MIXed plastics biodegradation and UPcycling using microbial communities

Livrables

Related to task 82Final Data Management Plan

Related to task 8.2: Initial Data Management Plan

Online blog as platform for consistent public dissemination

Related to task 8.1: An online blog as platform for consistent public dissemination. After setting up the blog, frequent posts (English, minimum four per month) will report about the project’s progress and news from the global plastic crisis to set the consortium’s work in a comprehensive context. The blog will be linked to the social media channels of the consortium members to maximize the communication and impact (PGS).

Update SEVA collection

Related to task 7.7:Update SEVA collection with at least three new platforms for genome editing and site-specific sequence diversification of chromosomal segments (CSIC).

Publications

Synthetic Biology and Genome-Editing Tools for Improving PHA Metabolic Engineering

Auteurs: Xu Zhang, Yina Lin, Qiong Wu, Ying Wang, Guo-Qiang Chen
Publié dans: Trends in Biotechnology, Numéro 38/7, 2020, Page(s) 689-700, ISSN 0167-7799
Éditeur: Elsevier BV
DOI: 10.1016/j.tibtech.2019.10.006

Biodegradation of polyester polyurethane by Cladosporium sp. P7: Evaluating its degradation capacity and metabolic pathways

Auteurs: Jiawei Liu, Qingyi Zeng, Huirui Lei, Kaiyuan Xin, Anming Xu, Ren Wei, Ding Li, Jie Zhou, Weiliang Dong, Min Jiang.
Publié dans: Journal of Hazardous Materials, 2023, ISSN 1873-3336
Éditeur: Elsevier
DOI: 10.1016/j.jhazmat.2023.130776

Enzymatic degradation of polyethylene terephthalate nanoplastics analyzed in real time by isothermal titration calorimetry

Auteurs: Kristina Vogel, Ren Wei, Lara Pfaff, Daniel Breite, Hassan Al-Fathi, Christian Ortmann, Irina Estrela-Lopis, Tom Venus, Agnes Schulze, Hauke Harms, Uwe T. Bornscheuer, Thomas Maskow
Publié dans: Science of The Total Environment, Numéro 773, 2021, Page(s) 145111, ISSN 0048-9697
Éditeur: Elsevier BV
DOI: 10.1016/j.scitotenv.2021.145111

Anti-staphylococcal hydrogels based on bacterial cellulose and the antimicrobial biopolyester poly(3-hydroxy-acetylthioalkanoate-co-3-hydroxyalkanoate)

Auteurs: Virginia Rivero-Buceta, María Rosa Aguilar, Ana María Hernández-Arriaga, Francisco G. Blanco, Antonia Rojas, Marta Tortajada, Rosa Ana Ramírez-Jiménez, Blanca Vázquez-Lasa, Auxiliadora Prieto
Publié dans: International Journal of Biological Macromolecules, Numéro 162, 2020, Page(s) 1869-1879, ISSN 0141-8130
Éditeur: Elsevier BV
DOI: 10.1016/j.ijbiomac.2020.07.289

Water potential governs the effector specificity of the transcriptional regulator XylR of Pseudomonas putida

Auteurs: Pavel Dvořák, Teca Calcagno Galvão, Katharina Pflüger-Grau, Alice M Banks, Víctor de Lorenzo, Jose I Jiménez
Publié dans: Environmental Microbiology, 2023, ISSN 1462-2920
Éditeur: Wiley
DOI: 10.1111/1462-2920.16342

Chemical and biological catalysis for plastics recycling and upcycling

Auteurs: Lucas D. Ellis, Nicholas A. Rorrer, Kevin P. Sullivan, Maike Otto, John E. McGeehan, Yuriy Román-Leshkov, Nick Wierckx, Gregg T. Beckham
Publié dans: Nature Catalysis, Numéro 4/7, 2021, Page(s) 539-556, ISSN 2520-1158
Éditeur: Springer Nature
DOI: 10.1038/s41929-021-00648-4

MIXed plastics biodegradation and UPcycling using microbial communities: EU Horizon 2020 project MIX-UP started January 2020

Auteurs: Hendrik Ballerstedt, Till Tiso, Nick Wierckx, Ren Wei, Luc Averous, Uwe Bornscheuer, Kevin O’Connor, Tilman Floehr, Andreas Jupke, Jürgen Klankermayer, Luo Liu, Victor de Lorenzo, Tanja Narancic, Juan Nogales, Rémi Perrin, Eric Pollet, Auxiliadora Prieto, William Casey, Thomas Haarmann, Alexandru Sarbu, Ulrich Schwaneberg, Fengxue Xin, Weiliang Dong, Jiamin Xing, Guo-Qiang Chen, Tianwei Tan, M
Publié dans: Environmental Sciences Europe, Numéro 33/1, 2021, Page(s) 99, ISSN 2190-4707
Éditeur: Springer Verlag
DOI: 10.1186/s12302-021-00536-5

High-Efficiency Multi-site Genomic Editing of Pseudomonas putida through Thermoinducible ssDNA Recombineering

