Livrables
Report summarizing the results of the mapping survey including an overview of collected data
Roadmap for the use of existing data from microbiome related projectsA document defining needs eg bioinformatic pipelines and proposing a strategy incl required resources to address these in order to enable use of existing data
Report on dissemination materials and distribution indicatorsReport assessing the impact of different dissemination channelsmaterials applied throughout the project will be composed and made available via project website Deliverable will be updated regularly up to a final version in M48 M24 M36 M48
Summary report of the IBF Meeting 2019Summary report of the IBF Meeting in Vancouver Canada
Reports on educational and industry needsReports describing i elucidated educational needs and ii other needs defined by the industry that hamper the transition of microbiomebased solutions into commercialised products andor applications and providing recommendations on how to meet these the best in the future
Summary report of the IBF Meeting 2021Summary report of the IBF Meeting in 2021 date and venue to be defined by IBF
Report on the R&I strategic agendas for future microbiome activities and applications, and showing the connexions with the regulationsA comprehensive report outlying information collected and providing recommendations on RI strategic agendas for future microbiome activities and applications and showing the connexions with the regulations will be assembled and made available via projects website
General recommendations on how to analyse metagenomic datasetsGeneral recommendations on how to analyse metagenomic datasets will be implemented in a joint white paper and made available as a publication in the peerreviewed journal
Opinion paper on minimum requirements for meta dataPaper defining sampling and storage procedures as well as minimum requirements for meta data to be applied in the future studies (Analogous to MIQE publication (https://www.ncbi.nlm.nih.gov/pubmed/19246619) that standardized qPCR-based studies)
Report on targeted dissemination to regulatory, industry and society and impact indicatorsReport assessing the impact of dissemination activities executed throughout the project and providing recommendations for postproject impact insurance will be composed and made available via project website
Report on Common Ground WorkshopReport describing outcome of the Common Group Workshop with an overview of collected data and a strategy for the mapping survey (Task 1.2.)
Minutes of the work meeting with the European regulation agency/experts organized in task 3.3Workshop with the European regulation agencyexperts as well as scientific experts industrials and policymakers will be organized in order to facilitate the dialog and to build a clear path to new applications Report on the workshop conclusions will be made available via projects website
Summary report of the IBF Meeting 2020Summary report of the IBF Meeting related to the WG Food Systems Microbiomes in2020 Berlin Germany
Presentation of the analysis of the Knowledge platform and hub to MicrobiomeSupport meeting and to the IBF ‘Food Systems Microbiome’ working groupPresentation summarizing results of the analysis of the Knowledge platform and hub will be given in course of MicrobiomeSupport meeting to consortium and to the IBF ‘Food Systems Microbiome’ working group. The presentation will also be made available to all stakeholders via project’s website.
Review paper on the integrative use of different –omics technologies in microbiome researchA document defining stateoftheart and future needs in the area of omics technologies This document will also propose a strategy of how these needs should be addressed and what advantages would ensue
Plan for the sustainable engagement with stakeholdersWorking document proposing strategies for sustainable engagement of all relevant stakeholders will be provided to all project partners
Position paper on microbiome definitionDocument providing an overview on currently used microbiome definitions and the recommendation for more standardized microbiome definition to be used in the future
Communication and dissemination planCommunication and dissemination plan containing information on key messages, targeted audiences and recommended communication channels (within the consortium but also towards external stakeholders) will be provided to all project partners
Synthesis paper on microbiome research globallySynthesis paper providing an overview of all data collected in Tasks 1.1, 1.2 and 1.3. with an emphasis of highlighting the existing links and identified needs
Final conference will be held and report made available via project website
Standards available via national culture collectionsBacterial and fungal strains that are constituent of standards for microbiome research defined in Task 23 will be deposited in selected national culture collections and thus made available to research community
Concept of an IBF WebsiteThe IBF website will be established at the domain wwwbioeconomyforumorg andregularly updated with the content provided by IBF members until the end of theMicrobiomeSupport project In M18 the main concept for this IBF website has beensubmitted to the IBF for review Lead FZJ Support VLO AIT
