Intelligent Collections of Food Legumes Genetic Resources for European Agrofood Systems

Informations projet

INCREASE

N° de convention de subvention: 862862

DOI

10.3030/862862

Projet clôturé

Date de signature de la CE 2 Mai 2020

Date de début 1 Mai 2020

Date de fin 30 Avril 2026

Financé au titre de

• SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Coût total

€ 8 826 824,50

Contribution de l’UE

€ 6 999 999,50

Coordonné par

UNIVERSITA POLITECNICA DELLE MARCHE
Italy

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Other (3)

Central data management infrastructure implemented
Final computer vision & deep learning library released
Blockchain approach established and distributed infrastructure released

Documents, reports (7)

Stakeholder Consortium agreement

Stakeholder Consortium Agreement

Workflow on place for assignment of DOIs as unique identifiert

Workflow on place for assignment of DOIs as unique identifiers

DNA available for all the SSD lines
Development of different core collections (R-CORE, T-CORE, H-CORE) for all the species

Development of different core collections RCORE TCORE HCORE for all the species

Harmonized conservation management guidelines
Guidelines for data management in genebanks
Phenotypic data from 1.000 common bean lines evaluated by citizens

Phenotypic data from 1,000 common bean lines evaluated by citizens

Websites, patent fillings, videos etc. (3)

Public project website
Audio-visual material on food legumes GenRes

Audiovisual material on food legumes GenRes

Audio-visual material for citizen science experiment

Audiovisual material for citizen science experiment

Publications

Peer reviewed articles (38)

Intelligent Characterization of Lentil Genetic Resources: Evolutionary History, Genetic Diversity of Germplasm, and the Need for Well-Represented Collections

Auteurs: Azalea Guerra-García, Tania Gioia, Eric von Wettberg, Giuseppina Logozzo, Roberto Papa, Elena Bitocchi, Kirstin E. Bett
Publié dans: Current Protocols, 2021, ISSN 2691-1299
Éditeur: John Wiley & Sons
DOI: 10.1002/cpz1.134

Towards the Development, Maintenance and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Chickpea

Auteurs: Lorenzo Rocchetti, Tania Gioia, Giuseppina Logozzo, Creola Brezeanu, Luis Guasch Pereira, Lucía De la Rosa, Stefania Marzario, Alice Pieri, Alisdair R. Fernie, Saleh Alseekh, Karolina Susek, Douglas R. Cook, Rajeev K. Varshney, Shiv Kumar Agrawal, Aladdin Hamwieh, Elena Bitocchi, Roberto Papa
Publié dans: Current Protocols, 2022, ISSN 2691-1299
Éditeur: John Wiley & Sons
DOI: 10.1002/cpz1.371

Revival of traditional agricultural systems – A multidisciplinary on‐farm survey of maize‐bean intercropping reveals unexpected competition effects on beans

Auteurs: Noa Vazeux‐Blumental, Laura Mathieu, Théo Trabac, Carine Palaffre, Bernard Lagardère, Maryse Carraretto, Cyril Bauland, Martine Le Guilloux, Christine Paysant Le Roux, José Caïus, Anne Marmagne, Jérôme Enjalbert, Timothée Flutre, Edith Le Cadre, Virginie Parnaudeau, Daniel Muller, Yvan Moënne‐Loccoz, Domenica Manicacci, Maud I. Tenaillon
Publié dans: PLANTS, PEOPLE, PLANET, Numéro 7, 2025, Page(s) 1755-1770, ISSN 2572-2611
Éditeur: Wiley
DOI: 10.1002/ppp3.70049

Farming system shapes rhizosphere microbiota and root gene expression in common bean

Auteurs: Marta Suarez-Fernandez, Carmen García-Fernández, Juan José Ferreira, Ana Campa
Publié dans: Frontiers in Plant Science, Numéro 17, 2026, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2026.1749874

Recent Advances in Molecular Tools and Pre-Breeding Activities in White Lupin (Lupinus albus)

Auteurs: Andrea Tosoroni, Valerio Di Vittori, Laura Nanni, Evan Musari, Simone Papalini, Elena Bitocchi, Elisa Bellucci, Alice Pieri, Sofia Ghitarrini, Karolina Susek, Roberto Papa
Publié dans: Plants, Numéro 14, 2025, Page(s) 914, ISSN 2223-7747
Éditeur: MDPI AG
DOI: 10.3390/plants14060914