Auteurs: Tomas Aparicio, Akos Nyerges, Esteban Martínez-García, Víctor de Lorenzo
Publié dans: iScience, Numéro 23/3, 2020, Page(s) 100946, ISSN 2589-0042
Éditeur: Elsevier
DOI: 10.1016/j.isci.2020.100946

Structural Insights into (Tere)phthalate-Ester Hydrolysis by a Carboxylesterase and Its Role in Promoting PET Depolymerization

Auteurs: Gerlis von Haugwitz, Xu Han, Lara Pfaff, Qian Li, Hongli Wei, Jian Gao, Karen Methling, Yufei Ao, Yannik Brack, Jan Mican, Christian G. Feiler, Manfred S. Weiss, David Bednar, Gottfried J. Palm, Michael Lalk, Michael Lammers, Jiri Damborsky, Gert Weber, Weidong Liu, Uwe T. Bornscheuer, Ren Wei
Publié dans: ACS Catalysis, 2022, ISSN 2155-5435
Éditeur: American Chemical Society
DOI: 10.1021/acscatal.2c03772

Biosynthesis of functional polyhydroxyalkanoates by engineered Halomonas bluephagenesis

Auteurs: Lin-Ping Yu, Xu Yan, Xu Zhang, Xiang-Bin Chen, Qiong Wu, Xiao-Ran Jiang, Guo-Qiang Chen
Publié dans: Metabolic Engineering, Numéro 59, 2020, Page(s) 119-130, ISSN 1096-7176
Éditeur: Academic Press
DOI: 10.1016/j.ymben.2020.02.005

Polyhydroxyalkanoates (PHA) toward cost competitiveness and functionality

Auteurs: Guo-Qiang Chen, Xin-Yu Chen, Fu-Qing Wu, Jin-Chun Chen
Publié dans: Advanced Industrial and Engineering Polymer Research, Numéro 3/1, 2020, Page(s) 1-7, ISSN 2542-5048
Éditeur: Science Direct
DOI: 10.1016/j.aiepr.2019.11.001

A pseudo-homogeneous system for PET glycolysis using a colloidal catalyst of graphite carbon nitride in ethylene glycol

Auteurs: Zishuai Wang, Yaoqiang Wang, Shengnan Xu, Yu Jin, Zequn Tang, Gang Xiao, Haijia Su
Publié dans: Polymer Degradation and Stability, Numéro 190, 2021, Page(s) 109638, ISSN 0141-3910
Éditeur: Elsevier BV
DOI: 10.1016/j.polymdegradstab.2021.109638

Molecular and Biochemical Differences of the Tandem and Cold-Adapted PET Hydrolases Ple628 and Ple629, Isolated From a Marine Microbial Consortium

Auteurs: Ingrid E. Meyer Cifuentes, Pan Wu, Yipei Zhao, Weidong Liu, Meina Neumann-Schaal, Lara Pfaff, Justyna Barys, Zhishuai Li, Jian Gao, Xu Han, Uwe T. Bornscheuer, Ren Wei, Basak Öztürk
Publié dans: Frontiers in Bioengineering and Biotechnology, 2022, ISSN 2296-4185
Éditeur: Frontiers Media S.A
DOI: 10.3389/fbioe.2022.930140

Engineering Halomonas bluephagenesis for L-Threonine production

Auteurs: Hetong Du, Yiqing Zhao, Fuqing Wu, Peifei Ouyang, Jinchun Chen, Xiaoran Jiang, Jianwen Ye, Guo-Qiang Chen
Publié dans: Metabolic Engineering, Numéro 60, 2020, Page(s) 119-127, ISSN 1096-7176
Éditeur: Academic Press
DOI: 10.1016/j.ymben.2020.04.004

The molecular basis and enzyme engineering strategies for improvement of coupling efficiency in cytochrome P450s

Auteurs: Shuaiqi Meng, Yu Ji, LeiLei Zhu, Gaurao V. Dhoke, Mehdi D. Davari, Ulrich Schwaneberg
Publié dans: Biotechnology Advances, 2022, ISSN 0734-9750
Éditeur: Elsevier BV
DOI: 10.1016/j.biotechadv.2022.108051

Uncoupling Foam Fractionation and Foam Adsorption for Enhanced Biosurfactant Synthesis and Recovery.

Auteurs: Christian C. Blesken; Tessa Strümpfler; Till Tiso; Lars M. Blank
Publié dans: Microorganisms, Numéro 2, 2020, ISSN 2078-2489
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.18154/rwth-2021-00396

For the sake of the Bioeconomy: define what a Synthetic Biology Chassis is!

