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MIXed plastics biodegradation and UPcycling using microbial communities

Deliverables

Initial Data Management Plan

Related to task 8.2: Initial Data Management Plan

Online blog as platform for consistent public dissemination

Related to task 8.1: An online blog as platform for consistent public dissemination. After setting up the blog, frequent posts (English, minimum four per month) will report about the project’s progress and news from the global plastic crisis to set the consortium’s work in a comprehensive context. The blog will be linked to the social media channels of the consortium members to maximize the communication and impact (PGS).

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Publications

Synthetic Biology and Genome-Editing Tools for Improving PHA Metabolic Engineering

Author(s): Xu Zhang, Yina Lin, Qiong Wu, Ying Wang, Guo-Qiang Chen
Published in: Trends in Biotechnology, Issue 38/7, 2020, Page(s) 689-700, ISSN 0167-7799
DOI: 10.1016/j.tibtech.2019.10.006

High-Efficiency Multi-site Genomic Editing of Pseudomonas putida through Thermoinducible ssDNA Recombineering

Author(s): Tomas Aparicio, Akos Nyerges, Esteban Martínez-García, Víctor de Lorenzo
Published in: iScience, Issue 23/3, 2020, Page(s) 100946, ISSN 2589-0042
DOI: 10.1016/j.isci.2020.100946

Biosynthesis of functional polyhydroxyalkanoates by engineered Halomonas bluephagenesis

Author(s): Lin-Ping Yu, Xu Yan, Xu Zhang, Xiang-Bin Chen, Qiong Wu, Xiao-Ran Jiang, Guo-Qiang Chen
Published in: Metabolic Engineering, Issue 59, 2020, Page(s) 119-130, ISSN 1096-7176
DOI: 10.1016/j.ymben.2020.02.005

Polyhydroxyalkanoates (PHA) toward cost competitiveness and functionality

Author(s): Guo-Qiang Chen, Xin-Yu Chen, Fu-Qing Wu, Jin-Chun Chen
Published in: Advanced Industrial and Engineering Polymer Research, Issue 3/1, 2020, Page(s) 1-7, ISSN 2542-5048
DOI: 10.1016/j.aiepr.2019.11.001

Engineering Halomonas bluephagenesis for L-Threonine production

Author(s): Hetong Du, Yiqing Zhao, Fuqing Wu, Peifei Ouyang, Jinchun Chen, Xiaoran Jiang, Jianwen Ye, Guo-Qiang Chen
Published in: Metabolic Engineering, Issue 60, 2020, Page(s) 119-127, ISSN 1096-7176
DOI: 10.1016/j.ymben.2020.04.004

For the sake of the Bioeconomy: define what a Synthetic Biology Chassis is!

Author(s): Víctor de Lorenzo, Natalio Krasnogor, Markus Schmidt
Published in: New Biotechnology, Issue 60, 2021, Page(s) 44-51, ISSN 1871-6784
DOI: 10.1016/j.nbt.2020.08.004

ArsH protects Pseudomonas putida from oxidative damage caused by exposure to arsenic

Author(s): A. David Páez‐Espino, Pablo I. Nikel, Max Chavarría, Víctor Lorenzo
Published in: Environmental Microbiology, Issue 22/6, 2020, Page(s) 2230-2242, ISSN 1462-2912
DOI: 10.1111/1462-2920.14991

Novel Magnetic Carbon Supported Molybdenum Disulfide Catalyst and Its Application in Residue Upgrading

Author(s): Xiangyang Zhu, Dong Qiao, Liangrong Yang, Qinling Bi, Huifang Xing, Shan Ni, Menglei Yuan, Huizhou Liu, Luhai Wang, An Ma
Published in: Green Energy & Environment, 2020, ISSN 2468-0257
DOI: 10.1016/j.gee.2020.06.025

Concomitant prediction of environmental fate and toxicity of chemical compounds

Author(s): Juan Antonio Garcia-Martin, Max Chavarría, Victor de Lorenzo, Florencio Pazos
Published in: Biology Methods and Protocols, Issue 5/1, 2020, ISSN 2396-8923
DOI: 10.1093/biomethods/bpaa025

Surface Display of Designer Protein Scaffolds on Genome-Reduced Strains of Pseudomonas putida

Author(s): Pavel Dvořák, Edward A. Bayer, Víctor de Lorenzo
Published in: ACS Synthetic Biology, Issue 9/10, 2020, Page(s) 2749-2764, ISSN 2161-5063
DOI: 10.1021/acssynbio.0c00276

Fabrication of hypercrosslinked hydroxyl-rich solid phase extractants for cesium separation from the salt lake brine

