Deliverables
Full-cohort individual MEG brain dynamics measures at the disposal of other WPs, harmonized with Task 3.3 M36 deliverable
Fullcohort individual MEG brain dynamics measures at the disposal of other WPs harmonized with Task 33 M36 deliverable
Integrated, open source terminology versioning and management tool CTS2 compliant application shared with project partnersStakeholder Conference: Specific issues of neurodegenerative diseases: The patients’ perspective
Stakeholder Conference Specific issues of neurodegenerative diseases The patients perspective
Framework for multi-modal integrated annotations established and in useFramework for multimodal integrated annotations established and in use
Group level SEEG brain dynamics measures and analysis pipeline for SEEGShort list of candidate mechanisms to be used in personalized simulations. The short list will be explained and motivated in a dedicated Webinar that will be made publicly available
Short list of candidate mechanisms to be used in personalized simulations The short list will be explained and motivated in a dedicated Webinar that will be made publicly available
Digital atlas that maps signaling pathways on corresponding brain regions for different neurodegenerative states in humansInitial version of full-scope containerized pipeline developed
Initial version of fullscope containerized pipeline developed
Stakeholder conference on GDPR-impactStakeholder conference on GDPRimpact
Evaluation and optimization of pipeline for practical use concludedWorkshop with policy-makers
Workshop with policymakers
Full-cohort MEG time series in BIDS share and analysis pipeline readyFullcohort MEG time series in BIDS share and analysis pipeline ready
Most appropriate RS-processing pipelines for TVB modelling finishedMost appropriate RSprocessing pipelines for TVB modelling finished
Establishment of contact with relevant external stakeholdersReport on VBC operation report and published services on EOSC/EGI Marketplace
Report on VBC operation report and published services on EOSCEGI Marketplace
Publication of a study on deconfounding for inferenceComplete, updated semantic framework for neurodegeneration research documented
Evaluation of cross-modal atlas-based compression for machine-learning
Evaluation of crossmodal atlasbased compression for machinelearning
Report on cloud implementation strategy applying “trusted cloud” principlesPaper manuscript describing the initial characterization of the studies, the equivalence of their variables and the summary statistics (mean, standard deviation etc.) submitted to relevant journal
Data catalogue with harmonized annotations at project
Text mining workflow to use ontologies and terminologies in OLS for information extraction of causeandeffect statements The demonstration will be delivered as a Webinar
A functionally integrated version of VBC is evaluated for therapeutical targetsShort title: Semantically enhanced multi-viewer that embeds a newly developed TVB 3D viewer
Full title A semantically enhanced multiviewer that embeds a newly developed TVB 3D viewer that allows for integration of personalized 3D coordinates with knowledge about pathways and mechanisms in situ The deliverable for this task is a joint highranking journal publication of the teams building this environment
Publications
Author(s):
Colin Birkenbihl; Colin Birkenbihl; Mohammad Asif Emon; Mohammad Asif Emon; Henri A. Vrooman; Sarah Westwood; Simon Lovestone; Martin Hofmann-Apitius; Martin Hofmann-Apitius; Holger Fröhlich; Holger Fröhlich
Published in:
The E P M A Journal, Issue 1, 2020, ISSN 1878-5077
Publisher:
BioMed Central
DOI:
10.1007/s13167-020-00216-z
Author(s):
Justin W.M. Domhof; Simon B. Eickhoff; Oleksandr V. Popovych
Published in:
NeuroImage 257, 119321 (2022). doi:10.1016/j.neuroimage.2022.119321, Issue 13, 2022, ISSN 1053-8119
Publisher:
Academic Press
DOI:
10.1016/j.neuroimage.2022.119321
Author(s):
Clément Mantoux; Baptiste Couvy-Duchesne; Federica Cacciamani; Stéphane Epelbaum; Stanley Durrleman; Stéphanie Allassonnière
Published in:
Entropy, Issue 2, 2021, ISSN 1099-4300
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/e23040490
Author(s):
Justin W. M. Domhof; Kyesam Jung; Simon B. Eickhoff; Oleksandr V. Popovych
Published in:
Network neuroscience, Issue 5(3), 2021, Page(s) 798–830, ISSN 2472-1751
Publisher:
MIT Press Journals
DOI:
10.1162/netn_a_00202
Author(s):
Hashemi, M., Vattikonda, A.N., Sip, V., Diaz-Pier, S., Peyser, A., Wang, H., Guye, M., Bartolomei, F., Woodman, M.M. and Jirsa, V.K.