Trans-sectorial workshop organized in Task 3.2.Workshop with the members of the three MicrobiomeSupport Advisory Groups will be organised in order to elaborate microbiomerelated strategic agendas Report on the workshop conclusions will be made available via projects website
Project website will be made available on www.microbiomsupport.eu. The website will also host the Database established in WP1
Database (accessible via MicrobiomeSupport webpage) containing information on microbiome-related research, throughout the food systems and beyondDatabase containing data collected in Tasks 11 12 and 13 will be made available as an open access resource to all stakeholders through the projects website established in WP5
Data management plan will be established and regularly updated. These documents will be made available to all project partners via project’s website
Publications
Auteurs:
Rocío Olmo 1,2*, Stefanie Urimare Wetzels 1,2, Jaderson Silveira Leite Armanhi 3,4, Paulo Arruda 4,5,6, Gabriele Berg 7,8,9, Tomislav Cernava 7, Paul D. Cotter 10,11, Solon Cordeiro Araujo 12,13, Rafael Soares Correa de Souza 3,5, Ilario Ferrocino 14, Jens C. Frisvad 15, Marina Georgalaki 16, Hanne Helene Hansen 17, Maria Kazou 16, George Seghal Kiran 18, Tanja Kostic 19, Susanne Krauss-Etschmann
Publié dans:
Frontiers in Microbiology July 2022, Numéro 1664302X, 2022, ISSN 1664-302X
Éditeur:
Frontiers Media
DOI:
10.3389/fmicb.2022.834622
Auteurs:
Lene Lange1*, Gabriele Berg2, Tomislav Cernava2, Marie‑Christine Champomier‑Vergès3, Trevor Charles4,
Luca Cocolin5, Paul Cotter6, Kathleen D’Hondt7, Tanja Kostic8, Emmanuelle Maguin3, Thulani Makhalanyane9,
Annelein Meisner10, Matthew Ryan11, George Seghal Kiran12, Rafael Soares de Souza13, Yolanda Sanz14,
Michael Schloter15, Hauke Smidt16, Steve Wakelin17 and Angela Sessitsch8*
Publié dans:
Environmental Microbiome, Numéro 25246372, 2022, ISSN 2524-6372
Éditeur:
BMC Journals
DOI:
10.1186/s40793-022-00444-y
Auteurs:
Matthew J. Ryan, Michael Schloter, Gabriele Berg, Linda L. Kinkel, Kellye Eversole, James A. Macklin, Daria Rybakova, Angela Sessitsch
Publié dans:
Environmental Microbiology, Numéro Volume 23, Numéro 1, January 2021, 2021, Page(s) 372-375, ISSN 1462-2920
Éditeur:
Society for Applied Microbiology and John Wiley & Sons Ltd
DOI:
10.1111/1462-2920.15323
Auteurs:
Ilario Ferrocino, Kalliopi Rantsiou, Ryan McClure, Tanja Kostic, Rafael Soares Correa de Souza, Lene Lange, Jamie FitzGerald, Aicha Kriaa, Paul Cotter, Emmanuelle Maguin, Bettina Schelkle, Michael Schloter, Gabriele Berg, Angela Sessitsch, Luca Cocolin, The MicrobiomeSupport Consortium
Publié dans:
Comprehensive Review Food Science, Food Safety, Wiley, 2022, ISSN 1541-4337
Éditeur:
International Life Sciences Institute
DOI:
10.1111/1541-4337.13103
Auteurs:
Annelein Meisner, Beatrix Wepner, Tanja Kostic, Leo S van Overbeek, Christine J Bunthof,
Rafael Soares Correa de Souza, Marta Olivares, Yolanda Sanz, Lene Lange, Doreen Fischer,
Angela Sessitsch and Hauke Smidt, MicrobiomeSupport Consortium
Publié dans:
Current Opinion in Biotechnology, Numéro 73, 2022, 2022, Page(s) 171-178, ISSN 0958-1669
Éditeur:
Elsevier BV
DOI:
10.1016/j.copbio.2021.08.003
Auteurs:
Karel Callens1*, Fanette Fontaine1, Yolanda Sanz2, Anne Bogdanski1, Kathleen D'Hondt3, Lene Lange4, Hauke Smidt5, Leo Van Overbeek5, Tanja Kostic6, Emmanuelle Maguin7, Annelein Meisner5, Inga Sarand8 and Angela Sessitsch6*
Publié dans:
Frontiers in Sustainable Food Systems, Numéro 2571581X, 2022, ISSN 2571-581X
Éditeur:
Frontiers
DOI:
10.3389/fsufs.2022.1047765
Auteurs:
Tomislav Cernava, Daria Rybakova, François Buscot, Thomas Clavel, Alice Carolyn McHardy, Fernando Meyer, Folker Meyer, Jörg Overmann, Bärbel Stecher, Angela Sessitsch, Michael Schloter, Gabriele Berg & The MicrobiomeSupport Team
Publié dans:
Environmental Microbiome volume (2022), Numéro 17, Article number: 33, 2022, ISSN 2524-6372
Éditeur:
Springer Nature
DOI:
10.1186/s40793-022-00425-1
Auteurs:
Kathleen D’Hondt, Tanja Kostic, Richard McDowell, Francois Eudes, Brajesh K. Singh, Sara Sarkar, Marios Markakis, Bettina Schelkle, Emmanuelle Maguin & Angela Sessitsch
Publié dans:
Nature Microbiology, Numéro 6, 2021, 2021, Page(s) 138-142, ISSN 2058-5276
Éditeur:
springer natura ltd.
DOI:
10.1038/s41564-020-00857-w
Auteurs:
Gabriele Berg, Daria Rybakova, Doreen Fischer, Tomislav Cernava, Marie-Christine Champomier Vergès, Trevor Charles, Xiaoyulong Chen, Luca Cocolin, Kellye Eversole, Gema Herrero Corral, Maria Kazou, Linda Kinkel, Lene Lange, Nelson Lima, Alexander Loy, James A. Macklin, Emmanuelle Maguin, Tim Mauchline, Ryan McClure, Birgit Mitter, Matthew Ryan, Inga Sarand, Hauke Smidt, Bettina Schelkle, Hugo Rou
Publié dans:
Microbiome, Numéro 8/1, 2020, ISSN 2049-2618
Éditeur:
BMC
DOI:
10.1186/s40168-020-00875-0
Auteurs:
Bruna D. Batista, Brajesh K. Singh
Publié dans:
Next generation tools for crop-microbiome manipulation to mitigate the impact of climate change, 2022, ISSN 1462-2920
Éditeur:
Applied Microbiology International and John Wiley & Sons Ltd
DOI:
10.1111/1462-2920.16231
Auteurs:
M.J. Ryan, M. Schloter, G. Berg, T. Kostic, L.L. Kinkel, K. Eversole, J.A. Macklin, B. Schelkle, M. Kazou, I. Sarand, B.K. Singh, D. Fischer, E. Maguin, I. Ferrocino, N. Lima, R.S. McClure, T.C. Charles, R.S.C. de Souza, G.S. Kiran, H.L. Krug, J. Taffner, H. Roume, J. Selvin, D. Smith, D. Rybakova, A. Sessitsch
Publié dans:
Trends in Microbiology, 2020, ISSN 0966-842X
Éditeur:
Elsevier BV
DOI:
10.1016/j.tim.2020.06.009
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