nature Communications Biology, 23993642, 2021, ISSN 2399-3642
Publisher: NPG
DOI: 10.1038/s42003-021-02142-w

Cytoplasmic protein misfolding titrates Hsp70 to activate nuclear Hsf1

Author(s): Anna E Masser; Wenjing Kang; Joydeep Roy; Jayasankar Mohanakrishnan Kaimal; Jany Quintana-Cordero; Marc R Friedländer; Claes Andréasson
Published in: eLife, 2050084X, 2019, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.47791