Published in:
PLoS computational biology, 2021, ISSN 1553-7358
Publisher:
Public Library of Science
DOI:
10.1371/journal.pcbi.1009129
Author(s):
Oleksandr V. Popovych, Kyesam Jung, Thanos Manos, Sandra Diaz-Pier, Felix Hoffstaedter, Jan Schreiber, B.T. Thomas Yeo, Simon B. Eickhoff
Published in:
NeuroImage, Issue 236, 2021, Page(s) 118201, ISSN 1053-8119
Publisher:
Academic Press
DOI:
10.1016/j.neuroimage.2021.118201
Author(s):
Koval, Igor; Bône, Alexandre; Louis, Maxime; Lartigue, Thomas; Bottani, Simona; Marcoux, Arnaud; Samper-Gonzalez, Jorge; Burgos, Ninon; Charlier, Benjamin; Bertrand, Anne; Epelbaum, Stéphane; Colliot, Olivier; Allassonnière, Stéphanie; Durrleman, Stanley
Published in:
EISSN: 2045-2322, Issue 2, 2021, ISSN 2045-2322
Publisher:
Nature Publishing Group
DOI:
10.1038/s41598-021-87434-1
Author(s):
Bône, Alexandre; Colliot, Olivier; Durrleman, Stanley
Published in:
International Journal of Computer Vision, Issue 2, 2020, ISSN 0920-5691
Publisher:
Kluwer Academic Publishers
DOI:
10.1007/s11263-020-01343-w
Author(s):
Birkenbihl, Colin; Salimi, Yasamin; Fröhlich, Holger
Published in:
Fraunhofer SCAI, Issue 2, 2021, ISSN 1552-5279
Publisher:
Wiley
DOI:
10.1002/alz.12387
Author(s):
Kyesam Jung; Simon B. Eickhoff; Oleksandr V. Popovych
Published in:
NeuroImage, Issue 237, 2021, Page(s) 118176, ISSN 1053-8119
Publisher:
Academic Press
DOI:
10.1016/j.neuroimage.2021.118176
Author(s):
Demian Battaglia; Thomas Boudou; Thomas Boudou; Enrique C. A. Hansen; Enrique C. A. Hansen; Diego Lombardo; Sabrina Chettouf; Sabrina Chettouf; Andreas Daffertshofer; Anthony R. McIntosh; Joelle Zimmermann; Petra Ritter; Viktor K. Jirsa
Published in:
"NeuroImage, Elsevier, 2020, 222, pp.117156. ⟨10.1016/j.neuroimage.2020.117156⟩", Issue 2, 2020, ISSN 1053-8119
Publisher:
Academic Press
DOI:
10.1016/j.neuroimage.2020.117156
Author(s):
Michael Hanke; Franco Pestilli; Adina Wagner; Christopher J. Markiewicz; Jean-Baptiste Poline; Yaroslav O. Halchenko
Published in:
Neuroforum, 2021, ISSN 2363-7013
Publisher:
Walter de Gruyter GmbH
DOI:
10.1515/nf-2020-0037
Author(s):
Yaroslav O. Halchenko, Kyle Meyer, Benjamin Poldrack, Debanjum Singh Solanky, Adina S. Wagner, Jason Gors, Dave MacFarlane,Dorian Pustina, Vanessa Sochat, Satrajit S. Ghosh, Christian Mönch, Christopher J. Markiewicz, Laura Waite, Ilya Shlyakhter,Alejandro de la Vega, Soichi Hayashi, Christian Olaf Häusler, Jean-Baptiste Poline, Tobias Kadelka, Kusti Skytén, DorotaJ arecka, David Kennedy, Ted S
Published in:
The Journal of Open Source Software, 2021, ISSN 2475-9066
Publisher:
IGI Global Publishing
DOI:
10.21105/joss.03262
Author(s):
Monica Roascio, Andrea Canessa, Rosella Trò, Pietro Mattioli, Francesco Famà, Laura Giorgetti, Nicola Girtler, Beatrice Orso, Silvia Morbelli, Flavio Nobili, Dario Arnaldi, Gabriele Arnulfo
Published in:
Sleep, 2021, ISSN 0161-8105
Publisher:
The American Academy of Sleep Medicine
DOI:
10.1093/sleep/zsab232
Author(s):
Diogo Santos-Pata; Adrián F. Amil; Ivan Georgiev Raikov; César Rennó-Costa; Anna Mura; Ivan Soltesz; Paul F.M.J. Verschure
Published in:
iScience, Vol 24, Iss 5, Pp 102501- (2021), Issue 2, 2021, ISSN 2589-0042
Publisher:
Cell Press
DOI:
10.1016/j.isci.2021.102501
Author(s):
Jérôme Dockès; Russell A. Poldrack; Romain Primet; Hande Gözükan; Tal Yarkoni; Fabian M. Suchanek; Bertrand Thirion; Gaël Varoquaux
Published in:
2020, Issue 2, 2020, ISSN 2050-084X
Publisher:
eLife Sciences Publications
DOI:
10.7554/elife.53385
Author(s):