Auteurs: Víctor de Lorenzo, Natalio Krasnogor, Markus Schmidt
Publié dans: New Biotechnology, Numéro 60, 2021, Page(s) 44-51, ISSN 1871-6784
Éditeur: Elsevier BV
DOI: 10.1016/j.nbt.2020.08.004

Synthetic Control of Metabolic States in Pseudomonas putida by Tuning Polyhydroxyalkanoate Cycle

Auteurs: Maria-Tsampika Manoli, Juan Nogales, Auxiliadora Prieto
Publié dans: mBio, Numéro January/February 2022 Volume 13 Numéro 11, 2022, ISSN 2150-7511
Éditeur: American Society for Microbiology
DOI: 10.1128/mbio.01794-21

Sustainable cycloaliphatic polyurethanes from synthesis to applications

Auteurs: Agathe Mouren, Luc Avérous
Publié dans: Chem. Soc. Rev., Numéro Vol. 52, 2023, Page(s) 277-317, ISSN 1460-4744
Éditeur: RSC
DOI: 10.1039/d2cs00509c

CRISPR/Cas9-enhanced targetron insertion for the delivery of heterologous sequences into the genome of Gram-negative bacteria

Auteurs: Elena Velázquez, Yamal Al-Ramahi, Víctor de Lorenzo
Publié dans: Current Protocols, Numéro 2(9), 2022, Page(s) e532, ISSN 2691-1299
Éditeur: Wiley on line Library
DOI: 10.1002/cpz1.532

ArsH protects Pseudomonas putida from oxidative damage caused by exposure to arsenic

Auteurs: A. David Páez‐Espino, Pablo I. Nikel, Max Chavarría, Víctor Lorenzo
Publié dans: Environmental Microbiology, Numéro 22/6, 2020, Page(s) 2230-2242, ISSN 1462-2912
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.14991

Toward merging bottom–up and top–down model-based designing of synthetic microbial communities

Auteurs: David San León, Juan Nogales
Publié dans: Current Opinion in Microbiology, Numéro Volume 69, October 2022, 102169, 2022, Page(s) 102169, ISSN 1369-5274
Éditeur: Elsevier BV
DOI: 10.1016/j.mib.2022.102169

Towards bio-upcycling of polyethylene terephthalate

Auteurs: Till Tiso, Tanja Narancic, Ren Wei, Eric Pollet, Niall Beagan, Katja Schröder, Annett Honak, Mengying Jiang, Shane T. Kenny, Nick Wierckx, Rémi Perrin, Luc Avérous, Wolfgang Zimmermann, Kevin O'Connor, Lars M. Blank
Publié dans: Metabolic Engineering, Numéro 66, 2021, Page(s) 167-178, ISSN 1096-7176
Éditeur: Academic Press
DOI: 10.1016/j.ymben.2021.03.011

An updated structural model of the A domain of the Pseudomonas putida XylR regulator poses an atypical interplay with aromatic effectors

Auteurs: Pavel Dvořák, Carlos Alvarez‐Carreño, Sergio Ciordia, Alberto Paradela, Víctor Lorenzo
Publié dans: Environmental Microbiology, Numéro 23/8, 2021, Page(s) 4418-4433, ISSN 1462-2912
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.15628

Tailor‐Made Polyhydroxyalkanoates by Reconstructing Pseudomonas Entomophila

Auteurs: Mengyi Li, Yueyuan Ma, Xu Zhang, Lizhan Zhang, Xinyu Chen, Jian‐Wen Ye, Guo‐Qiang Chen
Publié dans: Advanced Materials, 2021, Page(s) 2102766, ISSN 0935-9648
Éditeur: United Nations Industrial Developement Organization
DOI: 10.1002/adma.202102766

Mixed plastics biodegradation and UPcycling using microbial communities: the NSFC-EU 2019 project MIX-UP to help achieve “carbon neutrality”

Auteurs: Jie Zhou, Haijia Su, Qiong Wu, Jianmin Xing, Weiliang Dong and Min Jiang
Publié dans: Chinese Journal of Biotechnology, 2021, ISSN 1000-3061
Éditeur: Kexue Chubaneshe/Science Press
DOI: 10.13345/j.cjb.210398

Reconfiguration of metabolic fluxes in Pseudomonas putida as a response to sub-lethal oxidative stress

Auteurs: Pablo I. Nikel, Tobias Fuhrer, Max Chavarría, Alberto Sánchez-Pascuala, Uwe Sauer, Víctor de Lorenzo
Publié dans: The ISME Journal, Numéro 15/6, 2021, Page(s) 1751-1766, ISSN 1751-7362
Éditeur: Nature Publishing Group
DOI: 10.1038/s41396-020-00884-9

Novel Magnetic Carbon Supported Molybdenum Disulfide Catalyst and Its Application in Residue Upgrading

Auteurs: Xiangyang Zhu, Dong Qiao, Liangrong Yang, Qinling Bi, Huifang Xing, Shan Ni, Menglei Yuan, Huizhou Liu, Luhai Wang, An Ma
Publié dans: Green Energy & Environment, 2020, ISSN 2468-0257
Éditeur: ELSEVIER ScienceDirect
DOI: 10.1016/j.gee.2020.06.025

From Residues to Added-Value Bacterial Biopolymers as Nanomaterials for Biomedical Applications

