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Characterizing the fitness landscape on population and global scales

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Publications

Large multiple sequence alignments with a root-to-leaf regressive method

Author(s): Edgar Garriga, Paolo Di Tommaso, Cedrik Magis, Ionas Erb, Leila Mansouri, Athanasios Baltzis, Hafid Laayouni, Fyodor Kondrashov, Evan Floden, Cedric Notredame
Published in: Nature Biotechnology, 37/12, 2019, Page(s) 1466-1470, ISSN 1087-0156
Publisher: Nature Publishing Group
DOI: 10.1038/s41587-019-0333-6

Relation between the number of peaks and the number of reciprocal sign epistatic interactions

Author(s): Raimundo Saona; Fyodor A. Kondrashov; Ksenia A. Khudiakova
Published in: Bull Math Biol, 84, 2022, Page(s) 74, ISSN 0092-8240
Publisher: Academic Press
DOI: 10.1007/s11538-022-01029-z

Plants with genetically encoded autoluminescence

Author(s): Tatiana Mitiouchkina, Alexander S. Mishin, Louisa Gonzalez Somermeyer, Nadezhda M. Markina, Tatiana V. Chepurnyh, Elena B. Guglya, Tatiana A. Karataeva, Kseniia A. Palkina, Ekaterina S. Shakhova, Liliia I. Fakhranurova, Sofia V. Chekova, Aleksandra S. Tsarkova, Yaroslav V. Golubev, Vadim V. Negrebetsky, Sergey A. Dolgushin, Pavel V. Shalaev, Dmitry Shlykov, Olesya A. Melnik, Victoria O. Shipunova,
Published in: Nature Biotechnology, 38/8, 2020, Page(s) 944-946, ISSN 1087-0156
Publisher: Nature Publishing Group
DOI: 10.1038/s41587-020-0500-9

Heterogeneity of the GFP fitness landscape and data-driven protein design

Author(s): Louisa Gonzalez Somermeyer; Aubin Fleiss; Alexander S Mishin; Nina G Bozhanova; Anna A Igolkina; Jens Meiler; Maria-Elisenda Alaball Pujol; Ekaterina V Putintseva; Karen S Sarkisyan; Fyodor A Kondrashov
Published in: eLife, 11, 2022, Page(s) e75842, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.75842

Rates of SARS-CoV-2 transmission and vaccination impact the fate of vaccine-resistant strains

Author(s): Simon A. Rella, Yuliya A. Kulikova, Emmanouil T. Dermitzakis, Fyodor A. Kondrashov
Published in: Scientific Reports, 11/1, 2021, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-95025-3

The limits of normal approximation for adult height

Author(s): Sergei A. Slavskii, Ivan A. Kuznetsov, Tatiana I. Shashkova, Georgii A. Bazykin, Tatiana I. Axenovich, Fyodor A. Kondrashov, Yurii S. Aulchenko
Published in: European Journal of Human Genetics, 29/7, 2021, Page(s) 1082-1091, ISSN 1018-4813
Publisher: Natue Publishing Group
DOI: 10.1038/s41431-021-00836-7