Franziska Scheibe; Franziska Scheibe; Wolf-Julian Neumann; Catharina Lange; Michael Scheel; Christian Furth; Martin Köhnlein; Philipp Mergenthaler; Jörg Schultze‐Amberger; Paul Triebkorn; Petra Ritter; Andrea A. Kühn; Andreas Meisel
Published in:
European Journal of Neurology, Issue 2, 2021, ISSN 1468-1331
Publisher:
Wiley
DOI:
10.1111/ene.14326
Author(s):
Eickhoff, Claudia R; Hoffstaedter, Felix; Caspers, Julian; Reetz, Kathrin; Mathys, Christian; Dogan, Imis; Amunts, Katrin; Schnitzler, Alfons; Eickhoff, Simon B
Published in:
Brain communications, 2021, ISSN 2632-1297
Publisher:
Oxford University Press on behalf of the Guarantors of Brain
DOI:
10.1093/braincomms/fcab191
Author(s):
Thomas Lartigue; Simona Bottani; Stephanie Baron; Olivier Colliot; Stanley Durrleman; Stéphanie Allassonnière
Published in:
"IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, 2021, 43 (9), pp.3196-3213. ⟨10.1109/TPAMI.2020.2980542⟩", Issue 2, 2021, ISSN 0162-8828
Publisher:
Institute of Electrical and Electronics Engineers
DOI:
10.1109/tpami.2020.2980542
Author(s):
F. Scheibe, W. J. Neumann, C. Lange, M. Scheel, C. Furth, M. Köhnlein, P. Mergenthaler, J. Schultze‐Amberger, P. Triebkorn, P. Ritter, A. A. Kühn, A. Meisel
Published in:
European Journal of Neurology, 2020, ISSN 1351-5101
Publisher:
Blackwell Publishing Inc.
DOI:
10.1111/ene.14326
Author(s):
Sabrina Chettouf, Laura M. Rueda-Delgado, Ralph de Vries, Petra Ritter, Andreas Daffertshofer
Published in:
Neuroscience & Biobehavioral Reviews, Issue 113, 2020, Page(s) 39-50, ISSN 0149-7634
Publisher:
Pergamon Press Ltd.
DOI:
10.1016/j.neubiorev.2020.03.002
Author(s):
Kelly Shen, Gleb Bezgin, Michael Schirner, Petra Ritter, Stefan Everling, Anthony R. McIntosh
Published in:
Scientific Data, Issue 6/1, 2019, ISSN 2052-4463
Publisher:
Springer Nature
DOI:
10.1038/s41597-019-0129-z
Author(s):
Leon Stefanovski, Paul Triebkorn, Andreas Spiegler, Margarita-Arimatea Diaz-Cortes, Ana Solodkin, Viktor Jirsa, Anthony Randal McIntosh, Petra Ritter
Published in:
Frontiers in Computational Neuroscience, Issue 13, 2019, ISSN 1662-5188
Publisher:
Frontiers Research Foundation
DOI:
10.3389/fncom.2019.00054
Author(s):
Hannelore Aerts, Michael Schirner, Thijs Dhollander, Ben Jeurissen, Eric Achten, Dirk Van Roost, Petra Ritter, Daniele Marinazzo
Published in:
NeuroImage, Issue 213, 2020, Page(s) 116738, ISSN 1053-8119
Publisher:
Academic Press
DOI:
10.1016/j.neuroimage.2020.116738
Author(s):
Russell A Poldrack, Franklin Feingold, Michael J Frank, Padraig Gleeson, Gilles de Hollander, Quentin J. M. Huys, Bradley C. Love, Christopher J. Markiewicz, Rosalyn Moran, Petra Ritter, Timothy T. Rogers, Brandon M. Turner, Tal Yarkoni, Ming Zhan, Jonathan D. Cohen
Published in:
Computational Brain & Behavior, Issue 2/3-4, 2019, Page(s) 229-232, ISSN 2522-0861
Publisher:
Springer Nature
DOI:
10.1007/s42113-019-00062-x
Author(s):
Vera Röhr, Rico Berner, Ewandson L. Lameu, Oleksandr V. Popovych, Serhiy Yanchuk
Published in:
PLOS ONE, Issue 14/11, 2019, Page(s) e0225094, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0225094
Author(s):
M. Hashemi, A.N. Vattikonda, V. Sip, M. Guye, F. Bartolomei, M.M. Woodman, V.K. Jirsa
Published in:
NeuroImage, Issue 217, 2020, Page(s) 116839, ISSN 1053-8119
Publisher:
Academic Press
DOI:
10.1016/j.neuroimage.2020.116839
Author(s):
Diogo Santos-Pata, Riccardo Zucca, Héctor López-Carral, Paul F.M.J. Verschure
Published in:
Neural Networks, Issue 119, 2019, Page(s) 66-73, ISSN 0893-6080
Publisher:
Pergamon Press Ltd.
