Genomic and nutritional innovations for genetically superior farmed fish to improve efficiency in European aquaculture

Deliverables

Novel feed formulations targeting farm competitiveness

Report on tailored feed formulae for genetically superior fish reared under different production systems to maximise growth and feed efficiency at farm level and to increase European farm competitiveness Month 40

Impact on industry and society, environment

Report on the progress realised in breeding and its impact on industry and society, environment [Month 6, 12].

Public and internal webpages

Public and internal webpages for communication and dissemination [Month 2-3].

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Publications

Highlights from gut microbiota survey in farmed fish - European sea bass and gilthead sea bream case studies

Author(s): Terova G, Naya-Català F, Rimoldi S, Piazzon MC, Torrecillas S, Toxqui MS, Fontanillas R, Calduch-Giner J, Hostins B, Sitjà-Bobadilla A, Montero D, Pérez-Sánchez J.
Published in: Aquaculture Europe, 47, 2022, Page(s) 1, ISSN 0773-6940
Publisher: European Aquaculture Society

Additional file 4 of Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream

Author(s): M. Carla Piazzon; Naya-Catal��, Fernando; Perera, Erick; Palenzuela, Oswaldo; Sitj��-Bobadilla, Ariadna; P��rez-S��nchez, Jaume
Published in: 3, 2020
Publisher: BMC Springer Nature
DOI: 10.6084/m9.figshare.13278407.v1

Additional file 3 of Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream

Author(s): M. Carla Piazzon; Naya-Catal��, Fernando; Perera, Erick; Palenzuela, Oswaldo; Sitj��-Bobadilla, Ariadna; P��rez-S��nchez, Jaume
Published in: 4, 2020
Publisher: BMC Springer Nature
DOI: 10.6084/m9.figshare.13278404.v1

Additional file 2 of Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream

Author(s): M. Carla Piazzon; Naya-Catal��, Fernando; Perera, Erick; Palenzuela, Oswaldo; Sitj��-Bobadilla, Ariadna; P��rez-S��nchez, Jaume
Published in: 2, 2020
Publisher: BMC Springer Nature
DOI: 10.6084/m9.figshare.13278401.v1

Additional file 1 of Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream

Additional file 7 of Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream

Author(s): M. Carla Piazzon; Naya-Catal��, Fernando; Perera, Erick; Palenzuela, Oswaldo; Sitj��-Bobadilla, Ariadna; P��rez-S��nchez, Jaume
Published in: 1, 2020
Publisher: BMC Springer Nature
DOI: 10.6084/m9.figshare.13278416

Genetic validation of the Xray method for phenotyping feed intake in Atlantic salmon

Author(s): Difford GF, Hatlen B, Gjerde B, Romarheim OH, Baeverfjord G, Heia K, Norris A, Sonesson AK
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 322-323
Publisher: European Aquaculture Society

Diet and host genetic background drive differences in the transcriptomic profile of intestinal microbiota in gilthead sea bream

Author(s): Piazzon MC, Naya-Català F, Sitjà-Bobadilla A, Pérez-Sánchez J
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 995-996
Publisher: European Aquaculture Society

Genomic selection of resistance to Flavobacterium columnare in rainbow trout using low density SNP panels

Author(s): Fraslin C, Kause A, Nousiainen A, Koskinen H, Houston RD
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 445-446
Publisher: European Aquaculture Society

"Evaluation of genetic gain in rainbow trout fed standard or ""future"" diet after 10 generations of multi-trait selection in the Aqualande selective breeding program"

Author(s): Vandeputte M, Corraze G,Doerflinger J, Enez F, Clota F, Terrier F, Horat M, Larroquet L, Dechamp N, Petit V, Haffray P, Skiba-Cassy S and Dupont-Nivet M
Published in: Aquaculture Europe 2020, online, April 12-15 2021. Conference, Eposters & e-Market, 2021, Page(s) 615-616
Publisher: European Aquaculture Society

Pigment QTL genotype by diet interaction on growth in Atlantic salmon (Salmo salar)

Author(s): Sae-Lim P, Boison S, Gonen S, Baranski M, Stene JÅ, Rosenlund G, Hatlen B, Ruyter B, Fontanillas R, Martinez Rubio L, Norris A
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 886-887
Publisher: European Aquaculture Society

Functional additives in selected European sea bass Dicentrarchus labrax genotype: effects on stress response and Gill antioxidant response

Author(s): Serradell A, Torrecillas S, Makol A, Acosta F, Izquierdoa MS, Allal F, Haffray P, Bajek A, Montero D
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 1190-1191
Publisher: European Aquaculture Society

The use of a nutrient-based model as a decision tool to support the design of nutritional experiments

