Deliverables
Introduction to Unix Command line tools for biologists working with largescale data isfinished The ESRs will obtain the knowledge on how to operate within the Unix environment All ESRs will participate in workshop and complete the practical assignments
Basics of statistical analysis for biologists’Basics of statistical analysis for biologists is completed for all ESRs The ESRs will know 1 How to analyse and visualise data in the statistical software package R 2 How to correctly interpret results and 3 How to create publicationquality tables and figures ESRs will participate in workshop and complete the practical assignments
Dissemination and Communication PlanCommunication and Dissemination Plan CCHT is responsible for compiling the plan to increase the visibility of MATER among key stakeholders and the society at large All partners will contribute in defining their respective actions resulting in a dedicated document which will be periodically reviewed
Female reproductive endocrinology and disordersBasics of female reproductive endocrinology and most common infertilityassociated gynaecological disorders is accomplished to all ESRs
ESR recruitmentESRs recruitment finished T63 M8
Report on training course: Complementary transferable skills trainingThe skills development programme will have three parts IIntellectual Property Rights IPR training II Research Ethics and Equality training III Communication training
GWA-studies for ovarian aging and related phenotypesGWAstudies for ovarian aging and related phenotypes The GWAstudies for ovarian agingrelated phenotypes are finished by using two extensive biobanks in Estonia EGCUT and Finland NFBC66 for Task 17 M24
GWAS crash courseGWAS crash course is provided to all ESRs The course requires that ESRs participate in workshop and complete the practical assignments
ESRs Kickoff meeting at KUL T63 M8
Project stationary and websiteDevelopment of project stationary logotemplates banners posters flyers brochures rollup and website
Publications
Author(s):
Margot van Riel, Yan Zhao, Tatjana Jatsenko, Lore Lannoo, Dirk Timmerman, Joris R Vermeesch
Published in:
Clinical Chemistry, 2023, ISSN 0009-9147
Publisher:
American Association for Clinical Chemistry, Inc.
DOI:
10.1093/clinchem/hvad107
Author(s):
Tiny Pagnaer, Maria Siermann, Pascal Borry, Olga Tšuiko
Published in:
BMC Medical Ethics, Issue 22/1, 2021, ISSN 1472-6939
Publisher:
BioMed Central
DOI:
10.1186/s12910-021-00694-4
Author(s):
Deligiannis, S. P., Kask, K., Modhukur, V., Boskovic, N., Ivask, M., Jaakma, Ü., Damdimopoulou, P., Tuuri, T., Velthut-Meikas, A., Salumets, A.
Published in:
Journal of Assisted Reproduction and Genetics, 2024, ISSN 1058-0468
Publisher:
Kluwer Academic/Plenum Publishers
DOI:
10.1007/s10815-024-03038-4
Author(s):
Eskici, N., Madhusudan, S., Vaaralahti, K., Yellapragada, V., Gómez-Sánchez, C. E., Kärkinen, J., Almusa, H., Brandstack, N., Miettinen, P. J., Wang, Y., Raivio, T.
Published in:
European Journal of Endocrinology, 2023, ISSN 0804-4643
Publisher:
BioScientifica Ltd.
DOI:
10.1093/ejendo/lvad111
Author(s):
Stanley, K. E., Jatsenko, T., Tuveri, S., Sudhakaran, D., Lannoo, L., Van Calsteren, K., De Borre, M., Parijs, I., Van Coillie, L., Van Den Bogaert, K., Toledo, R. A., Lenaerts, L., Tejpar, S., Punie, K., Rengifo, L. Y., Vandenberghe, P., Thienpont, B., Vermeesch, J. R.
Published in:
Nature Communications, 2024, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-024-46435-0
Author(s):
Lee, S., Arffman, R. K., Komsi, E. K., Lindgren, O., Kemppainen, J., Kask, K., Saare, M., Salumets, A., Piltonen, T.
Published in:
Journal of Pathology Informatics, 2024, ISSN 2153-3539
Publisher:
Elsevier Inc.
DOI:
10.1016/j.jpi.2024.100364
Author(s):
Jaakko S Tyrmi, Riikka K Arffman, Natàlia Pujol-Gualdo, Venla Kurra, Laure Morin-Papunen, Eeva Sliz, Terhi T Piltonen, Triin Laisk, Johannes Kettunen, Hannele Laivuori
Published in:
Human Reproduction, 2021, ISSN 0268-1161
Publisher:
Oxford University Press
DOI:
10.1093/humrep/deab250
Author(s):
Tang, Y., Frisendahl, C., Lalitkumar, P. G., Danielsson, K. G.