Auteurs: Francisco G. Blanco, Natalia Hernández, Virginia Rivero-Buceta, Beatriz Maestro, Jesús M. Sanz, Aránzazu Mato, Ana M. Hernández-Arriaga, M. Auxiliadora Prieto
Publié dans: Nanomaterials, Numéro 11/6, 2021, Page(s) 1492, ISSN 2079-4991
Éditeur: MDPI
DOI: 10.3390/nano11061492

Editorial: Microbial Degradation of Plastics

Auteurs: Ren Wei, Nick Wierckx
Publié dans: Frontiers in Microbiology, Numéro 12, 2021, ISSN 1664-302X
Éditeur: Frontiers Media
DOI: 10.3389/fmicb.2021.635621

Synthesis of Modified Poly(vinyl Alcohol)s and Their Degradation Using an Enzymatic Cascade

Auteurs: Gerlis von Haugwitz, Kian Donnelly, Mara Di Filippo, Daniel Breite, Max Phippard, Agnes Schulze, Ren Wei, Marcus Baumann, Uwe Bornscheuer
Publié dans: Angew. Chem. Int. Ed., 2023, ISSN 1521-3773
Éditeur: Wiley
DOI: 10.1002/anie.202216962

Concomitant prediction of environmental fate and toxicity of chemical compounds

Auteurs: Juan Antonio Garcia-Martin, Max Chavarría, Victor de Lorenzo, Florencio Pazos
Publié dans: Biology Methods and Protocols, Numéro 5/1, 2020, ISSN 2396-8923
Éditeur: Oxford University Press
DOI: 10.1093/biomethods/bpaa025

Process analysis of microplastic degradation using activated PMS and Fenton reagents

Auteurs: Bin Liu, Qixuan Jiang, Zenghui Qiu, Luo Liu, Ren Wei, Xin Zhang, Haijun Xu
Publié dans: Chemosphere, 2022, ISSN 0045-6535
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.chemosphere.2022.134220

Surface Display of Designer Protein Scaffolds on Genome-Reduced Strains of Pseudomonas putida

Auteurs: Pavel Dvořák, Edward A. Bayer, Víctor de Lorenzo
Publié dans: ACS Synthetic Biology, Numéro 9/10, 2020, Page(s) 2749-2764, ISSN 2161-5063
Éditeur: American Chemical Society
DOI: 10.1021/acssynbio.0c00276

Innovation versus novelty in microbial systems

Auteurs: de Lorenzo, Víctor
Publié dans: Environmental Microbioly, Numéro 25(1), 2023, Page(s) 167-170, ISSN 1462-2920
Éditeur: Wiley
DOI: 10.1111/1462-2920.16278

ssDNA recombineering boosts in vivo evolution of nanobodies displayed on bacterial surfaces.

Auteurs: Yamal Al-ramahi, Akos Nyerges, Yago Margolles, Lidia Cerdán, Gyorgyi Ferenc, Csaba Pál, Luis Ángel Fernández, Víctor de Lorenzo
Publié dans: Communications Biology, Numéro volume 4, Article number: 1169, 2021, ISSN 2399-3642
Éditeur: Nature Research
DOI: 10.1038/s42003-021-02702-0

Fabrication of hypercrosslinked hydroxyl-rich solid phase extractants for cesium separation from the salt lake brine

Auteurs: Zihao Xu, Meng Rong, Qiyu Meng, Haoyu Yao, Shan Ni, Li Wang, Huifang Xing, Hongnan Qu, Liangrong Yang, Huizhou Liu
Publié dans: Chemical Engineering Journal, Numéro 400, 2020, Page(s) 125991, ISSN 1385-8947
Éditeur: Elsevier BV
DOI: 10.1016/j.cej.2020.125991

Possibilities and limitations of biotechnological plastic degradation and recycling

Auteurs: Ren Wei, Till Tiso, Jürgen Bertling, Kevin O’Connor, Lars M. Blank, Uwe T. Bornscheuer
Publié dans: Nature Catalysis, Numéro Monthly journal, 2020, ISSN 2520-1158
Éditeur: Springer Nature
DOI: 10.1038/s41929-020-00521-w

A Standardized Inverter Package Borne by Broad Host Range Plasmids for Genetic Circuit Design in Gram-Negative Bacteria

Auteurs: Huseyin Tas, Ángel Goñi-Moreno, Víctor de Lorenzo
Publié dans: ACS Synthetic Biology, Numéro 10/1, 2021, Page(s) 213-217, ISSN 2161-5063
Éditeur: American Chemical Society
DOI: 10.1021/acssynbio.0c00529

A Combined Bio-Chemical Synthesis Route for 1-Octene Sheds Light on Rhamnolipid Structure

Auteurs: Till Tiso, Daniel F. Sauer, Klaus Beckerle, Christian C. Blesken, Jun Okuda, Lars M. Blank
Publié dans: Catalysts, Numéro 10/8, 2020, Page(s) 874, ISSN 2073-4344
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/catal10080874

Efficient recovery of bio-based 1,2,4-butanetriol by using boronic acid anionic reactive extraction

Auteurs: Qiyu Meng, Jiemiao Yu, Liangrong Yang, Yanqing Li, Mo Xian, Huizhou Liu
Publié dans: Separation and Purification Technology, Numéro 255, 2021, Page(s) 117728, ISSN 1383-5866
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.seppur.2020.117728

Fusion of Chitin-Binding Domain From Chitinolyticbacter meiyuanensis SYBC-H1 to the Leaf-Branch Compost Cutinase for Enhanced PET Hydrolysis

Auteurs: Rui Xue, Yinping Chen, Huan Rong, Ren Wei, Zhongli Cui, Jie Zhou, Weiliang Dong, Min Jiang
Publié dans: Frontiers in Bioengineering and Biotechnology, 2021, ISSN 2296-4185
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fbioe.2021.762854

Standardization of inducer-activated broad host range expression modules: Debugging and refactoring an alkane-responsive AlkS/PalkB device.