Expanding our coverage: Strategies to detect a greater range of metabolites

Auteurs: Saleh Alseekh and Alisdair R. Fernie
Publié dans: Current Opinion in Plant Biology, 2023, ISSN 1369-5266
Éditeur: Elsevier BV
DOI: 10.1016/j.pbi.2022.102335

Towards Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Lupins

Auteurs: Magdalena Kroc, Magdalena Tomaszewska, Katarzyna Czepiel, Elena Bitocchi, Markus Oppermann, Kerstin Neumann, Luis Guasch, Elisa Bellucci, Saleh Alseekh, Andreas Graner, Alisdair R. Fernie, Roberto Papa, Karolina Susek
Publié dans: Current Protocols, 2021, ISSN 2691-1299
Éditeur: John Wiley & Sons
DOI: 10.1002/cpz1.191

Application of non-destructive MARVIN and NIR seed screening of pre-breeding material: A case study on common bean ( <i>Phaseolus vulgaris</i> ), white lupin ( <i>Lupinus albus</i> ) and Andean lupin ( <i>L</i> . <i>mutabilis</i> )

Auteurs: Barbara Pipan, Lovro Sinkovič, Mohamed Neji, Vladimir Meglič, Karolina Susek, Magdalena Kroc, Elisa Bellucci, Elena Bitocchi, Roberto Papa
Publié dans: Seed Science and Technology, Numéro 53, 2025, Page(s) 51-72, ISSN 0251-0952
Éditeur: International Seed Testing Association
DOI: 10.15258/sst.2025.53.1.06

Establishment and phenotypic characterization of genetically diverse core collections of Lupinus albus

Auteurs: Umesh Kumar Tanwar, Magdalena Tomaszewska, Katarzyna Czepiel, Mohamed Neji, Humaira Jamil, Lorenzo Rocchetti, Alice Pieri, Elena Bitocchi, Elisa Bellucci, Barbara Pipan, Vladimir Meglič, Markus Oppermann, Magdalena Kroc, Roberto Papa, Karolina Susek
Publié dans: BMC Plant Biology, Numéro 25, 2025, ISSN 1471-2229
Éditeur: BioMed Central
DOI: 10.1186/s12870-025-07115-3

The INCREASE project: Intelligent Collections of food-legume genetic resources for European agrofood systems

Auteurs: Elisa Bellucci, Orlando Mario Aguilar, Saleh Alseekh, Kirstin Bett, Creola Brezeanu, Douglas Cook, Lucía De la Rosa, Massimo Delledonne, Denise F. Dostatny, Juan J Ferreira, Valérie Geffroy, Sofia Ghitarrini, Magdalena Kroc, Shiv Kumar Agrawal, Giuseppina Logozzo, Mario Marino, Tristan Mary-Huard, Phil McClean, Vladimir Meglič, Tamara Messer, Frédéric Muel, Laura Nanni, Kerstin Neumann, Filip
Publié dans: The Plant Journal, 2021, ISSN 1365-313X
Éditeur: John Wiley & Sons
DOI: 10.1111/tpj.15472

Agroecological genomics and participatory science: optimizing crop mixtures for agricultural diversification

Auteurs: Chiara Santamarina, Laura Mathieu, Elena Bitocchi, Alice Pieri, Elisa Bellucci, Valerio Di Vittori, Karolina Susek, Federico Scossa, Laura Nanni, Roberto Papa
Publié dans: Trends in Plant Science, Numéro 30, 2025, Page(s) 1211-1225, ISSN 1360-1385
Éditeur: Elsevier BV
DOI: 10.1016/j.tplants.2025.04.008

Challenges and Opportunities behind the Use of Herbaria in Paleogenomics Studies

Auteurs: Simone Papalini, Valerio Di Vittori, Alice Pieri, Marina Allegrezza, Giulia Frascarelli, Laura Nanni, Elena Bitocchi, Elisa Bellucci, Tania Gioia, Luis Guasch Pereira, Karolina Susek, Maud Tenaillon, Kerstin Neumann, Roberto Papa
Publié dans: Plants, Numéro 12, 2023, Page(s) 3452, ISSN 2223-7747
Éditeur: MDPI AG
DOI: 10.3390/plants12193452

CRISPR/Cas9-Mediated Enrichment Coupled to Nanopore Sequencing Provides a Valuable Tool for the Precise Reconstruction of Large Genomic Target Regions

