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Integrating a novel layer of synthetic biology tools in Pseudomonas, inspired by bacterial viruses

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Publications

Exploring the synthetic biology potential of bacteriophages for engineering non-model bacteria

Author(s): Eveline-Marie Lammens, Pablo Ivan Nikel, Rob Lavigne
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
DOI: 10.1038/s41467-020-19124-x

SAPPHIRE: a neural network based classifier for σ70 promoter prediction in Pseudomonas

Author(s): Lucas Coppens, Rob Lavigne
Published in: BMC Bioinformatics, Issue 21/1, 2020, ISSN 1471-2105
DOI: 10.1186/s12859-020-03730-z

‘Drc’, a structurally novel ssDNA-binding transcriptionregulator of N4-related bacterial viruses

Author(s): Maarten Boon, Elke De Zitter, Jeroen De Smet, Jeroen Wagemans, Marleen Voet, Lisa Friederike Pennemann, Thomas Schalk, Konstantin Kuznedelov, Konstantin Severinov, Luc Van Meervelt, Marc De Maeyer, Rob Lavigne
Published in: Nucleic Acids Research, Issue 48/1, 2020, ISSN 0305-1048
DOI: 10.1093/nar/gkz1048

Introducing differential RNA-seq mapping to track the early infection phase for Pseudomonas phage ɸKZ

Author(s): Laura Wicke, Falk Ponath, Lucas Coppens, Milan Gerovac, Rob Lavigne, Jörg Vogel
Published in: RNA Biology, 2020, ISSN 1547-6286
DOI: 10.1080/15476286.2020.1827785

A Grad-seq View of RNA and Protein Complexes in Pseudomonas aeruginosa under Standard and Bacteriophage Predation Conditions

Author(s): Milan Gerovac, Laura Wicke, Kotaro Chihara, Cornelius Schneider, Rob Lavigne, Jörg Vogel
Published in: mBio, Issue 12/1, 2021, ISSN 2150-7511
DOI: 10.1128/mbio.03454-20

Bacteriophages as drivers of bacterial virulence and their potential for biotechnological exploitation

Author(s): Kaat Schroven, Abram Aertsen, Rob Lavigne
Published in: FEMS Microbiology Reviews, Issue 45/1, 2020, ISSN 1574-6976
DOI: 10.1093/femsre/fuaa041

Differential transcription profiling of the phage LUZ19 infection process in different growth media

Author(s): Ana Brandão, Diana P. Pires, Lucas Coppens, Marleen Voet, Rob Lavigne, Joana Azeredo
Published in: RNA Biology, 2021, Page(s) 1-13, ISSN 1547-6286
DOI: 10.1080/15476286.2020.1870844