Author(s): Zihao Xu, Meng Rong, Qiyu Meng, Haoyu Yao, Shan Ni, Li Wang, Huifang Xing, Hongnan Qu, Liangrong Yang, Huizhou Liu
Published in: Chemical Engineering Journal, Issue 400, 2020, Page(s) 125991, ISSN 1385-8947
DOI: 10.1016/j.cej.2020.125991

Possibilities and limitations of biotechnological plastic degradation and recycling

Author(s): Ren Wei, Till Tiso, Jürgen Bertling, Kevin O’Connor, Lars M. Blank, Uwe T. Bornscheuer
Published in: Nature Catalysis, Issue Monthly journal, 2020, ISSN 2520-1158
DOI: 10.1038/s41929-020-00521-w

Efficient recovery of bio-based 1,2,4-butanetriol by using boronic acid anionic reactive extraction

Author(s): Qiyu Meng, Jiemiao Yu, Liangrong Yang, Yanqing Li, Mo Xian, Huizhou Liu
Published in: Separation and Purification Technology, Issue 255, 2021, Page(s) 117728, ISSN 1383-5866
DOI: 10.1016/j.seppur.2020.117728

Enhanced resistance of Trichoderma harzianum LZDX-32-08 to hygromycin B induced by sea salt

Author(s): Xijia Yu, Huiling Wei, Xianrui Liu, Dong Liu, Aili Fan, Haijia Su
Published in: Biotechnology Letters, Issue 43/1, 2021, Page(s) 213-222, ISSN 0141-5492
DOI: 10.1007/s10529-020-02994-y

Hyphenation of supercritical fluid chromatography with different detection methods for identification and quantification of liamocin biosurfactants

Author(s): Karen Scholz, Anna Lipphardt, Carina M. Wienken, Till Tiso, Heiko Hayen
Published in: Journal of Chromatography A, Issue 1631, 2020, Page(s) 461584, ISSN 0021-9673
DOI: 10.1016/j.chroma.2020.461584

Quantitative assessment of morphological traits of planktonic bacterial aggregates

Author(s): David R. Espeso, Esteban Martínez-García, Víctor de Lorenzo
Published in: Water Research, Issue 188, 2021, Page(s) 116468, ISSN 0043-1354
DOI: 10.1016/j.watres.2020.116468

Recent advances in biocatalysts engineering for polyethylene terephthalate plastic waste green recycling

Author(s): Nadia A. Samak, Yunpu Jia, Moustafa M. Sharshar, Tingzhen Mu, Maohua Yang, Sumit Peh, Jianmin Xing
Published in: Environment International, Issue 145, 2020, Page(s) 106144, ISSN 0160-4120
DOI: 10.1016/j.envint.2020.106144

A SsrA/NIa-based Strategy for Post-Translational Regulation of Protein Levels in Gram-negative Bacteria

Author(s): Gonzalo Durante-Rodríguez, Belén Calles, Víctor Lorenzo, Pablo Nikel
Published in: BIO-PROTOCOL, Issue 10/14, 2020, ISSN 2331-8325
DOI: 10.21769/bioprotoc.3688

Rational flux-tuning of Halomonas bluephagenesis for co-production of bioplastic PHB and ectoine

Author(s): Hong Ma, Yiqing Zhao, Wuzhe Huang, Lizhan Zhang, Fuqing Wu, Jianwen Ye, Guo-Qiang Chen
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
DOI: 10.1038/s41467-020-17223-3

Applications of phage-derived RNA-based technologies in synthetic biology

Author(s): Wenhui Zhang, Qiong Wu
Published in: Synthetic and Systems Biotechnology, Issue 5/4, 2020, Page(s) 343-360, ISSN 2405-805X
DOI: 10.1016/j.synbio.2020.09.003

Defined Microbial Mixed Culture for Utilization of Polyurethane Monomers

Author(s): Romualdus Nugraha Catur Utomo, Wing-Jin Li, Till Tiso, Christian Eberlein, Moritz Doeker, Hermann J. Heipieper, Andreas Jupke, Nick Wierckx, Lars M. Blank
Published in: ACS Sustainable Chemistry & Engineering, Issue 8/47, 2020, Page(s) 17466-17474, ISSN 2168-0485
DOI: 10.1021/acssuschemeng.0c06019

Naked Bacterium: Emerging Properties of a Surfome-Streamlined Pseudomonas putida Strain

Author(s): Esteban Martínez-García, Sofía Fraile, David Rodríguez Espeso, Davide Vecchietti, Giovanni Bertoni, Víctor de Lorenzo
Published in: ACS Synthetic Biology, Issue 9/9, 2020, Page(s) 2477-2492, ISSN 2161-5063
DOI: 10.1021/acssynbio.0c00272