Auteurs: Giulia Lopatriello, Simone Maestri, Massimiliano Alfano, Roberto Papa, Valerio Di Vittori, Luca De Antoni, Elisa Bellucci, Alice Pieri, Elena Bitocchi, Massimo Delledonne, Marzia Rossato
Publié dans: International Journal of Molecular Sciences, 2023, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms24021076

Genomic insights into genetic diversity and seed coat color change in common bean composite populations

Auteurs: Eva Plestenjak, Mohamed Neji, Lovro Sinkovič, Vladimir Meglič, Barbara Pipan
Publié dans: Frontiers in Plant Science, Numéro 15, 2025, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2024.1523745

Uncovering Phenotypic Variation in Common Bean (Phaseolus vulgaris L.): Insights from the INCREASE Project

Auteurs: Hourieh Tavakoli Hasanaklou, Lovro Sinkovič, Roberto Papa, Elena Bitocchi, Elisa Bellucci, Peter Dolničar, Barbara Pipan
Publié dans: Plants, Numéro 15, 2026, Page(s) 1249, ISSN 2223-7747
Éditeur: MDPI AG
DOI: 10.3390/plants15081249

First Report of <i>Colletotrichum incanum</i> Causing Leaf Spots on Common Bean in Europe (Slovenia)

Auteurs: H.-J. Schroers, J. Zajc, B. Pipan, V. Meglič, E. Kovačec, M. Žerjav
Publié dans: Plant Disease, Numéro 108, 2024, Page(s) 2231, ISSN 0191-2917
Éditeur: American Phytopathological Society
DOI: 10.1094/pdis-02-24-0490-pdn

CRISPR-Cas9-based repeat depletion for the high-throughput genotyping of complex plant genomes

Auteurs: Marzia Rossato, Luca Marcolungo, Luca De Antoni, Giulia Lopatriello, Elisa Bellucci, Gaia Cortinovis, Giulia Frascarelli, Laura Nanni, Elena Biotcchi, Valerio Di Vittori, Leonardo Vincenzi, Filippo Lucchini, Kirstin E Bett, Larissa Remsay, David Konkin, Massimo Delledonne and Roberto Papa
Publié dans: Genome Research, 2023, ISSN 1940-3402
Éditeur: Cold Spring Harbor
DOI: 10.1101/gr.277628.122

Transcriptomic and metabolomic analysis reveals that symbiotic nitrogen fixation enhances drought resistance in common bean

Auteurs: Cristina M. López, Saleh Alseekh, Fernando Torralbo, Félix J. Martínez Rivas, Alisdair R. Fernie, Francisco Amil-Ruiz, Josefa M. Alamillo
Publié dans: Journal of Experimental Botany, 2023, ISSN 1465-3915
Éditeur: Oxford University Press
DOI: 10.1093/jxb/erad083

Nodulation competitiveness and diversification of symbiosis genes in common beans from the American centers of domestication

Auteurs: O. Mario Aguilar, Mónica M. Collavino & Ulises Mancini
Publié dans: Scientific Reports, 2022, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-022-08720-0

Towards the Development, Maintenance, and Standardized Phenotypic Characterization of Single-Seed-Descent Genetic Resources for Common Bean

Auteurs: Gaia Cortinovis, Markus Oppermann, Kerstin Neumann, Andreas Graner, Tania Gioia, Marco Marsella, Saleh Alseekh, Alisdair R. Fernie, Roberto Papa, Elisa Bellucci, Elena Bitocchi
Publié dans: Current Protocols, 2021, ISSN 2691-1299
Éditeur: John Wiley & Sons
DOI: 10.1002/cpz1.133

The I gene defines a dynamic NLR cluster conferring broad potyvirus resistance in common bean

Auteurs: Juan C. Alvarez-Díaz, Alvaro Soler-Garzón, Gianluca Teano, Marion Verdenaud, Alexandre Roudaut, Christophe Klopp, Maria-Victoria Préjean, Stéphanie Pflieger, Timothy G. Porch, Cécile Desbiez, David Latrasse, Moussa Benhamed, Etienne Delannoy, Andrea Pedrosa-Harand, Ariane Gratias, Phillip N. Miklas, Valérie Geffroy
Publié dans: Nature Communications, 2026, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-026-73550-x

Nutritional value and environmental footprint of muffins made with green-lentil flour