Published in:
Endocrines, 2023, ISSN 2673-396X
Publisher:
MDPI
DOI:
10.3390/endocrines4040048
Author(s):
Nina Boskovic, Gamze Yazgeldi, Sini Ezer, Mari H. Tervaniemi, Jose Inzunza, Spyridon Panagiotis Deligiannis, Barış Yaşar, Tiina Skoog, Kaarel Krjutškov, Shintaro Katayama, Juha Kere
Published in:
STAR Protocols, 2023, ISSN 2666-1667
Publisher:
Elsevier Inc.
DOI:
10.1016/j.xpro.2023.102357
Author(s):
Yiqun Tang; Sakthivignesh Ponandai-srinivasan; Caroline Frisendahl; Johanna K. Andersson; Dora Pavone; Elizabeth A. Stewart; Parameswaran Grace Luther Lalitkumar; Eberhard Korsching; Nageswara Rao Bogavarappu; Kristina Gemzell-Danielsson
Published in:
Frontiers in Endocrinology, 2023, ISSN 1664-2392
Publisher:
Frontiers Media SA
DOI:
10.3389/fendo.2023.1026168
Author(s):
Estonian Biobank Research Team; FinnGen; Koel, Mariann; Vosa, Urmo; Joeloo, Maarja; Läll, Kristi; Gualdo, Natalia P.; Laivuori, Hannele; Lemmelä, Susanna; Daly, Mark; Palta, Priit; Mägi, Reedik; Laisk, Triin
Published in:
Human Molecular Genetics, 2023, ISSN 0964-6906
Publisher:
Oxford University Press
DOI:
10.1093/hmg/ddad043
Author(s):
Danti, L., Lundin, K., Sepponen, K., Yohannes, D. A., Kere, J., Tuuri, T., Tapanainen, J. S.
Published in:
Journal of Ovarian Research, 2023, ISSN 1757-2215
Publisher:
BioMed Central
DOI:
10.1186/s13048-023-01264-5
Author(s):
Pujol-Gualdo, N., Läll, K., Lepamets, M. et al.
Published in:
Nature Communication, Issue 13, article no 3584, 2022, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-022-31188-5
Author(s):
Pujol-Gualdo, N., Mägi, R., Laisk, T.
Published in:
Human Reproduction, 2023, ISSN 0268-1161
Publisher:
Oxford University Press
DOI:
10.1093/humrep/dead217
Author(s):
Venkatram Yellapragada, Nazli Eskici, Yafei Wang, Shrinidhi Madhusudan, Kirsi Vaaralahti, Timo Tuuri, Taneli Raivio
Published in:
Disease Models & Mechanisms, 2022, ISSN 1754-8411
Publisher:
The Company of Biologists
DOI:
10.1242/dmm.049436
Author(s):
Jia Zhu, Natàlia Pujol-Gualdo, Laura B L Wittemans, Cecilia M Lindgren, Triin Laisk, Joel N Hirschhorn, Yee-Ming Chan
Published in:
The Journal of Clinical Endocrinology & Metabolism, 2021, ISSN 0021-972X
Publisher:
The Endocrine Society
DOI:
10.1210/clinem/dgab838
Author(s):
Maria Siermann; Zoë Claesen; Laurent Pasquier; Taneli Raivio; Olga Tšuiko; Joris Robert Vermeesch; Pascal Borry
Published in:
J Community Genet, 2022, ISSN 1868-310X
Publisher:
Springer Verlag
DOI:
10.1007/s12687-021-00573-w
Author(s):
Maria Siermann; Ophelia Valcke; Joris Robert Vermeesch; Taneli Raivio; Olga Tšuiko; Pascal Borry
Published in:
European Journal of Human Genetics, 2023, ISSN 1476-5438
Publisher:
Springer Nature
DOI:
10.1038/s41431-023-01333-9
Author(s):
Maria Siermann, Olga Tšuiko, Joris Robert Vermeesch, Taneli Raivio, Pascal Borry
Published in:
Genetics in Medicine, 2022, ISSN 1098-3600
Publisher:
Lippincott Williams & Wilkins Ltd.
DOI:
10.1016/j.gim.2022.03.001
Author(s):
Yafei Wang, Shrinidhi Madhusudan, Ludovica Cotellessa, Jouni Kvist, Nazli Eskici, Venkatram Yellapragada, Kristiina Pulli, Carina Lund, Kirsi Vaaralahti, Timo Tuuri, Paolo Giacobini, Taneli Raivio
Published in:
Stem Cells, 2022, ISSN 1549-4918
Publisher:
Oxford University Press
DOI:
10.1093/stmcls/sxac069
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