Animal evolution from a cell type perspective: multidisciplinary training in single-cell genomics, evo-devo and in science outreach | EvoCELL | Proyecto | Resultados | H2020 | CORDIS

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Final exhibition

Combined virtual and real final exhibition

Practical Course II

Practical Course II - Evolutionary Biology & Data Analysis: Bioinformatic and statistical issues; Alternative doctorate careers I

Practical Course I

Practical Course I - Introduction and Data Acquisition: Next generation sequencing, single-cell sequencing approaches

Practical Course III

Practical Course III Evolutionary Developmental Biology and Neurobiology of Marine Models Alternative doctorate careers III

Website

Set up the project’s communication website

Best practice catalogue

Best practice catalogue on presentation techniques and methods used in a virtual exhibition

Dissociation and cell (nucleus) capture protocols

Dissociation and cell nucleus capture protocols for diverse organisms

List of supporting material for outreach

List of supporting material being produced for outreach schools museum visitors etc

Publicaciones

Developmental toxicity of plastic leachates on the sea urchin Paracentrotus lividus

Autores: Flora Rendell-Bhatti, Periklis Paganos, Anna Pouch, Christopher Mitchell, Salvatore D’Aniello, Brendan J. Godley, Ksenia Pazdro, Maria Ina Arnone, Eva Jimenez-Guri
Publicado en: Environmental Pollution, Edición 269, 2021, Página(s) 115744, ISSN 0269-7491
Editor: Pergamon Press Ltd.
DOI: 10.1016/j.envpol.2020.115744

"Panarthropod tiptop/teashirt and spalt orthologs and their potential role as ""trunk""-selector genes."

Autores: Brenda I. Medina-Jiménez; Graham E. Budd; Ralf Janssen
Publicado en: EvoDevo, Edición 6, 2021, ISSN 2041-9139
Editor: BioMed Central
DOI: 10.1186/s13227-021-00177-y

Crustacean leg regeneration restores complex microanatomy and cell diversity

Autores: Almazán A, Çevrim C, Musser JM, Averof M, Paris M
Publicado en: Science Advances, 2022, ISSN 2375-2548
Editor: AAAS
DOI: 10.1126/sciadv.abn9823

Post-metamorphic skeletal growth in the sea urchin Paracentrotus lividus and implications for body plan evolution

Autores: Jeffrey R. Thompson, Periklis Paganos, Giovanna Benvenuto, Maria Ina Arnone, Paola Oliveri
Publicado en: EvoDevo, Edición 12/1, 2021, ISSN 2041-9139
Editor: BioMed Central
DOI: 10.1186/s13227-021-00174-1

FISH for All: A Fast and Efficient Fluorescent In situ Hybridization (FISH) Protocol for Marine Embryos and Larvae

Autores: Periklis Paganos, Filomena Caccavale, Claudia La Vecchia, Enrico D’Aniello, Salvatore D’Aniello and Maria Ina Arnone
Publicado en: Frontiers in Physiology, 2022, ISSN 1664-042X
Editor: Frontiers Research Foundation
DOI: 10.3389/fphys.2022.878062

New Neuronal Subtypes With a “Pre-Pancreatic” Signature in the Sea Urchin Stongylocentrotus purpuratus

Autores: Margherita Perillo, Periklis Paganos, Teresa Mattiello, Maria Cocurullo, Paola Oliveri, Maria I. Arnone
Publicado en: Frontiers in Endocrinology, Edición 9, 2018, ISSN 1664-2392
Editor: Frontiers
DOI: 10.3389/fendo.2018.00650

Neuronal coordination of motile cilia in locomotion and feeding

Autores: Milena Marinković, Jürgen Berger, Gáspár Jékely
Publicado en: Philosophical Transactions of the Royal Society B: Biological Sciences, Edición 375/1792, 2019, Página(s) 20190165, ISSN 0962-8436
Editor: Royal Society of London
DOI: 10.1098/rstb.2019.0165

Molecular and Functional Characterization of the Somatic PIWIL1/piRNA Pathway in Colorectal Cancer Cells

Autores: Assunta Sellitto, Konstantinos Geles, Ylenia D’Agostino, Marisa Conte, Elena Alexandrova, Domenico Rocco, Giovanni Nassa, Giorgio Giurato, Roberta Tarallo, Alessandro Weisz, Francesca Rizzo
Publicado en: Cells, Edición 8/11, 2019, Página(s) 1390, ISSN 2073-4409
Editor: MDPI AG
DOI: 10.3390/cells8111390

The Nereid on the rise: Platynereis as a model system

Autores: B. Duygu Özpolat, Nadine Randel, Elizabeth A. Williams, Luis Alberto Bezares-Calderón, Gabriele Andreatta, Guillaume Balavoine, Paola Y. Bertucci, David E. K. Ferrier, Maria Cristina Gambi, Eve Gazave, Mette Handberg-Thorsager, Jörg Hardege, Cameron Hird, Yu-Wen Hsieh, Jerome Hui, Kevin Nzumbi Mutemi, Stephan Q. Schneider, Oleg Simakov, Hernando M. Vergara, Michel Vervoort, Gáspár Jékely, Kr
Publicado en: EvoDevo, Edición 12/1, 2021, ISSN 2041-9139
Editor: BioMed Central
DOI: 10.1186/s13227-021-00180-3

Whole-animal multiplexed single-cell RNA-seq reveals transcriptional shifts across Clytia medusa cell types.

