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Translational SYStemics: Personalised Medicine at the Interface of Translational Research and Systems Medicine

Deliverables

TranSYS School 1

Lead overlooking Body Training Council Natasa Przulj Details Annex 1 Part B Table 22b

Doctoral Schools

ESRs enrolled in doctoral school programmes regulated by M12

TranSYS intranet and extranet / SharePoint in place

Website for data sharing internal CO external PU Sharepoint for easy filling of reports and sharing documents within WGs within TranSYS Boards within TranSYS at large

TranSYS recruitment pages online with ESR vacancies posted (recruitment process+gender plan)

TranSYS recruitment pages online with ESR vacancies posted (recruitment process+gender plan)

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Publications

Economic evaluation in psychiatric pharmacogenomics: a systematic review

Author(s): Kariofyllis Karamperis, Maria Koromina, Panagiotis Papantoniou, Maria Skokou, Filippos Kanellakis, Konstantinos Mitropoulos, Athanassios Vozikis, Daniel J. Müller, George P. Patrinos, Christina Mitropoulou
Published in: The Pharmacogenomics Journal, 21/4, 2021, Page(s) 533-541, ISSN 1470-269X
Publisher: Nature Publishing Group
DOI: 10.1038/s41397-021-00249-1

Guided extraction of genome-scale metabolic models for the integration and analysis of omics data

Author(s): Andrew Walakira, Damjana Rozman, Tadeja Režen, Miha Mraz, Miha Moškon
Published in: Computational and Structural Biotechnology Journal, 19, 2021, Page(s) 3521-3530, ISSN 2001-0370
Publisher: Elsevier
DOI: 10.1016/j.csbj.2021.06.009

Delineating significant genome-wide associations of variants with antipsychotic and antidepressant treatment response: implications for clinical pharmacogenomics

Author(s): Maria Koromina, Stefania Koutsilieri, George P. Patrinos
Published in: Human Genomics, 14/1, 2020, ISSN 1479-7364
Publisher: Springer Nature
DOI: 10.1186/s40246-019-0254-y

The AIMe registry for artificial intelligence in biomedical research.

Author(s): Julian Matschinske; Julian Matschinske; Nicolas Alcaraz; Arriel Benis; Martin Golebiewski; Dominik G. Grimm; Dominik G. Grimm; Lukas Heumos; Tim Kacprowski; Tim Kacprowski; Tim Kacprowski; Olga Lazareva; Markus List; Zakaria Louadi; Zakaria Louadi; Josch Konstantin Pauling; Nico Pfeifer; Richard Röttger; Veit Schwämmle; Gregor Sturm; Alberto Traverso; Kristel Van Steen; Kristel Van Steen; Martie
Published in: VOLUME=18;ISSUE=10;STARTPAGE=1128;ENDPAGE=1131;ISSN=1548-7091;TITLE=Nature Methods, 2, 2021, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/s41592-021-01241-0

Detecting gene–gene interactions from GWAS using diffusion kernel principal components

Author(s): Andrew Walakira; Junior Ocira; Diane Duroux; Ramouna Fouladi; Miha Moškon; Damjana Rozman; Kristel Van Steen
Published in: BMC Bioinformatics 23, 1, 2022, Page(s) Article number: 57 (2022), ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-022-04580-7

An overview of machine learning methods for monotherapy drug response prediction

Author(s): Farzaneh Firoozbakht, Behnam Yousefi, Benno Schwikowski
Published in: Briefings in Bioinformatics, 2021, ISSN 1467-5463
Publisher: Oxford University Press
DOI: 10.1093/bib/bbab408