Auteurs: Alejandro Arce-Rodríguez, Ilaria Benedetti, José Manuel Borrero-de Acuña, Rafael Silva-Rocha, Víctor de Lorenzo
Publié dans: Synthetic Biology, Numéro Volume 6, Numéro 1, 2021, Page(s) 1–11, ISSN 2397-7000
Éditeur: Oxford University Press
DOI: 10.1093/synbio/ysab030

Enhanced resistance of Trichoderma harzianum LZDX-32-08 to hygromycin B induced by sea salt

Auteurs: Xijia Yu, Huiling Wei, Xianrui Liu, Dong Liu, Aili Fan, Haijia Su
Publié dans: Biotechnology Letters, Numéro 43/1, 2021, Page(s) 213-222, ISSN 0141-5492
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s10529-020-02994-y

Hyphenation of supercritical fluid chromatography with different detection methods for identification and quantification of liamocin biosurfactants

Auteurs: Karen Scholz, Anna Lipphardt, Carina M. Wienken, Till Tiso, Heiko Hayen
Publié dans: Journal of Chromatography A, Numéro 1631, 2020, Page(s) 461584, ISSN 0021-9673
Éditeur: Elsevier BV
DOI: 10.1016/j.chroma.2020.461584

Hypermutation of specific genomic loci of Pseudomonas putida for continuous evolution of target genes

Auteurs: Elena Velázquez, Beatriz Álvarez, Luis Ángel Fernández, Víctor de Lorenzo
Publié dans: Microbial Biotechnology, Numéro 15(9), 2022, Page(s) 2309-2323, ISSN 1751-7915
Éditeur: Wiley Open Access
DOI: 10.1111/1751-7915.14098

Gaining control of bacterial cellulose colonization by polyhydroxyalkanoate-producing microorganisms to develop bioplasticized ultrathin films

Auteurs: Campano, Cristina; Rivero-Buceta, Virginia; Fabra, María José; Prieto, M Auxiliadora
Publié dans: International Journal of Biological Macromolecules, Numéro Volume 223, Part A, 2022, Page(s) 1495-1505, ISSN 1879-0003
Éditeur: Elsevier B.V.
DOI: 10.1016/j.ijbiomac.2022.11.120

Quantitative assessment of morphological traits of planktonic bacterial aggregates

Auteurs: David R. Espeso, Esteban Martínez-García, Víctor de Lorenzo
Publié dans: Water Research, Numéro 188, 2021, Page(s) 116468, ISSN 0043-1354
Éditeur: Elsevier BV
DOI: 10.1016/j.watres.2020.116468

Low CyaA expression and anti‐cooperative binding of cAMP to CRP frames the scope of the cognate regulon of Pseudomonas putida

Auteurs: Alejandro Arce‐Rodríguez, Pablo I. Nikel, Belén Calles, Max Chavarría, Raúl Platero, Tino Krell, Victor Lorenzo
Publié dans: Environmental Microbiology, Numéro 23/3, 2021, Page(s) 1732-1749, ISSN 1462-2912
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.15422

Rapid colonization and biodegradation of untreated commercial polyethylene wrap by a new strain of Bacillus velezensis C5

Auteurs: Xianrui Liu, Yiming Zhang, Qiufeng Sun, Zihan Liu, Yilin Zhao, Aili Fan, Haijia Su
Publié dans: Journal of Environmental Management, 2021, ISSN 0301-4797
Éditeur: Academic Press
DOI: 10.1016/j.jenvman.2021.113848

Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates

Auteurs: Tanja Narancic, Manuel Salvador, Graham M. Hughes, Niall Beagan, Umar Abdulmutalib, Shane T. Kenny, Huihai Wu, Marta Saccomanno, Jounghyun Um, Kevin E. O'Connor, José I. Jiménez
Publié dans: Microbial Biotechnology, 2021, ISSN 1751-7915
Éditeur: WILEY
DOI: 10.1111/1751-7915.13712

Metabolic modelling approaches for describing and engineering microbial communities

Auteurs: Beatriz García-Jiménez, Jesús Torres-Bacete, Juan Nogales
Publié dans: Computational and Structural Biotechnology Journal, Numéro 19, 2021, Page(s) 226-246, ISSN 2001-0370
Éditeur: Elsevier B.V.
DOI: 10.1016/j.csbj.2020.12.003