Author(s): Mendes R, Soares F, Silva T, Nobre A, Conceição L
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 815-816
Publisher: European Aquaculture Society

Role of selective breeding in the improvement of feed efficiency at rainbow trout farms

Author(s): Kause A, Nousiainen A and Koskinen H
Published in: Aquaculture Europe 2020, online, April 12-15 2021. Conference, Eposters & e-Market, 2021, Page(s) 298-299
Publisher: European Aquaculture Society

Selective genotyping strategies for genomic selection for a disease resistance traits

Author(s): Dagnachew BS, Norris A, Sonesson A
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 295-296
Publisher: European Aquaculture Society

Integrating selective breeding into commercial production of aquaculture species

Author(s): Benan Gulzari, John WM Bastiaansen, Hans Komen
Published in: WIAS annual conference proceedings 2020, 2021, Page(s) 58
Publisher: Wageningen Institute of Animal Sciences

Defining trout nutritional requirements for the future by revisiting the past

Author(s): Silva TS, Kause A, Soares F, Nobre A, Dias J, Conceição LEC
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 1200-1201
Publisher: European Aquaculture Society

Genomic basis of resistance to Flavobacterium columnare in rainbow trout

Author(s): Fraslin C, Nousiainen A, Koskinen H, Houston RD and Kause A
Published in: Aquaculture Europe 2020, online, April 12-15 2021. Conference, Eposters & e-Market, 2021, Page(s) 223-224
Publisher: European Aquaculture Society

Nutritional innovations in superior European sea bass Dicentrarchus labrax genotypes: implications in fish performance and gut health

Author(s): Montero D, Torrecillas S, Rimoldi S, Serradell A, Fontanillas R, Acosta F, Allal F, Haffray P, Bajek A, Terova G
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 830-831
Publisher: European Aquaculture Society

Phenotypic and genomic correlations between feed efficiency and metabolic traits in European sea bass

Author(s): Besson M, McKenzie DJ, Nati J, Salou G, Vergnet A, Brunier J, Bajek A, Haffray P, Vandeputte M, Allal F
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 146-147
Publisher: European Aquaculture Society

European consumers’ awareness and informational needs for fish farming practices

Author(s): Latvala T, Mariojouls C, Ginés R, Muller L, Kause A
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 770-771
Publisher: European Aquaculture Society

Comparing selection response and inbreeding level in family and group mating designs of sea bream and sea bass

Author(s): Roozeboom C, Komen H and Bastiaansen JWM
Published in: Aquaculture Europe 2020, online, April 12-15 2021. Conference, Eposters & e-Market, 2021, Page(s) 510-511
Publisher: European Aquaculture Society

Do consumers want information about aquaculture?

Author(s): Mariojouls C, Latvala T, Gines R and Muller L
Published in: Aquaculture Europe 2020, online, April 12-15 2021. Conference, Eposters & e-Market, 2021, Page(s) 355-356
Publisher: European Aquaculture Society

Optimizing a rainbow trout breeding program with genomic selection

Author(s): Roozeboom C, Kause A, Camara M, Komen H, Bastiaansen JWM
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 1112-1113
Publisher: European Aquaculture Society

Genomic and nutritional innovations for genetically superior farmed fish

Author(s): Kause, A.
Published in: Aquaculture Europe 19 congress, Berlin, Germany, October 7-10 2019. Our future growing from water. Book of Abstracts, 2019, Page(s) p. 668
Publisher: European Aquaculture Society

Development of feeds and feeding strategies for genetically superior fish from breeding programmes

Author(s): Montero D, Torrecillas S, Tocher DR, Vandeputte M, Fontanillas R, Rosenlund G, Haffray P, Ruyter B, Sonesson A, Bastiaansen J & Kause A
Published in: Aquaculture Europe 19 congress, Berlin, Germany, October 7-10 2019. Our future growing from water. Book of Abstracts, 2019, Page(s) p. 954-955
Publisher: European Aquaculture Society

The impact of genomic selection in commercial breeding programmes for four important species in European aquaculture

Author(s): Bastiaansen, J.W.M
Published in: Aquaculture Europe 19 congress, Berlin, Germany, October 7-10 2019. Our future growing from water. Book of Abstracts, 2019, Page(s) p.137
Publisher: European Aquaculture Society

Improvement in resource efficiency and reduction in nutrient loading from rainbow trout farms: The role of selective breeding

Author(s): Kause A, Koskinen H & Nousiainen A
Published in: AquaFarm2020 congress, Session: EuroAquaculture - Research projects for a unified development., 2020
Publisher: AquaFarm

Assessment of a “Future practical” diet on gut microbiota of genetically selected or not selected strain of European sea bass (Dicentrarchus labrax)