DOI:
10.1016/j.neunet.2019.06.011
Author(s):
J.-Y. Puigbò, X. D. Arsiwalla, M. A. González-Ballester, P. F. M. J. Verschure
Published in:
Molecular Neurobiology, Issue 57/1, 2020, Page(s) 139-149, ISSN 0893-7648
Publisher:
Humana Press, Inc.
DOI:
10.1007/s12035-019-01764-w
Author(s):
Roberta Armignacco; T. Lartigue; Anne Jouinot; Amandine Septier; Mario Neou; C. Gaspar; Karine Perlemoine; Lucas Bouys; Leah T. Braun; Anna Riester; S. Allassonnière; Maria-Christina Zennaro; Martin Reincke; Jérôme Bertherat; F Beuschlein; Guillaume Assié
Published in:
https://hal.archives-ouvertes.fr/hal-03035962, Issue 2, 2020, ISSN 0003-4266
Publisher:
Elsevier Masson
DOI:
10.1016/j.ando.2020.07.117
Author(s):
Wischnewski, Kevin J.; Eickhoff, Simon B.; Jirsa, Viktor K.; Popovych, Oleksandr V.
Published in:
Scientific Reports, Issue 30, 2022, ISSN 2045-2322
Publisher:
Nature Publishing Group
DOI:
10.1038/s41598-022-07860-7
Author(s):
Colin Birkenbihl; Colin Birkenbihl; Yasamin Salimi; Yasamin Salimi; Daniel Domingo-Fernández; Daniel Domingo-Fernández; Simon Lovestone; Holger Fröhlich; Holger Fröhlich; Martin Hofmann-Apitius; Martin Hofmann-Apitius; Japanese Alzheimer's Disease Neuroimaging Initiative
Published in:
Alzheimer's & Dementia : Translational Research & Clinical Interventions, Issue 1, 2020, ISSN 1552-5279
Publisher:
Wiley
DOI:
10.1002/trc2.12102
Author(s):
Fulvia Palesi; Fulvia Palesi; Roberta Maria Lorenzi; Claudia Casellato; Petra Ritter; Petra Ritter; Viktor Jirsa; Claudia A.M. Gandini Wheeler-Kingshott; Claudia A.M. Gandini Wheeler-Kingshott; Claudia A.M. Gandini Wheeler-Kingshott; Egidio D’Angelo; Egidio D’Angelo
Published in:
Frontiers in Cellular Neuroscience, Vol 14 (2020), Issue 2, 2020, ISSN 1662-5102
Publisher:
Frontiers Research Foundation
DOI:
10.3389/fncel.2020.00240
Author(s):
Leon Stefanovski; Leon Stefanovski; Paul Triebkorn; Paul Triebkorn; Andreas Spiegler; Andreas Spiegler; Margarita-Arimatea Diaz-Cortes; Margarita-Arimatea Diaz-Cortes; Margarita-Arimatea Diaz-Cortes; Ana Solodkin; Viktor Jirsa; Anthony Randal McIntosh; Petra Ritter; Petra Ritter; Petra Ritter; for the Alzheimer's Disease Neuroimaging Initiative
Published in:
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700386/, Issue 2, 2020, ISSN 1662-5188
Publisher:
Frontiers Research Foundation
DOI:
10.17169/refubium-25500
Author(s):
Adina Wagner; Laura Waite; Małgorzata Wierzba; Felix Hoffstaedter; Alexander Q. Waite; Benjamin Poldrack; Simon B. Eickhoff; Michael Hanke
Published in:
Scientific data 9(1), 80 (2022). doi:10.1038/s41597-022-01163-2, Issue 33, 2022, ISSN 2052-4463
Publisher:
Nature Publishing Group
DOI:
10.1101/2021.10.12.464122
Author(s):
Till F. M. Andlauer; Thomas W. Mühleisen; Felix Hoffstaedter; Alexander Teumer; Katharina Wittfeld; Anja Teuber; Céline S. Reinbold; Dominik Grotegerd; Robin Bülow; Svenja Caspers; Udo Dannlowski; Stefan Herms; Per Hoffmann; Tilo Kircher; Heike Minnerup; Susanne Moebus; Igor Nenadić; Henning Teismann; Uwe Völker; Amit Etkin; Klaus Berger; Hans J. Grabe; Markus M. Nöthen; Katrin Amunts; Simon
