Research platform on antibiotic resistance spread through wastewater treatment plants

Livrables

Protocol on sampling, detection and quantification of ARGs

We will define and select standard methods for ARGs sampling and quantification publish it as freely accessible protocol

2 joint publications accepted, 2 submitted

The consortium will publish at least 6 joint publications with the following attributesUCTs researchers involved in each of themAt least three partners from the consortium involved in each of themAll journals in the Q1 group within respective field according to Scientific Journal Rankings and IF 35Foreseen topics for these publications are ARGs detection methods ARGs quantification in various WWTPs ARGs release from hospitals ARGs presence in recycled water eg grey water recovery etc The topics will be always consistent with a complementary research run at one of the partnersResponsible partner UCP

Joint project proposal I

The proposal will be submitted by at least two members of the consortium and UCT will always be involved At least one of the two proposals submitted will be coordinated by UCT Proposed topics for the proposals are 1 thorough survey of ARGs in WWTPs effluents in Europe 2 Elucidation of the mechanism of ARGs propagation and transfers in WWTPs 3 wastewater recycling systems and spread through decentralized systems etc This list may be broadened andor modified based on future research results and the needs of European community expressed by future project callsResponsible partner Coordinator of the project being submitted

2 joint papers accepted

The consortium will publish at least 6 joint publications with the following attributesUCTs researchers involved in each of themAt least three partners from the consortium involved in each of themAll journals in the Q1 group within respective field according to Scientific Journal Rankings and IF 35Foreseen topics for these publications are ARGs detection methods ARGs quantification in various WWTPs ARGs release from hospitals ARGs presence in recycled water eg grey water recovery etc The topics will be always consistent with a complementary research run at one of the partnersResponsible partner UCP

YouTube video 1

Publishing promotional video on YouTube (year 1)

Summer school for broader expert audience.

The 5day summer school will give an overview in the current state of the art in ARGs related research It will consist of 5 major blocksARGs occurrence and effects in the environment and in sewage systems Variety of ARGs and mechanisms of ARGs spread in sewage management systemsARGs detection and quantificationSampling and sample conservationWorkshop on ARGs detection and sampling elective lab work or field visit

ResearchGate and LinkedIn account

Creation and management of platform/project accounts in the social networks (Twitter, LinkedIn, Facebook, ResearchGate, YouTube, TED).

YouTube video 3

Publishing promotional video on YouTube year 3

YouTube video 2

Publishing promotional video on YouTube year 2

REPARES platform

A website which will serve as a knowledge platform for both academic and non-academic sector. The platform will contain a news feed on recent advances in ARG/ARB research, discussion forum, link to the ARG database and MiDAS, link to social media, list of most relevant papers etc.

Data Management Plan

A document outlining how research data will be handled during a research project and after finalisation describing what data will be collected generated what methodology and standards are used whether and how this data will be shared andor made open and how it will be curated and preserved

Publications

Critical Reviews in Environmental Science and Technology - Framework for establishing regulatory guidelines to control antibiotic resistance in treated effluents

Auteurs: Célia M. Manaia
Publié dans: Critical Reviews in Environmental Science and Technology, Numéro 53, 2023, Page(s) 754-779, ISSN 1064-3389
Éditeur: Taylor & Francis
DOI: 10.1080/10643389.2022.2085956

Monitoring antibiotic resistance genes in wastewater environments: The challenges of filling a gap in the One-Health cycle

Auteurs: Aleksandra Miłobedzka, Catarina Ferreira, Ivone Vaz-Moreira, David Calderón-Franco, Adrian Gorecki, Sabina Purkrtova, Jan Bartacek, Lukasz Dziewit, Caitlin M. Singleton, Per Halkjær Nielsen, David Gregory Weissbrodt, Célia M. Manaia
Publié dans: Journal of Hazardous Materials, Numéro 424, 2022, Page(s) 127407, ISSN 0304-3894
Éditeur: Elsevier BV
DOI: 10.1016/j.jhazmat.2021.127407

Development and validation of novel PCR primers for identification of plasmid-mediated colistin resistance (mcr) genes in various environmental settings

Auteurs: Adrian Gorecki; Marcin Musialowski; Mikolaj Wolacewicz; Przemyslaw Decewicz; Catarina Ferreira; Dana Vejmelkova; Małgorzata Grzesiuk; Célia M. Manaia; Jan Bartacek; Lukasz Dziewit
Publié dans: Journal of Hazardous Materials, Numéro 4, 2022, Page(s) 127936, ISSN 0304-3894
Éditeur: Elsevier BV
DOI: 10.1016/j.jhazmat.2021.127936

Impact of various killing methods on EMA/PMA-qPCR efficacy

Auteurs: Lucie Vondrakova, Hana Turonova, Vladimir Scholtz, Jarmila Pazlarova, Katerina Demnerova
Publié dans: Food Control, Numéro 85, 2018, Page(s) 23-28, ISSN 0956-7135
Éditeur: Elsevier BV
DOI: 10.1016/j.foodcont.2017.09.013

Disinfection of archival documents using thyme essential oil, silver nanoparticles misting and low temperature plasma

Auteurs: Katarzyna Pietrzak, Anna Otlewska, Dariusz Danielewicz, Katarzyna Dybka, Domenico Pangallo, Lucia Kraková, Andrea Puškárová, Mária Bučková, Vladimír Scholtz, Michal Ďurovič, Barbara Surma-Ślusarska, Kateřina Demnerová, Beata Gutarowska
Publié dans: Journal of Cultural Heritage, Numéro 24, 2017, Page(s) 69-77, ISSN 1296-2074
Éditeur: Elsevier Masson
DOI: 10.1016/j.culher.2016.10.011

Importance of microbial defence systems to bile salts and mechanisms of serum cholesterol reduction

Auteurs: Šárka Horáčková, Milada Plocková, Kateřina Demnerová
Publié dans: Biotechnology Advances, Numéro 36/3, 2018, Page(s) 682-690, ISSN 0734-9750
Éditeur: Elsevier BV
DOI: 10.1016/j.biotechadv.2017.12.005

Bioremediation of chlorophenol-contaminated sawmill soil using pilot-scale bioreactors under consecutive anaerobic-aerobic conditions

Auteurs: Eglantina Lopez-Echartea, Michal Strejcek, Vit Mateju, Simona Vosahlova, Robin Kyclt, Katerina Demnerova, Ondrej Uhlik
Publié dans: Chemosphere, Numéro 227, 2019, Page(s) 670-680, ISSN 0045-6535
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.chemosphere.2019.04.036

Linking toxicity profiles to pollutants in sludge and sediments

Auteurs: Hana Stiborova, Michal Kolar, Jana Vrkoslavova, Jana Pulkrabova, Jana Hajslova, Katerina Demnerova, Ondrej Uhlik
Publié dans: Journal of Hazardous Materials, Numéro 321, 2017, Page(s) 672-680, ISSN 0304-3894
Éditeur: Elsevier BV
DOI: 10.1016/j.jhazmat.2016.09.051

Characterizing Biochar as Alternative Sorbent for Oil Spill Remediation

Auteurs: Ludovica Silvani, Blanka Vrchotova, Petr Kastanek, Katerina Demnerova, Ida Pettiti, Marco Petrangeli Papini
Publié dans: Scientific Reports, Numéro 7/1, 2017, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/srep43912

Distinct Communities of Poplar Endophytes on an Unpolluted and a Risk Element-Polluted Site and Their Plant Growth-Promoting Potential In Vitro

Auteurs: C. S. Schmidt, P. Lovecká, L. Mrnka, A. Vychodilová, M. Strejček, M. Fenclová, K. Demnerová
Publié dans: Microbial Ecology, Numéro 75/4, 2018, Page(s) 955-969, ISSN 0095-3628
Éditeur: Springer Verlag
DOI: 10.1007/s00248-017-1103-y

Effects of barium on the pathways of anaerobic digestion

Auteurs: V. Wyman, A. Serrano, R. Borja, A. Jiménez, A. Carvajal, M. Lenz, J. Bartacek, F.G. Fermoso
Publié dans: Journal of Environmental Management, Numéro 232, 2019, Page(s) 397-403, ISSN 0301-4797
Éditeur: Academic Press
DOI: 10.1016/j.jenvman.2018.11.065

Taxonomy of the traditional medicinal plant genus Ferula (Apiaceae) is confounded by incongruence between nuclear rDNA and plastid DNA

Auteurs: Mehrnoush Panahi, łukasz Banasiak, Marcin Piwczyński, Radosław Puchałka, Mohammad Reza Kanani, Alexei A Oskolski, Daniel Modnicki, Aleksandra Miłobędzka, Krzysztof Spalik
Publié dans: Botanical Journal of the Linnean Society, Numéro 188/2, 2018, Page(s) 173-189, ISSN 0024-4074
Éditeur: Blackwell Publishing Inc.
DOI: 10.1093/botlinnean/boy055

Removal of H2S by a continuous microalgae-based photosynthetic biogas upgrading process

Auteurs: Leslie Meier, Dana Stará, Jan Bartacek, David Jeison
Publié dans: Process Safety and Environmental Protection, Numéro 119, 2018, Page(s) 65-68, ISSN 0957-5820
Éditeur: Institution of Chemical Engineers
DOI: 10.1016/j.psep.2018.07.014

Microaeration through a biomembrane for biogas desulfurization: lab-scale and pilot-scale experiences

Auteurs: Lucie Pokorna-Krayzelova, Jan Bartacek, Shelmith Nyawira Theuri, Camilo Andres Segura Gonzalez, Jindrich Prochazka, Eveline I. P. Volcke, Pavel Jenicek
Publié dans: Environmental Science: Water Research & Technology, Numéro 4/8, 2018, Page(s) 1190-1200, ISSN 2053-1400
Éditeur: Royal Society of Chemistry
DOI: 10.1039/c8ew00232k

Psychrophilic anaerobic treatment of sewage: Biomethane potential, kinetics and importance of inoculum selection

Auteurs: Petr Dolejs, Ghinwa El Tayar, Dana Vejmelkova, Martin Pecenka, Martina Polaskova, Jan Bartacek
Publié dans: Journal of Cleaner Production, Numéro 199, 2018, Page(s) 93-100, ISSN 0959-6526
Éditeur: Elsevier BV
DOI: 10.1016/j.jclepro.2018.07.134

Effect of psychrophilic temperature shocks on a gas-lift anaerobic membrane bioreactor (Gl-AnMBR) treating synthetic domestic wastewater

Auteurs: Petr Dolejs, Onur Ozcan, Robert Bair, Javhklan Ariunbaatar, Jan Bartacek, Piet N.L. Lens, Daniel H. Yeh
Publié dans: Journal of Water Process Engineering, Numéro 16, 2017, Page(s) 108-114, ISSN 2214-7144
Éditeur: Elsevier Limited
DOI: 10.1016/j.jwpe.2016.12.005

Treatment of acid mine drainage by forward osmosis: Heavy metal rejection and reverse flux of draw solution constituents

Auteurs: Bárbara Vital, Jan Bartacek, J.C. Ortega-Bravo, David Jeison
Publié dans: Chemical Engineering Journal, Numéro 332, 2018, Page(s) 85-91, ISSN 1385-8947
Éditeur: Elsevier BV
DOI: 10.1016/j.cej.2017.09.034

High-Rate Partial Nitritation of Municipal Wastewater after Psychrophilic Anaerobic Pretreatment

Auteurs: Vojtech Kouba, Dana Vejmelkova, Eva Proksova, Helene Wiesinger, Martin Concha, Petr Dolejs, Jakub Hejnic, Pavel Jenicek, Jan Bartacek
Publié dans: Environmental Science & Technology, Numéro 51/19, 2017, Page(s) 11029-11038, ISSN 0013-936X
Éditeur: American Chemical Society
DOI: 10.1021/acs.est.7b02078

Quantitative PCR versus metagenomics for monitoring antibiotic resistance genes: balancing high sensitivity and broad coverage

Auteurs: Catarina Ferreira; Saria Otani; Frank Møller Aarestrup; Célia M Manaia
Publié dans: FEMS Microbes, Numéro 3, 2023, ISSN 2633-6685
Éditeur: Oxford University Press
DOI: 10.1093/femsmc/xtad008

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