Author(s): Rimoldi S, Torrecillas S, Montero D, Serradell A, Fontanillas R & Terova G
Published in: Aquaculture Europe 2020, online, April 12-15 2021. Conference, Eposters & e-Market, 2021, Page(s) 496-497
Publisher: European Aquaculture Society

Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream

Author(s): Piazzon MC, Naya-Català F, Perera E, Palenzuela O, Sitjà-Bobadilla A and Pérez-Sánchez J
Published in: Aquaculture Europe 2020, online, April 12-15 2021. Conference, Eposters & e-Market, 2021, Page(s) 446-447
Publisher: European Aquaculture Society

Effects of full replacement of dietary fishmeal with insect meal from Tenebrio molitor on rainbow trout gut and skin microbiota

Author(s): Terova G, Gasco L, Moroni F, Antonini M, Saroglia M and Rimoldi S
Published in: Aquaculture Europe 2020, online, April 12-15 2021. Conference, Eposters & e-Market, 2021, Page(s) 576-577
Publisher: European Aquaculture Society

Genetic correlations between processing traits and individual feed efficiency in a gilthead sea bream (Sparus aurata) commercial line

Author(s): Bestin A, Besson M, Vergnet A, Allal F, Clota F, Cariou S, Bruant J-S, Haffray P, Vandeputte M
Published in: Aquaculture Europe 2021, Oceans of opportunity, Madeira, Portugal, October 4-7, 2021, Abstracts, 2021, Page(s) 148-149
Publisher: European Aquaculture Society

Effect of dietary oil from Camelina sativa on the growth performance, fillet fatty acid profile and gut microbiome of gilthead Sea bream ( Sparus aurata )

Author(s): David Huyben, Simona Rimoldi, Chiara Ceccotti, Daniel Montero, Monica Betancor, Federica Iannini, Genciana Terova
Published in: PeerJ, 8, 2020, Page(s) e10430, ISSN 2167-8359
Publisher: PeerJ
DOI: 10.7717/peerj.10430

New value from food and industrial wastes - bioaccumulation of omega-3 fatty acids from an oleaginous microbial biomass paired with a brewery by-product using black soldier fly (Hermetia illucens) larvae.

Author(s): Ceccotti C, Bruno D, Tettamanti G, Branduardi P, Bertacchi S, Labra M, Rimoldi S, Terova G.
Published in: Waste Management, 143, 2022, Page(s) 95-104, ISSN 0956-053X
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.wasman.2022.02.029

The effects of nisin-producing Lactococcus lactis strain used as probiotic on gilthead sea bream (Sparus aurata) growth, gut microbiota, and transcriptional response

Author(s): Moroni Federico, Naya-Català Fernando, Piazzon M. Carla, Rimoldi Simona, Calduch-Giner Josep, Giardini Alberto, Martínez Inés, Brambilla Fabio, Pérez-Sánchez Jaume, Terova Genciana
Published in: Frontiers in Marine Science, Vol. 8, Article 659519, 2021, Page(s) p.364, ISSN 2296-7745
Publisher: Frontiers Media SA
DOI: 10.3389/fmars.2021.659519

Effects of full replacement of dietary fishmeal with insect meal from Tenebrio molitor on rainbow trout gut and skin microbiota

Author(s): Genciana Terova, Elisabetta Gini, Laura Gasco, Federico Moroni, Micaela Antonini, Simona Rimoldi
Published in: Journal of Animal Science and Biotechnology, 12/1, 2021, Page(s) 14, ISSN 2049-1891
Publisher: Biomed Central Limited
DOI: 10.1186/s40104-021-00551-9

Realised genetic gains on growth, survival, feed conversion ratio and quality traits after ten generations of multi-trait selection in rainbow trout Oncorhynchus mykiss, fed a standard diet or a “future” fish-free and soy-free diet

Author(s): Marc Vandeputte; Geneviève Corraze; Jérôme Doerflinger; Florian Enez; Frédéric Clota; Frédéric Terrier; Mathilde Horat; Laurence Larroquet; Vincent Petit; Pierrick Haffray; Sandrine Skiba-Cassy; Mathilde Dupont-Nivet
Published in: Aquaculture Reports, 27, 2022, Page(s) 101363 (13 p.), ISSN 2352-5134
Publisher: Elsevier BV
DOI: 10.1016/j.aqrep.2022.101363

The European sea bass: a key marine fish model in the wild and in aquaculture

Author(s): M. Vandeputte, P.‐A. Gagnaire, F. Allal
Published in: Animal Genetics, 50/3, 2019, Page(s) 195-206, ISSN 0268-9146
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/age.12779

Sex, Age, and Bacteria: How the Intestinal Microbiota Is Modulated in a Protandrous Hermaphrodite Fish