Published in:
Translational Psychiatry, Vol 11, Iss 1, Pp 1-13 (2021), Issue 2, 2021, ISSN 2158-3188
Publisher:
Nature Publishing Group
DOI:
10.1038/s41398-021-01317-7
Author(s):
Gianluca Susi; Pilar Garcés; Emanuele Paracone; Alessandro Cristini; Mario Salerno; Fernando Maestú; Ernesto Pereda
Published in:
Scientific Reports, Vol 11, Iss 1, Pp 1-17 (2021), Issue 1, 2021, ISSN 2045-2322
Publisher:
Nature Publishing Group
DOI:
10.1038/s41598-021-91513-8
Author(s):
Kamalaker Dadi; Gaël Varoquaux; Antonia Machlouzarides-Shalit; Krzysztof J. Gorgolewski; Demian Wassermann; Bertrand Thirion; Arthur Mensch
Published in:
2020, Issue 2, 2020, ISSN 1053-8119
Publisher:
Academic Press
DOI:
10.1016/j.neuroimage.2020.117126
Author(s):
Thomas Lartigue; Stanley Durrleman; Stéphanie Allassonnière
Published in:
2020, Issue 2, 2020, ISSN 2331-8422
Publisher:
Cornell University
DOI:
10.1007/s42979-021-00865-5
Author(s):
Schirner, Michael; Domide, Lia; Perdikis, Dionysios; Triebkorn, Paul; Stefanovski, Leon; Pai, Roopa; Popa, Paula; Valean, Bogdan; Palmer, Jessica; Langford, Chloê; Blickensdörfer, André; van der Vlag, Michiel; Diaz-Pier, Sandra; Peyser, Alexander; Klijn, Wouter; Pleiter, Dirk; Nahm, Anne; Schmid, Oliver; Woodman, Marmaduke; Zehl, Lyuba; Fousek, Jan; Petkoski, Spase; Kusch, Lionel; Hashemi, Meys
Published in:
ArXiv, 2021
Publisher:
Cornell University
Author(s):
Paul Triebkorn; Joelle Zimmermann; Leon Stefanovski; Dipanjan Roy; Ana Solodkin; Viktor K. Jirsa; Gustavo Deco; Michael Breakspear; Anthony R. McIntosh; Petra Ritter
Published in:
Issue 2, 2020, ISBN 978-0-879699-41-3
Publisher:
Cold Spring Habor Laboratory
DOI:
10.1101/2020.03.26.009795
Author(s):
Paul F. M. J. Verschure; Diogo Santos-Pata
Published in:
bioRxiv, Issue 7, 2020
Publisher:
Cold Spring Harbor Laboratory
DOI:
10.1101/2020.01.11.902742
Author(s):
Lartigue, Thomas; Durrleman, Stanley; Allassonnière, Stéphanie
Published in:
2020, Issue 2, 2021, ISSN 2331-8422
Publisher:
Cornell University
Author(s):
Diogo Santos-Pata, Belen Rubio Ballester, Riccardo Zucca, Carlos Stefano Filho, Sara Regina Almeida, Li Li Min, Gabriela Castellano, Paul FMJ Verschure
Published in:
medRxiv, 2020
Publisher:
CSHL
DOI:
10.1101/2020.01.19.20017996
Author(s):
Koval, Igor; Bône, Alexandre; Louis, Maxime; Bottani, Simona; Marcoux, Arnaud; Samper-Gonzalez, Jorge; Burgos, Ninon; CHARLIER, Benjamin; Bertrand, Anne; Epelbaum, Stéphane; Colliot, Olivier; Allassonnière, Stéphanie; Durrleman, Stanley
Published in:
2018, Issue 2, 2018
Publisher:
INRIA
Author(s):
Sara, Mora; Sumit, Madan; Stephan, Gebel; Mauro, Giacomini
Published in:
Fraunhofer SCAI, Issue 1, 2020
Publisher:
IOS Press
Author(s):
Martin, Lucas; Josse, Julie; Thirion, Bertrand
Published in:
MICCAI BrainLes 2020 workshop, Oct 2020, Lima, Peru, Issue 1, 2021
Publisher:
Springer
DOI:
10.1007/978-3-030-72084-1_9
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