A SsrA/NIa-based Strategy for Post-Translational Regulation of Protein Levels in Gram-negative Bacteria

Auteurs: Gonzalo Durante-Rodríguez, Belén Calles, Víctor Lorenzo, Pablo Nikel
Publié dans: BIO-PROTOCOL, Numéro 10/14, 2020, ISSN 2331-8325
Éditeur: Bio-101
DOI: 10.21769/bioprotoc.3688

The faulty SOS response of Pseudomonas putida KT2440 stems from an inefficient RecA‐LexA interplay

Auteurs: Özlem Akkaya, Tomás Aparicio, Danilo Pérez‐Pantoja, Víctor Lorenzo
Publié dans: Environmental Microbiology, Numéro 23/3, 2021, Page(s) 1608-1619, ISSN 1462-2912
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.15384

Biodegradation of polyether-polyurethane foam in yellow mealworms (Tenebrio molitor) and effects on the gut microbiome

Auteurs: Jiawei Liu, Jingyuan Liu, Bin Xu, Anming Xu, Shixiang Cao, Ren Wei, Jie Zhou, Min Jiang, Weiliang Dong
Publié dans: Chemosphere, 2022, ISSN 0045-6535
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.chemosphere.2022.135263

Rational flux-tuning of Halomonas bluephagenesis for co-production of bioplastic PHB and ectoine

Auteurs: Hong Ma, Yiqing Zhao, Wuzhe Huang, Lizhan Zhang, Fuqing Wu, Jianwen Ye, Guo-Qiang Chen
Publié dans: Nature Communications, Numéro 11/1, 2020, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-020-17223-3

Applications of phage-derived RNA-based technologies in synthetic biology

Auteurs: Wenhui Zhang, Qiong Wu
Publié dans: Synthetic and Systems Biotechnology, Numéro 5/4, 2020, Page(s) 343-360, ISSN 2405-805X
Éditeur: Science Direct
DOI: 10.1016/j.synbio.2020.09.003

Naked Bacterium: Emerging Properties of a Surfome-Streamlined Pseudomonas putida Strain

Auteurs: Esteban Martínez-García, Sofía Fraile, David Rodríguez Espeso, Davide Vecchietti, Giovanni Bertoni, Víctor de Lorenzo
Publié dans: ACS Synthetic Biology, Numéro 9/9, 2020, Page(s) 2477-2492, ISSN 2161-5063
Éditeur: American Chemical Society
DOI: 10.1021/acssynbio.0c00272

The metabolic potential of plastics as biotechnological carbon sources – Review and targets for the future

Auteurs: Till Tiso, Benedikt Winter, RenWei, Johann Hee, Jan de Witt, NickWierckx, Peter Quicker, Uwe T. Bornscheuer, André Bardow, Juan Nogales, Lars M.Blank
Publié dans: Metabolic Engineering, 2021, ISSN 1096-7176
Éditeur: Academic Press
DOI: 10.1016/j.ymben.2021.12.006

Environmental Performance of Pseudomonas putida with a Uracylated Genome

Auteurs: Elena Algar, Yamal Al‐Ramahi, Víctor Lorenzo, Esteban Martínez‐García
Publié dans: ChemBioChem, Numéro 21/22, 2020, Page(s) 3255-3265, ISSN 1439-4227
Éditeur: John Wiley & Sons Ltd.
DOI: 10.1002/cbic.202000330

Quantum Mechanical Investigation of the Oxidative Cleavage of the C–C Backbone Bonds in Polyethylene Model Molecules

Auteurs: Qixuan Jiang, Zhongyu Li, Ziheng Cui, Ren Wei, Kaili Nie, Haijun Xu, Luo Liu
Publié dans: Polymers, Numéro 13/16, 2021, Page(s) 2730, ISSN 2073-4360
Éditeur: MDPI
DOI: 10.3390/polym13162730

Insight into formation and biological characteristics of Aspergillus tubingensis-based aerobic granular sludge (AT-AGS) in wastewater treatment

Auteurs: Yingyun Chen, Jiye Ge, Shaojie Wang, Haijia Su
Publié dans: Science of The Total Environment, Numéro 739, 2020, Page(s) 140128, ISSN 0048-9697
Éditeur: Elsevier BV
DOI: 10.1016/j.scitotenv.2020.140128

Engineering Tropism of Pseudomonas putida toward Target Surfaces through Ectopic Display of Recombinant Nanobodies

Auteurs: Sofía Fraile, María Briones, Mónica Revenga-Parra, Víctor de Lorenzo, Encarnación Lorenzo, Esteban Martínez-García
Publié dans: ACS Synthetic Biology, Numéro 10/8, 2021, Page(s) 2049-2059, ISSN 2161-5063
Éditeur: American Chemical Society
DOI: 10.1021/acssynbio.1c00227

