DNA-Based Modular Nanorobotics

Livrables

Perspective paper on Road Map for biomolecular robotics and joint paper on ethics of nanorobots.

Perspective paper on Road Map for biomolecular robotics and joint paper on ethics of nanorobots

Recruitment of ESRs
Personal Career Development Plans (PCDP)

Data management plan based on the principles of open science as outlined in the OpenAIRE project.

Publications

Protein-Induced Fluorescence Enhancement and Quenching in a Homogeneous DNA-Based Assay for Rapid Detection of Small-Molecule Drugs in Human Plasma

Auteurs: Line D. F. Nielsen; Malthe Hansen-Bruhn; Minke A. D. Nijenhuis; Kurt V. Gothelf
Publié dans: ACS Sens, Numéro 3, 2022, Page(s) 856-865, ISSN 2379-3694
Éditeur: ACS publications
DOI: 10.1021/acssensors.1c02642

Visible wavelength spectral tuning of absorption and circular dichroism of DNA-assembled Au/Ag core–shell nanorod assemblies

Auteurs: Mihir Dass; Lilli Kuen; Gregor Posnjak; Sven Burger; Tim Liedl
Publié dans: Material advnaces, Numéro 3, 2022, Page(s) 3438-3445, ISSN 2633-5409
Éditeur: Royal society of chemistry
DOI: 10.1039/d1ma01211h

DNA Origami Nano-Sheets and Nano-Rods Alter the Orientational Order in a Lyotropic Chromonic Liquid Crystal

Auteurs: Bingru Zhang, Kevin Martens, Luisa Kneer, Timon Funck, Linh Nguyen, Ricarda Berger, Mihir Dass, Susanne Kempter, Jürgen Schmidtke, Tim Liedl, Heinz-S. Kitzerow
Publié dans: Nanomaterials, Numéro 10/9, 2020, Page(s) 1695, ISSN 2079-4991
Éditeur: MDPI
DOI: 10.3390/nano10091695

Strategies for Constructing and Operating DNA Origami Linear Actuators

Auteurs: Erik Benson, Rafael Carrascosa Marzo, Jonathan Bath, Andrew J. Turberfield
Publié dans: Small, Numéro 17/20, 2021, Page(s) 2007704, ISSN 1613-6810
Éditeur: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/smll.202007704

Design and simulation of DNA, RNA and hybrid protein–nucleic acid nanostructures with oxView

Auteurs: Joakim Bohlin, Michael Matthies, Erik Poppleton, Jonah Procyk, Aatmik Mallya, Hao Yan & Petr Šulc
Publié dans: Narure protocols, 2022, ISSN 1750-2799
Éditeur: Springer nature
DOI: 10.1038/s41596-022-00688-5

Programmable Cell-Free Transcriptional Switches for Antibody Detection

Auteurs: Aitor Patino Diaz; Sara Bracaglia; Simona Ranallo; Tania Patino; Alessandro Porchetta; Francesco Ricci
Publié dans: JACS, Numéro 144, 2022, Page(s) 5820–5826, ISSN 0002-7863
Éditeur: American Chemical Society
DOI: 10.1021/jacs.1c11706

Conjugation of chemical handles and functional moieties to DNA during solid phase synthesis with sulfonyl azides

Auteurs: Angel Santorelli; Kurt V Gothelf
Publié dans: Nucleic acid research, Numéro 03051048, 2022, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkac566

Programmable cell-free transcriptional switches for antibodies detection

Auteurs: Aitor Patiño Diaz; Sara Bracaglia; Simona Ranallo; Tania Patiño; Alessandro Porchetta; Francesco Ricci
Publié dans: Journal of American Chemical Society, Numéro 2, 2022, Page(s) 5820–5826, ISSN 0002-7863
Éditeur: American Chemical Society
DOI: 10.33774/chemrxiv-2021-swkv7

DNA Origami-Enabled Plasmonic Sensing

Auteurs: Mihir Dass, Fatih N. Gür, Karol Kołątaj, Maximilian J. Urban, Tim Liedl
Publié dans: The Journal of Physical Chemistry C, Numéro 125/11, 2021, Page(s) 5969-5981, ISSN 1932-7447
Éditeur: American Chemical Society
DOI: 10.1021/acs.jpcc.0c11238

Clustering of death receptor for apoptosis using nanoscale patterns of peptides

Auteurs: Yang Wang; Igor Baars; Ferenc Fördös; Björn Högberg
Publié dans: ACS Nano, Numéro 2, 2021, Page(s) 9614–9626, ISSN 1936-0851
Éditeur: American Chemical Society
DOI: 10.1101/2020.11.16.359729

DNA Origami Meets Bottom-Up Nanopatterning

Auteurs: Irina V. Martynenko; Veronika Ruider; Mihir Dass; Tim Liedl; Philipp C. Nickels
Publié dans: ACS NANO, Numéro 1, 2021, Page(s) 10769–10774, ISSN 1936-0851
Éditeur: American Chemical Society
DOI: 10.1021/acsnano.1c04297

Chiral Assembly of Gold–Silver Core–Shell Plasmonic Nanorods on DNA Origami with Strong Optical Activity

Auteurs: Linh Nguyen, Mihir Dass, Martina F. Ober, Lucas V. Besteiro, Zhiming M. Wang, Bert Nickel, Alexander O. Govorov, Tim Liedl, Amelie Heuer-Jungemann
Publié dans: ACS Nano, Numéro 14/6, 2020, Page(s) 7454-7461, ISSN 1936-0851
Éditeur: American Chemical Society
DOI: 10.1021/acsnano.0c03127

Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation

Auteurs: Erik Poppleton, Joakim Bohlin, Michael Matthies, Shuchi Sharma, Fei Zhang, Petr Šulc
Publié dans: Nucleic Acids Research, 2020, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkaa417

Protein‐Templated Reactions Using DNA‐Antibody Conjugates

Auteurs: Lorena Baranda Pellejero; Minke A. D. Nijenhuis; Francesco Ricci; Kurt V. Gothelf
Publié dans: small, Numéro 5, 2022, ISSN 1613-6829
Éditeur: Wiley
DOI: 10.1002/smll.202200971

Programming DNA‐Based Systems through Effective Molarity Enforced by Biomolecular Confinement

Auteurs: Marianna Rossetti, Alessandro Bertucci, Tania Patiño, Lorena Baranda, Alessandro Porchetta
Publié dans: Chemistry – A European Journal, Numéro 26/44, 2020, Page(s) 9826-9834, ISSN 0947-6539
Éditeur: John Wiley & Sons Ltd.
DOI: 10.1002/chem.202001660

DNA origami

Auteurs: Swarup Dey, Chunhai Fan, Kurt V. Gothelf, Jiang Li, Chenxiang Lin, Longfei Liu, Na Liu, Minke A. Nijenhuis, Barbara Saccà, Friedrich C. Simmel, Hao Yan, Pengfei Zhan
Publié dans: Nat Rev Methods Primers, 2021, ISSN 2662-8449
Éditeur: Springer Nature
DOI: 10.1038/s43586-020-00009-8

A DNA molecular printer capable of programmable positioning and patterning in two dimensions

Auteurs: Erik Benson, Rafael Carrascosa Marzo, Jonathan Bath and Andrew J. Turberfield
Publié dans: Science Robotics, Numéro 24709476, 2022, ISSN 2470-9476
Éditeur: AAAS
DOI: 10.1126/scirobotics.abn5459

Designing the self-assembly of arbitrary shapes using minimal complexity building blocks

Auteurs: Joakim Bohlin, Andrew J. Turberfield, Ard A. Louis, Petr Šulc
Publié dans: arXiv, 2022
Éditeur: arXiv
DOI: 10.48550/arxiv.2207.06954

Regulating the dynamic folding of a DNA hairpin at the expense of a small, molecular fuel

Auteurs: Michele Stasi; Alba Monferrer i Sureda; Leon Babl; Sreekar Wunnava; Christina F. Dirscherl; Dieter Braun; Petra Schwille; Hendrik Dietz; Job Boekhoven
Publié dans: ChemRxiv, 2021, ISSN 2573-2293
Éditeur: ChemRxiv
DOI: 10.33774/chemrxiv-2021-w299m

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