Autores: Tara Chari, Brandon Weissbourd, Jase Gehring, Anna Ferraioli, Lucas Leclère, Makenna Herl, Fan Gao, Sandra Chevalier, Richard R. Copley, Evelyn Houliston, David J. Anderson, Lior Pachter.
Publicado en: SCIENCE ADVANCES, 2021, ISSN 2375-2548
Editor: American Association for the Advancement of Science.
DOI: 10.1126/sciadv.abh1683

Whole-body integration of gene expression and single-cell morphology

Autores: Hernando M. Vergara, Constantin Pape, Kimberly I. Meechan, Valentyna Zinchenko, Christel Genoud, Adrian A. Wanner, Kevin Nzumbi Mutemi, Benjamin Titze, Rachel M. Templin, Paola Y. Bertucci, Oleg Simakov, Wiebke Dürichen, Pedro Machado, Emily L. Savage, Lothar Schermelleh, Yannick Schwab, Rainer W. Friedrich, Anna Kreshuk, Christian Tischer, Detlev Arendt
Publicado en: Cell, Edición 184/18, 2021, Página(s) 4819-4837.e22, ISSN 0092-8674
Editor: Cell Press
DOI: 10.1016/j.cell.2021.07.017

Distinct gene expression dynamics in developing and regenerating limbs

Autores: C. Sinigaglia, A. Almazán, M. Lebel, M, Sémon. B. Gillet, S. Hughes, E. Edsinger, M. Averof. and M. Paris
Publicado en: PNAS, 2022, ISSN 1091-6490
Editor: National Academy of Science
DOI: 10.1073/pnas.2119297119

Comparative Neurobiology of Biogenic Amines in Animal Models in Deuterostomes

Autores: Enrico D’Aniello, Periklis Paganos, Evgeniya Anishchenko, Salvatore D’Aniello, Maria Ina Arnone
Publicado en: Frontiers in Ecology and Evolution, Edición 8, 2020, ISSN 2296-701X
Editor: Frontiers
DOI: 10.3389/fevo.2020.587036

Single cell RNA sequencing of the Strongylocentrotus purpuratus larva reveals the blueprint of major cell types and nervous system of a non-chordate deuterostome.

Autores: Periklis Paganos; Danila Voronov; Jacob M. Musser; Detlev Arendt; Maria Ina Arnone
Publicado en: elife, Edición 9, 2021, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.70416

Coup-TF: A maternal factor essential for differentiation along the embryonic axes in the sea urchin Paracentrotus lividus

Autores: Ioannis Tsironis, Periklis Paganos, Georgia Gouvi, Panagiotis Tsimpos, Andriana Stamopoulou, Maria Ina Arnone, Constantin N. Flytzanis
Publicado en: Developmental Biology, Edición 475, 2021, Página(s) 131-144, ISSN 0012-1606
Editor: Academic Press
DOI: 10.1016/j.ydbio.2020.12.012

A chelicerate Wnt gene expression atlas: novel insights into the complexity of arthropod Wnt-patterning.

Autores: Ralf Janssen; Matthias Pechmann; Natascha Turetzek
Publicado en: EvoDevo, Edición 4, 2021, ISSN 2041-9139
Editor: BioMed Central
DOI: 10.1186/s13227-021-00182-1

Cell Type Diversity During Sea Urchin Development: A Single Cell Approach to Reveal Different Neuronal Types and Their Evolution

Autores: Paganos, Periklis
Publicado en: 2021
Editor: do not aply
DOI: 10.21954/ou.ro.00012e56

Single-cell RNA sequencing as a tool to study panarthropod evolution (Licentiate thesis, comprehensive summary)

Autores: Brenda Irene Medina Jimenez
Publicado en: 2021
Editor: Diva

WIND (Workflow for pIRNAs aNd beyonD): a strategy for in-depth analysis of small RNA-seq data

Autores: Konstantinos Geles, Domenico Palumbo, Assunta Sellitto, Giorgio Giurato, Eleonora Cianflone, Fabiola Marino, Daniele Torella, Valeria Mirici Cappa, Giovanni Nassa, Roberta Tarallo, Alessandro Weisz, Francesca Rizzo
Publicado en: F1000Research, Edición 10, 2021, Página(s) 1, ISSN 2046-1402
Editor: F1000 Research Ltd.
DOI: 10.12688/f1000research.27868.3