Defined Microbial Mixed Culture for Utilization of Polyurethane Monomers

Auteurs: Romualdus Nugraha Catur Utomo, Wing-Jin Li, Till Tiso, Christian Eberlein, Moritz Doeker, Hermann J. Heipieper, Andreas Jupke, Nick Wierckx, Lars M. Blank
Publié dans: ACS Sustainable Chemistry & Engineering, Numéro 8/47, 2020, Page(s) 17466-17474, ISSN 2168-0485
Éditeur: American Chemical Society
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Depolymerization of post-consumer PET bottles with engineered cutinase 1 from Thermobifida cellulosilytica

Auteurs: Zixuan Zhang, Shiming Huang, Di Cai, Chaofeng Shao, Changwei Zhang, Junhui Zhou, Ziheng Cui, Tianqi He, Changjing Chen, Biqiang Chen, Tianwei Tan
Publié dans: Green chemistry, Numéro 14639270, 2022, ISSN 1463-9270
Éditeur: Royal Society of Chemistry
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Application of a novel fluorogenic polyurethane analogue probe in polyester-degrading microorganisms screening by microfluidic droplet

Auteurs: Anming Xu, Jiawei Liu, Shixiang Cao, Bin Xu, Chengzhi Guo, Ziyi Yu, Xiaoqiang Chen, Jie Zhou, Weiliang Dong, Min Jiang
Publié dans: Microbial Biotechnology, 2022, ISSN 1751-7907
Éditeur: Blackwell Publishing Inc.
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Nano-immobilization of PETase enzyme for enhanced polyethylene terephthalate biodegradation

Auteurs: Jia, Yunpu Samak, Nadia A. Hao, Xuemi Chen, Zheng Yang, Gama Zhao, Xuhao Mu, Tingzhen Yang, Maohua Xing, Jianmin
Publié dans: Biochemical Engineering Journal, 2021, ISSN 1369-703X
Éditeur: Elsevier BV
DOI: 10.1016/j.bej.2021.108205

Contextual dependencies expand the re-usability of genetic inverters

Auteurs: Huseyin Tas; Lewis Grozinger; Ruud Stoof; V de Lorenzo; Angel Goñi-Moreno
Publié dans: Nature Communications, Numéro 3, 2021, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1101/2020.07.15.204651

Subcellular Architecture of the xyl Gene Expression Flow of the TOL Catabolic Plasmid of Pseudomonas putida mt-2

Auteurs: Juhyun Kim, Angel Goñi-Moreno, Víctor de Lorenzo
Publié dans: mBio, Numéro 12/1, 2021, ISSN 2161-2129
Éditeur: American Society for Microbiology
DOI: 10.1128/mbio.03685-20

Transcription-Associated Fluorescence-Activated Droplet Sorting for Di-rhamnolipid Hyperproducers

Auteurs: Anming Xu, Xiaoxiao Zhang, Shixiang Cao, Xiaoli Zhou, Ziyi Yu, Xiujuan Qian, Jie Zhou, Weiliang Dong, and Min Jiang
Publié dans: ACS Synthetic Biology, 2022, ISSN 2161-5063
Éditeur: American Chemical Society
DOI: 10.1021/acssynbio.1c00622

Rapid depolymerization of poly(ethylene terephthalate) thin films by a dual-enzyme system and its impact on material properties

Auteurs: Natalia A. Tarazona, Ren Wei, Stefan Brott, Lara Pfaff, Uwe T. Bornscheuer, Andreas Lendlein, Rainhard Machatschek
Publié dans: Chem Catalysis, 2022, ISSN 2667-1093
Éditeur: Cell Press
DOI: 10.1016/j.checat.2022.11.004

When microbial biotechnology meets material engineering

Auteurs: Ana M. Hernandez-Arriaga, Cristina Campano, Virginia Rivero-Buceta and M. Auxiliadora Prieto
Publié dans: Microbial Biotechnology, Numéro 2021, 2021, Page(s) 1-15, ISSN 1751-7915
Éditeur: John Wiley & Sons Ltd and Society for Applied Microbiology
DOI: 10.1111/1751-7915.13975

Standardization of regulatory nodes for engineering heterologous gene expression:a feasibility study

Auteurs: Pablo I. Nikel; Ilaria Benedetti; Nicolas T. Wirth; Víctor de Lorenzo; Belén Calles
Publié dans: Microbial Biotechnology, 2022, ISSN 1751-7915
Éditeur: Applied Microbiology and John Wiley & Sons Ltd.
DOI: 10.1111/1751-7915.14063

Mechanism-Based Design of Efficient PET Hydrolases

Auteurs: Ren Wei, Gerlis von Haugwitz, Lara Pfaff, Jan Mican, Christoffel P. S. Badenhorst, Weidong Liu, Gert Weber, Harry P. Austin, David Bednar, Jiri Damborsky, Uwe T. Bornscheuer
Publié dans: ACS Catalysis, 2022, ISSN 2155-5435
Éditeur: American Chemical Society
DOI: 10.1021/acscatal.1c05856

Unraveling 1,4-Butanediol Metabolism in Pseudomonas putida KT2440

Auteurs: Li, Wing Jin; Narancic, Tanja; Kenny, Shane T.; Niehoff, Paul-Joachim; O’Connor, Kevin; Blank, Lars M.; Wierckx, Nick
Publié dans: Frontiers in Microbiology, Numéro 19, 2020, ISSN 1664-302X
Éditeur: Frontiers Media
DOI: 10.18154/rwth-2020-05721

