Next generation variety testing for improved cropping on European farmland

Deliverables

Researcher focussed website established - M30

LESP will develop a researcherfocused website that will allow researchers to query modify and update variety data and information Month 30

Road map reports detailing how new methods could be applied to each selected crop type

This report will provide a road map on how new methods could be applied to the crop subset Collaboration with INVITE is anticipated in the task relating to this report

Publications

Analysis of the chromosomal clustering of Fusarium-responsive wheat genes uncovers new players in the defence against head blight disease

Author(s): Alexandre Perochon, Harriet R. Benbow, Katarzyna Ślęczka-Brady, Keshav B. Malla, Fiona M. Doohan
Published in: Scientific Reports, Issue 11/1, 2021, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-86362-4

TrainSel: An R Package for Selection of Training Populations

Author(s): Deniz Akdemir, Simon Rio, Julio Isidro y Sánchez
Published in: Frontiers in Genetics, Issue 12, 2021, ISSN 1664-8021
Publisher: Frontiers Media
DOI: 10.3389/fgene.2021.655287

Genotype by Environment Interaction Analysis of Agronomic Spring Barley Traits in Iceland Using AMMI, Factorial Regression Model and Linear Mixed Model

Author(s): Hrannar Smári Hilmarsson, Simon Rio, Julio Isidro y Sánchez
Published in: Agronomy, Issue 11/3, 2021, Page(s) 499, ISSN 2073-4395
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/agronomy11030499

Modelling Excess Zeros in Count Data: A New Perspective on Modelling Approaches

Author(s): John Haslett; Andrew C. Parnell; John Hinde; Rafael de Andrade Moral
Published in: International Statistical Review, Issue 2, 2021, ISSN 0306-7734
Publisher: International Statistical Institute
DOI: 10.1111/insr.12479

Evaluation of the susceptibility of modern, wild, ancestral, and mutational wheat lines to Septoria tritici blotch disease

Author(s): Sobia Ajaz, Harriet R. Benbow, Thalia Christodoulou, Cristobal Uauy, Fiona M. Doohan
Published in: Plant Pathology, Issue 70/5, 2021, Page(s) 1123-1137, ISSN 0032-0862
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/ppa.13369

Comprehensive analysis of pathogen-responsive wheat NAC transcription factors: new candidates for crop improvement

Author(s): Monika Vranic, Alexandre Perochon, Harriet Benbow, Fiona M Doohan
Published in: G3 Genes|Genomes|Genetics, 2022, ISSN 2160-1836
Publisher: Genetics Society of America
DOI: 10.1093/g3journal/jkac247

Genomic prediction and training set optimization in a structured Mediterranean oat population.

Author(s): Simon Rio; Luis M. Gallego-Sánchez; Gracia Montilla-Bascón; Francisco José Canales; Julio Isidro y Sánchez; Elena Prats
Published in: Theoretical and Applied Genetics volume, Issue 134, 2021, ISSN 0040-5752
Publisher: Springer Verlag
DOI: 10.1007/s00122-021-03916-w

Transcriptional Profiling Reveals the Wheat Defences against Fusarium Head Blight Disease Regulated by a NAC Transcription Factor

Author(s): Monika Vranić; Alexandre Perochon; Fiona M. Doohan
Published in: Plants, Issue 12, 2023, ISSN 2223-7747
Publisher: MDPI
DOI: 10.3390/plants12142708

Training Set Optimization for Sparse Phenotyping in Genomic Selection: A Conceptual Overview

Author(s): Julio Isidro y Sánchez, Deniz Akdemir
Published in: Frontiers in Plant Science, Issue 12, 2021, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.715910

Assessment of genomic prediction reliability and optimization of experimental designs in multi-environment trials

Author(s): Simon Rio; Deniz Akdemir; Tiago Carvalho; Julio Isidro y Sánchez
Published in: Theoretical and Applied Genetics, Issue 2, 2022, ISSN 0040-5752
Publisher: Springer Verlag
DOI: 10.1007/s00122-021-03972-2

Visualizing Variable Importance and Variable Interaction Effects in Machine Learning Models

Author(s): Alan Inglis; Andrew C. Parnell; Catherine B. Hurley
Published in: Journal of Computational and Graphical Statistics, Issue 2, 2021, ISSN 1061-8600
Publisher: American Statistical Association
DOI: 10.48550/arxiv.2108.04310

Pollen Geochronology from the Atlantic Coast of the United States during the Last 500 Years

Author(s): Margaret Christie, Christopher Bernhardt, Andrew Parnell, Timothy Shaw, Nicole Khan, D. Corbett, Ane García-Artola, Jennifer Clear, Jennifer Walker, Jeffrey Donnelly, Tobias Hasse, Benjamin Horton
Published in: Water, Issue 13/3, 2021, Page(s) 362, ISSN 2073-4441
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/w13030362

Towards a Digital Twin of the Earth System: Geo-Soft-CoRe, a Geoscientific Software & Code Repository

Author(s): Irene DeFelipe; Juan Alcalde; Eldar Baykiev; Isabel Bernal; Kittiphon Boonma; Ramon Carbonell; Stephanie Flude; Arnau Folch; Javier Fullea; Daniel García-Castellanos; Adelina Geyer; Santiago Giralt; Armand Hernández; Ivone Jiménez-Munt; Ajay Kumar; Maria-Gema Llorens; Joan Martí; Cecilia Molina; Andrés Olivar-Castaño; Andrew Parnell; Martin Schimmel; Montserrat Torné; Sergi Ventosa
Published in: Frontiers in Earth Science, Issue 10, 2022, ISSN 2296-6463
Publisher: Frontiers Media S.A.
DOI: 10.3389/feart.2022.828005

AFBI Science Impacts 2021: InnoVar: Next generation variety testing for improved cropping on European farmland

Author(s): Gareth Burns, Lisa Black
Published in: AFBI Science Impacts, 2021
Publisher: AFBI

How InterTradeIreland helped InnoVar secure H2020 funding

Author(s): Lisa Black, Fiona Doohan, Elaine Groom, IntertradeIreland
Published in: 2020
Publisher: Intertrade Ireland

InnoVar Kicks Off!

Author(s): Lisa Black, Hazel Brown, Gerry Hoppe
Published in: 2019
Publisher: AFBI

Tystoftes deltagelse i EU projektet InnoVar

Author(s): Preben Klarskov Hansen
Published in: 2020
Publisher: Tystoftefonden

Fænotypiske forskelle mellem sorter EU projektet InnoVar

Author(s): Preben Klarskov Hansen
Published in: 2020
Publisher: Tystofte

Deliverables

Publications

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