Reconstructing the ancestral vertebrate brain using a lamprey neural cell type atlas

Autores: Francesco Lamanna, Francisca Hervas-Sotomayor, A. Phillip Oel, David Jandzik, Daniel Sobrido-Cameán, Megan L. Martik, Stephen A. Green, Thoomke Brüning, Katharina Mößinger, Julia Schmidt, Celine Schneider, Mari Sepp, Florent Murat, Jeramiah J. Smith, Marianne E. Bronner, María Celina Rodicio, Antón Barreiro-Iglesias, Daniel M. Medeiros, Detlev Arendt, Henrik Kaessmann
Publicado en: Biorxiv, 2022, ISSN 2692-8205
Editor: Cold Spring Harbor Laboratory
DOI: 10.1101/2022.02.28.482278

Methodology for Whole Mount and Fluorescent RNA In Situ Hybridization in Echinoderms: Single, Double, and Beyond

Autores: Margherita Perillo, Periklis Paganos, Maxwell Spurrell, Maria I. Arnone, Gary M. Wessel
Publicado en: Developmental Biology of the Sea Urchin and Other Marine Invertebrates - Methods and Protocols, Edición 2219, 2021, Página(s) 195-216, ISBN 978-1-0716-0973-6
Editor: Springer US
DOI: 10.1007/978-1-0716-0974-3_12

Conjuntos de datos

Exploring cell diversity and fidelity in crustacean limb regeneration using single-nucleus RNA sequencing

Autores: Almazán Alba
Publicado en: Zenodo

Single-cell atlases of two lophotrochozoan larvae highlight their complex evolutionary histories

Autores: Piovani, Laura; Leite, Daniel J.; Guerra, Luis Alfonso Yañez; Simpson, Fraser; Musser, Jacob M.; Salvador-Martínez, Irepan; Marlétaz, Ferdinand; Jékely, Gáspár; Telford, Maximilian J.
Publicado en: Zenodo

Sp 3dpf scRNA-Seq

Autores: Arnone, Maria Immacolata; Paganos, Periklis; Voronov, Danila; Musser, Jacob; Arendt, Detlev
Publicado en: Dryad

Supplementary information for 'Distinct gene expression dynamics in developing and regenerating crustacean limbs', by Sinigaglia et al.

Autores: Chiara Sinigaglia; Alba Almazán; Marie Lebel; Marie Sémon; Benjamin Gillet; Sandrine Hughes; Eric Edsinger; Michalis Averof; Mathilde Paris
Publicado en: Zenodo

Supplementary information for 'Crustacean leg regeneration restores complex microanatomy and cell diversity' by Almazán, Çevrim et al.

Autores: Almazán, Alba; Çevrim, Çağrı; Musser, Jacob M.; Averof, Michalis; Paris, Mathilde
Publicado en: Zenodo

Software

mobie/prospr-vc-generation:

Autores: Zinchenko, Valentyna; HernandoMV
Editor: Zenodo
DOI: 10.5281/zenodo.4899523; 10.5281/zenodo.4899522

Dissertation Konstantinos Geles scripts

Autores: Konstantinos Geles
Editor: Zenodo
DOI: 10.5281/zenodo.6973594; 10.5281/zenodo.6973595

mobie/platybrowser-datasets:

Autores: Pape, Constantin; Meechan, Kimberly; Zinchenko, Valentyna; Tischer, Christian; HernandoMV; FynnBe; HernyMV
Editor: Zenodo
DOI: 10.5281/zenodo.4899526; 10.5281/zenodo.4899527

ConYel/wind: Second release of WIND, version 1.0.1

Autores: Konstantinos Geles; Domenico Palumbo; Assunta Sellitto; Giorgio Giurato; Eleonora Cianflone; Fabiola Marino; Daniele Torella; Valeria Mirici Cappa; Giovanni Nassa; Roberta Tarallo; Alessandro Weisz; Francesca Rizzo
Editor: Zenodo
DOI: 10.5281/zenodo.4727863

PlatyBrowser: Fiji plugin for browsing gene expression and ultrastructure of platynereis

Autores: Tischer, Christian
Editor: Zenodo
DOI: 10.5281/zenodo.2602755; 10.5281/zenodo.2602754

ConYel/wind: piRNA predicted targets

Autores: ConYel; Palumbo, Domenico
Editor: Zenodo
DOI: 10.5281/zenodo.6603418; 10.5281/zenodo.4289908

Otros productos de investigación

Single-cell RNA sequencing as a tool to study panarthropod evolution

Autores: Medina Jimenez, Brenda Irene
Publicado en: Uppsala universitet, Paleobiologi

Publicaciones

Conjuntos de datos

Software

Otros productos de investigación

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