Twinning for European excellence in Island Biodiversity Genomics

Deliverables

Documents, reports (1)

Events Year 1

Detailed information (title, date, location, content, participants) on the main events organised during year 1 will be submitted to the Commission Services and uploaded on the iBioGen website.

Websites, patent fillings, videos etc. (1)

D5.1 iBioGen website and social media page

Project website, which will be updated regularly and will include online resources for training and research in biodiversity genomics. iBioGen social media page, which will be updated regularly and will include detailed information about all dissemination events.

Publications

Peer reviewed articles (9)

Coming of age for COI metabarcoding of whole organism community DNA: towards bioinformatic harmonisation

Author(s): Creedy, Thomas; Andújar, Carmelo; Noguerales, Víctor; Overcast, Isaac; Papadopoulou, Anna; Morlon, Hélène; Vogler, Alfried; Emerson, Brent C.; Arribas, Paula
Published in: Molecular Ecology Resources, 22/3, 2022, Page(s) 847-861, ISSN 1755-098X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.13502

Revealing community assembly through barcoding: Mediterranean butterflies and dispersal variation.

Author(s): Brent C. Emerson; Eduardo Jiménez-García; Eduardo Jiménez-García; Daniel Suárez; Daniel Suárez
Published in: Journal of Animal Ecology, 89, 2020, Page(s) 1992-1996, ISSN 1365-2656
Publisher: British Ecological Society
DOI: 10.1111/1365-2656.13316

Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis

Author(s): Paula Arribas, Carmelo Andújar, Martin I. Bidartondo, Kristine Bohmann, Éric Coissac, Simon Creer, Jeremy R. deWaard, Vasco Elbrecht, Gentile F. Ficetola, Marta Goberna, Susan Kennedy, Henrik Krehenwinkel, Florian Leese, Vojtech Novotny, Fredrik Ronquist, Douglas W. Yu, Lucie Zinger, Thomas J. Creedy, Emmanouil Meramveliotakis, Víctor Noguerales, Isaac Overcast, Hélène Morlon, Alfried P. Vogl
Published in: Molecular Ecology, 30/5, 2021, Page(s) 1120-1135, ISSN 0962-1083
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mec.15797

Validated removal of nuclear pseudogenes and sequencing artefacts from mitochondrial metabarcode data.

Author(s): Carmelo Andújar; Thomas J. Creedy; Paula Arribas; Heriberto López; Antonia Salces-Castellano; Antonio J. Pérez-Delgado; Alfried P. Vogler; Alfried P. Vogler; Brent C. Emerson
Published in: Molecular Ecology Resources, 21, 2021, Page(s) 1772-1787, ISSN 1755-098X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.13337

DNA barcoding of bird species in Cyprus: a tool for conservation purposes

Author(s): ANDREAS C. DIMITRIOU, GIOVANNI FORCINA, CLAIRIE PAPAZOGLOU, PANICOS PANAYIDES, MONICA GUERRINI, ALAN CRABTREE, FILIPPO BARBANERA, SPYROS SFENTHOURAKIS
Published in: Bird Conservation International, 27/04, 2017, Page(s) 483-494, ISSN 0959-2709
Publisher: Cambridge University Press
DOI: 10.1017/S0959270916000472

H3ABioNet computational metagenomics workshop in Mauritius: training to analyse microbial diversity for Africa

Author(s): Shakuntala Baichoo, Gerrit Botha, Yasmina Jaufeerally-Fakim, Zahra Mungloo-Dilmohamud, Daniel Lundin, Nicola Mulder, Vasilis J. Promponas, Christos A. Ouzounis
Published in: Standards in Genomic Sciences, 10/1, 2015, ISSN 1944-3277
Publisher: Michigan State University
DOI: 10.1186/s40793-015-0111-0

Revisiting the saproxylic beetle ‘ Propomacrus cypriacus Alexis & Makris, 2002’ (Coleoptera: Euchiridae) using molecular, morphological and ecological data

Author(s): Spyros Sfenthourakis, Michael Hadjiconstantis, Christodoulos Makris, Andreas C. Dimitriou
Published in: Journal of Natural History, 51/17-18, 2017, Page(s) 1021-1034, ISSN 0022-2933
Publisher: Taylor & Francis
DOI: 10.1080/00222933.2017.1319521

Annotation inconsistencies beyond sequence similarity-based function prediction – phylogeny and genome structure

Author(s): Vasilis J. Promponas, Ioannis Iliopoulos, Christos A. Ouzounis
Published in: Standards in Genomic Sciences, 10/1, 2015, ISSN 1944-3277
Publisher: Michigan State University
DOI: 10.1186/s40793-015-0101-2

A validated workflow for rapid taxonomic assignment and monitoring of a national fauna of bees (Apiformes) using high throughput DNA barcoding

Author(s): Creedy, Thomas J.; Norman, Hannah; Tang, Cuong Q.; Qing Chin, Kai; Andujar, Carmelo; Arribas, Paula; O’Connor, Rory S.; Carvell, Claire; Notton, David G.; Vogler, Alfried P.
Published in: Molecular Ecology Resources, 20, 2019, Page(s) 40-53, ISSN 1755-098X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.13056