Auteurs: Rafaela Geraldo, Carla S. Santos, David Styles, Sérgio Sousa, Elisabete Pinto, Delminda Neves, Marta W. Vasconcelos
Publié dans: Journal of Cleaner Production, Numéro 477, 2024, Page(s) 143826, ISSN 0959-6526
Éditeur: Elsevier BV
DOI: 10.1016/j.jclepro.2024.143826

Screening for resistance to four fungal diseases and associated genomic regions in a snap bean diversity panel

Auteurs: Ana Campa, Valérie Geffroy, Elena Bitocchi, Alicia Noly, Roberto Papa, Juan José Ferreira
Publié dans: Frontiers in Plant Science, Numéro 15, 2024, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2024.1386877

<scp>GWAS</scp> identifies regulators of seed and leaf morphology in common bean, revealing <scp>OFP5</scp> as a major seed size determinant

Auteurs: Julia von Steimker, Mustafa Bulut, Gregory Pozhvanov, Susan Bergmann, Regina Wendenburg, Yuming Sun, Feng Zhu, Alice Pieri, Giulia Frascarelli, Laura Nanni, Elisa Bellucci, Elena Bitocchi, Roberto Papa, Alisdair R. Fernie, Saleh Alseekh
Publié dans: The Plant Journal, Numéro 126, 2026, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/tpj.70909

metaGE: Investigating genotype x environment interactions through GWAS meta-analysis

Auteurs: Annaïg De Walsche, Alexis Vergne, Renaud Rincent, Fabrice Roux, Stéphane Nicolas, Claude Welcker, Sofiane Mezmouk, Alain Charcosset, Tristan Mary-Huard
Publié dans: PLOS Genetics, Numéro 21, 2025, Page(s) e1011553, ISSN 1553-7404
Éditeur: Public Library of Science (PLoS)
DOI: 10.1371/journal.pgen.1011553

Shift in beneficial interactions during crop evolution

Auteurs: Hélène Fréville, Germain Montazeaud, Emma Forst, Jacques David, Roberto Papa, Maud I. Tenaillon
Publié dans: Evolutionary Applications, 2022, ISSN 2691-1299
Éditeur: John Wiley & Sons
DOI: 10.1111/eva.13390

Clustered regularly interspaced short palindromic repeats-CRISPR-associated protein and hairy roots a perfect match for gene functional analysis and crop improvement

Auteurs: Josefa M. Alamillo, Cristina M. López, Félix J. Martínez Rivas, Fernando Torralbo, Mustafa Bulut, Saleh Alseekh
Publié dans: Current Opinion in Biotechnology, 2023, ISSN 1879-0429
Éditeur: Elsevier
DOI: 10.1016/j.copbio.2022.102876

Legume byproducts as ingredients for food applications: Preparation, nutrition, bioactivity, and techno-functional properties

Auteurs: Ancuta Nartea, Anastasiya Kuhalskaya, Benedetta Fanesi, Oghenetega Lois Orhotohwo, Karolina Susek, Lorenzo Rocchetti, Valerio Di Vittori, Elena Bitocchi, Deborah Pacetti, Roberto Papa
Publié dans: Comprehensive Reviews in Food Science and Food Safety, 2023, ISSN 2691-1299
Éditeur: John Wiley & Sons
DOI: 10.1111/1541-4337.13137

Engaging Precision Phenotyping to Scrutinize Vegetative Drought Tolerance and Recovery in Chickpea Plant Genetic Resources

Auteurs: Madita Lauterberg, Henning Tschiersch, Roberto Papa, Elena Bitocchi, Kerstin Neumann
Publié dans: Plants, Numéro 12, 2023, Page(s) 2866, ISSN 2223-7747
Éditeur: MDPI AG
DOI: 10.3390/plants12152866

Genetic erosion within the Fabada dry bean market class revealed by high‐throughput genotyping

Auteurs: Maria Jurado, Carmen García‐Fernández, Ana Campa, Juan Jose Ferreira
Publié dans: The Plant Genome, Numéro 16, 2024, ISSN 1940-3372
Éditeur: Crop Science Society of America
DOI: 10.1002/tpg2.20379

The evolutionary history of the common bean (Phaseolus vulgaris) revealed by chloroplast and nuclear genomes analysis

Auteurs: Giulia Frascarelli, Teresa R. Galise, Nunzio D’Agostino, Donata Cafasso, Salvatore Cozzolino, Gaia Cortinovis, Francesca Sparvoli, Elisa Bellucci, Valerio Di Vittori, Laura Nanni, Alice Pieri, Marzia Rossato, Leonardo Vincenzi, Andrea Benazzo, Massimo Delledonne, Elena Bitocchi, Roberto Papa
Publié dans: Theoretical and Applied Genetics, Numéro 138, 2025, ISSN 0040-5752
Éditeur: Springer Verlag
DOI: 10.1007/s00122-025-04832-z

A comprehensive metabolomics and lipidomics atlas for the legumes common bean, chickpea, lentil and lupin

Auteurs: Mustafa Bulut, Regina Wendenburg, Elena Bitocchi, Elisa Bellucci, Magdalena Kroc, Tania Gioia, Karolina Susek, Roberto Papa, Alisdair R. Fernie, Saleh Alseekh
Publié dans: The Plant Journal, Numéro 116, 2023, Page(s) 1152-1171, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/tpj.16329

Adaptive gene loss in the common bean pan-genome during range expansion and domestication

Auteurs: Gaia Cortinovis, Leonardo Vincenzi, Robyn Anderson, Giovanni Marturano, Jacob Ian Marsh, Philipp Emanuel Bayer, Lorenzo Rocchetti, Giulia Frascarelli, Giovanna Lanzavecchia, Alice Pieri, Andrea Benazzo, Elisa Bellucci, Valerio Di Vittori, Laura Nanni, Juan José Ferreira Fernández, Marzia Rossato, Orlando Mario Aguilar, Peter Laurent Morrell, Monica Rodriguez, Tania Gioia, Kerstin Neumann, Juan C
Publié dans: Nature Communications, Numéro 15, 2024, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-024-51032-2

The milpa, from Mesoamerica to present days, a multicropping traditional agricultural system serving agroecology

Auteurs: Noa Vazeux-Blumental, Domenica Manicacci, Maud Tenaillon
Publié dans: Comptes Rendus. Biologies, Numéro 347, 2024, Page(s) 159-173, ISSN 1768-3238
Éditeur: Académie des sciences
DOI: 10.5802/crbiol.164

Implementation of theoretical non-photochemical quenching (NPQ(T)) to investigate NPQ of chickpea under drought stress with High-throughput Phenotyping

Auteurs: Madita Lauterberg, Henning Tschiersch, Yusheng Zhao, Markus Kuhlmann, Ingo Mücke, Roberto Papa, Elena Bitocchi, Kerstin Neumann
Publié dans: Scientific Reports, Numéro 14, 2024, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-024-63372-6

The unexplored diversity of rough-seeded lupins provides rich genomic resources and insights into lupin evolution

Auteurs: Karolina Susek, Leonardo Vincenzi, Magdalena Tomaszewska, Magdalena Kroc, Edoardo Franco, Emanuela Cosentino, Antonina Rita Limongi, Umesh Kumar Tanwar, Humaira Jamil, Matthew Nicholas Nelson, Philipp E. Bayer, David Edwards, Roberto Papa, Massimo Delledonne, Scott A. Jackson
Publié dans: Nature Communications, Numéro 16, 2025, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-025-58531-w

Selection and adaptive introgression guided the complex evolutionary history of the European common bean

Auteurs: Lorenzo Rocchetti, Tania Gioia, Giuseppina Logozzo, Creola Brezeanu, Luis Guasch Pereira, Lucía De la Rosa, Stefania Marzario, Alice Pieri, Alisdair R. Fernie, Saleh Alseekh, Karolina Susek, Douglas R. Cook, Rajeev K. Varshney, Shiv Kumar Agrawal, Aladdin Hamwieh, Elena Bitocchi, Roberto Papa
Publié dans: Current Protocols, 2022, ISSN 2691-1299
Éditeur: John Wiley & Sons
DOI: 10.1038/s41467-023-37332-z

Oat and lentil-based muffins as a functional food: Enhanced glycaemia control, anti-inflammatory effects, and intestinal epithelium integrity

Auteurs: Rafaela Geraldo, Manuela Machado, Sara Silva, Simão Pinho, Alexandra Gouveia, Delminda Neves, Elisabete Pinto, Manuela Pintado, Marta W. Vasconcelos
Publié dans: Journal of Functional Foods, Numéro 135, 2026, Page(s) 107101, ISSN 1756-4646
Éditeur: Elsevier BV
DOI: 10.1016/j.jff.2025.107101