An automated DIY framework for experimental evolution of Pseudomonas putida

Author(s): David R. Espeso, Pavel Dvořák, Tomás Aparicio, Víctor Lorenzo
Published in: Microbial Biotechnology, 2020, Page(s) 1-7, ISSN 1751-7915
DOI: 10.1111/1751-7915.13678

Unraveling 1,4-Butanediol Metabolism in Pseudomonas putida KT2440

Author(s): Wing-Jin Li, Tanja Narancic, Shane T. Kenny, Paul-Joachim Niehoff, Kevin O’Connor, Lars M. Blank, Nick Wierckx
Published in: Frontiers in Microbiology, Issue 11, 2020, ISSN 1664-302X
DOI: 10.3389/fmicb.2020.00382

Recent Advances in Bioplastics: Application and Biodegradation

Author(s): Tanja Narancic, Federico Cerrone, Niall Beagan, Kevin E. O’Connor
Published in: Polymers, Issue 12/4, 2020, Page(s) 920, ISSN 2073-4360
DOI: 10.3390/polym12040920

Biodegradation of low-density polyethylene by Microbulbifer hydrolyticus IRE-31

Author(s): Zhongyu Li, Ren Wei, Meixi Gao, Yanru Ren, Bo Yu, Kaili Nie, Haijun Xu, Luo Liu
Published in: Journal of Environmental Management, Issue 263, 2020, Page(s) 110402, ISSN 0301-4797
DOI: 10.1016/j.jenvman.2020.110402

Thermophilic whole‐cell degradation of polyethylene terephthalate using engineered Clostridium thermocellum

Author(s): Fei Yan, Ren Wei, Qiu Cui, Uwe T. Bornscheuer, Ya‐Jun Liu
Published in: Microbial Biotechnology, 2020, ISSN 1751-7915
DOI: 10.1111/1751-7915.13580

Anti-staphylococcal hydrogels based on bacterial cellulose and the antimicrobial biopolyester poly(3-hydroxy-acetylthioalkanoate-co-3-hydroxyalkanoate)

Author(s): Virginia Rivero-Buceta, María Rosa Aguilar, Ana María Hernández-Arriaga, Francisco G. Blanco, Antonia Rojas, Marta Tortajada, Rosa Ana Ramírez-Jiménez, Blanca Vázquez-Lasa, Auxiliadora Prieto
Published in: International Journal of Biological Macromolecules, 2020, ISSN 0141-8130
DOI: 10.1016/j.ijbiomac.2020.07.289

A Combined Bio-Chemical Synthesis Route for 1-Octene Sheds Light on Rhamnolipid Structure

Author(s): Till Tiso, Daniel F. Sauer, Klaus Beckerle, Christian C. Blesken, Jun Okuda, Lars M. Blank
Published in: Catalysts, Issue 10/8, 2020, Page(s) 874, ISSN 2073-4344
DOI: 10.3390/catal10080874

The Wsp intermembrane complex mediates metabolic control of the swim‐attach decision of Pseudomonas putida

Author(s): Ángeles Hueso‐Gil, Belén Calles, Víctor Lorenzo
Published in: Environmental Microbiology, Issue 22/8, 2020, Page(s) 3535-3547, ISSN 1462-2912
DOI: 10.1111/1462-2920.15126

Recombinant protein production in the filamentous fungus Trichoderma

Author(s): Huiling Wei, Mengyue Wu, Aili Fan, Haijia Su
Published in: Chinese Journal of Chemical Engineering, 2020, ISSN 1004-9541
DOI: 10.1016/j.cjche.2020.11.006

Seawater activated TiO2 photocatalyst for degradation of organic compounds

Author(s): Max-Fabian Volhard, Jonas Johannes Christ, Lars Mathias Blank, Thomas Jüstel
Published in: Sustainable Chemistry and Pharmacy, Issue 16, 2020, Page(s) 100251, ISSN 2352-5541
DOI: 10.1016/j.scp.2020.100251

Großartige Winzlinge - Mikroben sind die heimlichen Herrscher der Welt. Und wir können sie für vieles nutzen.

Author(s): Magdalena Hamm, Susan Schädlich, Anja Garms, Michael Stang
Published in: Das Magazin für neugierige Forscher, Issue "#1, April 2020", 2020, Page(s) 2-5

Waste to plastics by enzymes and bacteria - From plastic waste to PHA using enzymes and the bacterium P. putida

Author(s): MT
Published in: bioplastics MAGAZINE, Issue 02/20 Vol. 15, 2020, Page(s) 22-24