Author(s): M. Carla Piazzon, Fernando Naya-Català, Paula Simó-Mirabet, Amparo Picard-Sánchez, Francisco J. Roig, Josep A. Calduch-Giner, Ariadna Sitjà-Bobadilla, Jaume Pérez-Sánchez
Published in: Frontiers in Microbiology, 10, 2019, Page(s) Article 2512, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2019.02512

Effects of hydrolyzed fish protein and autolyzed yeast as substitutes of fishmeal in the gilthead sea bream (Sparus aurata) diet, on fish intestinal microbiome

Author(s): S. Rimoldi, E. Gini, J. F. A. Koch, F. Iannini, F. Brambilla, G. Terova
Published in: BMC Veterinary Research, 16/1, 2020, Page(s) 1-13, ISSN 1746-6148
Publisher: BioMed Central
DOI: 10.1186/s12917-020-02335-1

Effects of Partially Defatted Hermetia illucens Meal in Rainbow Trout Diet on Hepatic Methionine Metabolism

Author(s): Genciana Terova, Chiara Ceccotti, Chiara Ascione, Laura Gasco, Simona Rimoldi
Published in: Animals, 10/6, 2020, Page(s) 1059, ISSN 2076-2615
Publisher: MDPI
DOI: 10.3390/ani10061059

Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream

Author(s): M. Carla Piazzon, Fernando Naya-Català, Erick Perera, Oswaldo Palenzuela, Ariadna Sitjà-Bobadilla, Jaume Pérez-Sánchez
Published in: Microbiome, 8/1, 2020, Page(s) 1-17, ISSN 2049-2618
Publisher: BMC Springer Nature
DOI: 10.1186/s40168-020-00922-w

Influence of Genetic Selection for Growth and Broodstock Diet n-3 LC-PUFA Levels on Reproductive Performance of Gilthead Seabream, Sparus aurata

Author(s): Ferosekhan S, Turkmen S, Pérez-García C, Hanlin X, Gómez A, Shamna N, Afonso JM, Rosenlund G, Fontanillas R, Gracia A, Izquierdo MS, Kaushik S
Published in: Animals, 11(2), 2021, Page(s) 519, ISSN 2076-2615
Publisher: MDPI
DOI: 10.3390/ani11020519

Diet and host genetics drive the bacterial and fungal intestinal metatranscriptome of gilthead sea bream

Author(s): Naya-Català F, Piazzon MC, Calduch-Giner JÀ, Sitja-Bobadilla A, Pérez-Sánchez J.
Published in: Frontiers in Microbiology, 13, 2022, Page(s) 883738, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2022.883738

Using Glycerol to Produce European Sea Bass Feed With Oleaginous Microbial Biomass: Effects on Growth Performance, Filet Fatty Acid Profile, and FADS2 Gene Expression

Author(s): Genciana Terova, Federico Moroni, Micaela Antonini, Stefano Bertacchi, Chiara Pesciaroli, Paola Branduardi, Massimo Labra, Danilo Porro, Chiara Ceccotti, Simona Rimoldi
Published in: Frontiers in Marine Science, 8, 2021, Page(s) 1115, ISSN 2296-7745
Publisher: Frontiers Media SA
DOI: 10.3389/fmars.2021.715078

Dietary Phytogenics and Galactomannan Oligosaccharides in Low Fish Meal and Fish Oil-Based Diets for European Sea Bass (Dicentrarchus labrax) Juveniles: Effects on Gill Structure and Health and Implications on Oxidative Stress Status

Author(s): Silvia Torrecillas, Genciana Terova, Alex Makol, Antonio Serradell, Victoria Valdenegro-Vega, Marisol Izquierdo, Felix Acosta, Daniel Montero
Published in: Frontiers in Immunology, 12, 2021, Page(s) 18, ISSN 1664-3224
Publisher: Frontiers Media SA
DOI: 10.3389/fimmu.2021.663106

Intestinal microbial communities of rainbow trout (Oncorhynchus mykiss) may be improved by feeding a Hermetia illucens meal/low-fishmeal diet

Author(s): Simona Rimoldi, Micaela Antonini, Laura Gasco, Federico Moroni, Genciana Terova
Published in: Fish Physiology and Biochemistry, 2021, Page(s) 1-16, ISSN 0920-1742
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s10695-020-00918-1

Effect of partial substitution of fishmeal with insect meal (Hermetia illucens) on gut neuromuscular function in Gilthead sea bream (Sparus aurata)

Author(s): Annalisa Bosi, Davide Banfi, Federico Moroni, Chiara Ceccotti, Maria Cecilia Giron, Micaela Antonini, Cristina Giaroni, Genciana Terova
Published in: Scientific Reports, 11/1, 2021, Page(s) 21788, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-01242-1

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