Automated design and implementation of a NOR gate in Pseudomonas putida

Auteurs: Huseyin Tas, Lewis Grozinger, Angel Goñi-Moreno, Victor de Lorenzo
Publié dans: Synthetic Biology, Numéro Volume 6, Numéro 1, 2021, ISSN 2397-7000
Éditeur: Oxford University Press
DOI: 10.1093/synbio/ysab024

Bio-upcycling of even and uneven medium-chain-length diols and dicarboxylates to polyhydroxyalkanoates using engineered Pseudomonas putida

Auteurs: Yannic S. Ackermann, Jan de Witt, Mariela P. Mezzina, Christoph Schroth, Tino Polen, Pablo I. Nikel, Benedikt Wynands and Nick Wierckx
Publié dans: Microbial Cell Factories, Numéro 23, 2024, Page(s) 54, ISSN 1475-2859
Éditeur: BioMed Central
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Recent Advances in Bioplastics: Application and Biodegradation

Auteurs: Tanja Narancic, Federico Cerrone, Niall Beagan, Kevin E. O’Connor
Publié dans: Polymers, Numéro 12/4, 2020, Page(s) 920, ISSN 2073-4360
Éditeur: MDPI
DOI: 10.3390/polym12040920

Biodegradation of low-density polyethylene by Microbulbifer hydrolyticus IRE-31

Auteurs: Zhongyu Li, Ren Wei, Meixi Gao, Yanru Ren, Bo Yu, Kaili Nie, Haijun Xu, Luo Liu
Publié dans: Journal of Environmental Management, Numéro 263, 2020, Page(s) 110402, ISSN 0301-4797
Éditeur: Academic Press
DOI: 10.1016/j.jenvman.2020.110402

Thermophilic whole‐cell degradation of polyethylene terephthalate using engineered Clostridium thermocellum

Auteurs: Fei Yan, Ren Wei, Qiu Cui, Uwe T. Bornscheuer, Ya‐Jun Liu
Publié dans: Microbial Biotechnology, 2020, ISSN 1751-7915
Éditeur: John Wiley & Sons Ltd
DOI: 10.1111/1751-7915.13580

Impact of the number of rhamnose moieties of rhamnolipids on the structure, lateral organization and morphology of model biomembranes

Auteurs: Marius Herzog; Lei Li; Christian C. Blesken; Gina Welsing; Till Tiso; Lars M. Blank; Roland Winter
Publié dans: Soft Matter, Numéro 4, 2021, Page(s) 3191-3206, ISSN 1744-683X
Éditeur: Royal Society of Chemistry
DOI: 10.18154/rwth-2021-04514

Construction and comparison of synthetic microbial consortium system (SMCs) by non-living or living materials immobilization and application in acetochlor degradation

Auteurs: Jingyuan Liu, Xiaoli Zhou, Tong Wang, Lingling Fan, Shixun Liu, Nan Wu, Anming Xu, Xiujuan Qian, Zhoukun Li, Min Jiang, Jie Zhou, Weiliang Dong
Publié dans: Journal of Hazardous Materials, 2022, ISSN 0304-3894
Éditeur: Elsevier BV
DOI: 10.1016/j.jhazmat.2022.129460

Chemical recycling of bioplastics: technical opportunities to preserve chemical functionality as path towards a circular economy

Auteurs: Merchan AL, Fischöder T, Hee J, Lehnertz MS, Osterthun O, Pielsticker S, Schleier J, Tiso T, Blank LM, Klankermayer J, Kneer R, Quicker P, Walther G, Palkovits R
Publié dans: Green Chemistry, 2022, ISSN 1463-9262
Éditeur: Royal Society of Chemistry
DOI: 10.1039/d2gc02244c

Biocatalysis in the Recycling Landscape for Synthetic Polymers and Plastics towards Circular Textiles

Auteurs: Christina Jönsson, Ren Wei, Antonino Biundo, Johan Landberg, Lisa Schwarz Bour, Fabio Pezzotti, Andreea Toca, Les M. Jacques, Uwe T. Bornscheuer, Per‐Olof Syrén
Publié dans: ChemSusChem, 2021, ISSN 1864-5631
Éditeur: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/cssc.202002666

Flexibility Regulation of Loops Surrounding the Tunnel Entrance in Cytochrome P450 Enhanced Substrate Access Substantially

Auteurs: Zhongyu Li, Shuaiqi Meng, Kaili Nie, Ulrich Schwaneberg, Mehdi D. Davari, Haijun Xu, Yu Ji, and Luo Liu
Publié dans: ACS Catalysis, Numéro 21555435, 2022, ISSN 2155-5435
Éditeur: American Chemical Society
DOI: 10.1021/acscatal.2c02258

Thermal and ultrasound foam control in biotechnology: a mini-review

Auteurs: Shahin Shah Khan; Irfan Ullah; