DNA-Based Modular Nanorobotics

Deliverables

Perspective paper on Road Map for biomolecular robotics and joint paper on ethics of nanorobots.

Perspective paper on Road Map for biomolecular robotics and joint paper on ethics of nanorobots

Recruitment of ESRs
Personal Career Development Plans (PCDP)

Data management plan based on the principles of open science as outlined in the OpenAIRE project.

Publications

Protein-Induced Fluorescence Enhancement and Quenching in a Homogeneous DNA-Based Assay for Rapid Detection of Small-Molecule Drugs in Human Plasma

Author(s): Line D. F. Nielsen; Malthe Hansen-Bruhn; Minke A. D. Nijenhuis; Kurt V. Gothelf
Published in: ACS Sens, Issue 3, 2022, Page(s) 856-865, ISSN 2379-3694
Publisher: ACS publications
DOI: 10.1021/acssensors.1c02642

Visible wavelength spectral tuning of absorption and circular dichroism of DNA-assembled Au/Ag core–shell nanorod assemblies

Author(s): Mihir Dass; Lilli Kuen; Gregor Posnjak; Sven Burger; Tim Liedl
Published in: Material advnaces, Issue 3, 2022, Page(s) 3438-3445, ISSN 2633-5409
Publisher: Royal society of chemistry
DOI: 10.1039/d1ma01211h

DNA Origami Nano-Sheets and Nano-Rods Alter the Orientational Order in a Lyotropic Chromonic Liquid Crystal

Author(s): Bingru Zhang, Kevin Martens, Luisa Kneer, Timon Funck, Linh Nguyen, Ricarda Berger, Mihir Dass, Susanne Kempter, Jürgen Schmidtke, Tim Liedl, Heinz-S. Kitzerow
Published in: Nanomaterials, Issue 10/9, 2020, Page(s) 1695, ISSN 2079-4991
Publisher: MDPI
DOI: 10.3390/nano10091695

Strategies for Constructing and Operating DNA Origami Linear Actuators

Author(s): Erik Benson, Rafael Carrascosa Marzo, Jonathan Bath, Andrew J. Turberfield
Published in: Small, Issue 17/20, 2021, Page(s) 2007704, ISSN 1613-6810
Publisher: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/smll.202007704

Design and simulation of DNA, RNA and hybrid protein–nucleic acid nanostructures with oxView

Author(s): Joakim Bohlin, Michael Matthies, Erik Poppleton, Jonah Procyk, Aatmik Mallya, Hao Yan & Petr Šulc
Published in: Narure protocols, 2022, ISSN 1750-2799
Publisher: Springer nature
DOI: 10.1038/s41596-022-00688-5

Programmable Cell-Free Transcriptional Switches for Antibody Detection

Author(s): Aitor Patino Diaz; Sara Bracaglia; Simona Ranallo; Tania Patino; Alessandro Porchetta; Francesco Ricci
Published in: JACS, Issue 144, 2022, Page(s) 5820–5826, ISSN 0002-7863
Publisher: American Chemical Society
DOI: 10.1021/jacs.1c11706

Conjugation of chemical handles and functional moieties to DNA during solid phase synthesis with sulfonyl azides

Author(s): Angel Santorelli; Kurt V Gothelf
Published in: Nucleic acid research, Issue 03051048, 2022, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkac566

Programmable cell-free transcriptional switches for antibodies detection

Author(s): Aitor Patiño Diaz; Sara Bracaglia; Simona Ranallo; Tania Patiño; Alessandro Porchetta; Francesco Ricci
Published in: Journal of American Chemical Society, Issue 2, 2022, Page(s) 5820–5826, ISSN 0002-7863
Publisher: American Chemical Society
DOI: 10.33774/chemrxiv-2021-swkv7

DNA Origami-Enabled Plasmonic Sensing

Author(s): Mihir Dass, Fatih N. Gür, Karol Kołątaj, Maximilian J. Urban, Tim Liedl
Published in: The Journal of Physical Chemistry C, Issue 125/11, 2021, Page(s) 5969-5981, ISSN 1932-7447
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcc.0c11238

Clustering of death receptor for apoptosis using nanoscale patterns of peptides

Author(s): Yang Wang; Igor Baars; Ferenc Fördös; Björn Högberg
Published in: ACS Nano, Issue 2, 2021, Page(s) 9614–9626, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1101/2020.11.16.359729

DNA Origami Meets Bottom-Up Nanopatterning

Author(s): Irina V. Martynenko; Veronika Ruider; Mihir Dass; Tim Liedl; Philipp C. Nickels
Published in: ACS NANO, Issue 1, 2021, Page(s) 10769–10774, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1021/acsnano.1c04297

Chiral Assembly of Gold–Silver Core–Shell Plasmonic Nanorods on DNA Origami with Strong Optical Activity

Author(s): Linh Nguyen, Mihir Dass, Martina F. Ober, Lucas V. Besteiro, Zhiming M. Wang, Bert Nickel, Alexander O. Govorov, Tim Liedl, Amelie Heuer-Jungemann
Published in: ACS Nano, Issue 14/6, 2020, Page(s) 7454-7461, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1021/acsnano.0c03127

Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation

Author(s): Erik Poppleton, Joakim Bohlin, Michael Matthies, Shuchi Sharma, Fei Zhang, Petr Šulc
Published in: Nucleic Acids Research, 2020, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkaa417

Protein‐Templated Reactions Using DNA‐Antibody Conjugates

Author(s): Lorena Baranda Pellejero; Minke A. D. Nijenhuis; Francesco Ricci; Kurt V. Gothelf
Published in: small, Issue 5, 2022, ISSN 1613-6829
Publisher: Wiley
DOI: 10.1002/smll.202200971

Programming DNA‐Based Systems through Effective Molarity Enforced by Biomolecular Confinement

Author(s): Marianna Rossetti, Alessandro Bertucci, Tania Patiño, Lorena Baranda, Alessandro Porchetta
Published in: Chemistry – A European Journal, Issue 26/44, 2020, Page(s) 9826-9834, ISSN 0947-6539
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/chem.202001660

DNA origami

Author(s): Swarup Dey, Chunhai Fan, Kurt V. Gothelf, Jiang Li, Chenxiang Lin, Longfei Liu, Na Liu, Minke A. Nijenhuis, Barbara Saccà, Friedrich C. Simmel, Hao Yan, Pengfei Zhan
Published in: Nat Rev Methods Primers, 2021, ISSN 2662-8449
Publisher: Springer Nature
DOI: 10.1038/s43586-020-00009-8

A DNA molecular printer capable of programmable positioning and patterning in two dimensions

Author(s): Erik Benson, Rafael Carrascosa Marzo, Jonathan Bath and Andrew J. Turberfield
Published in: Science Robotics, Issue 24709476, 2022, ISSN 2470-9476
Publisher: AAAS
DOI: 10.1126/scirobotics.abn5459

Designing the self-assembly of arbitrary shapes using minimal complexity building blocks

Author(s): Joakim Bohlin, Andrew J. Turberfield, Ard A. Louis, Petr Šulc
Published in: arXiv, 2022
Publisher: arXiv
DOI: 10.48550/arxiv.2207.06954

Regulating the dynamic folding of a DNA hairpin at the expense of a small, molecular fuel

Author(s): Michele Stasi; Alba Monferrer i Sureda; Leon Babl; Sreekar Wunnava; Christina F. Dirscherl; Dieter Braun; Petra Schwille; Hendrik Dietz; Job Boekhoven
Published in: ChemRxiv, 2021, ISSN 2573-2293
Publisher: ChemRxiv
DOI: 10.33774/chemrxiv-2021-w299m

Deliverables

Publications

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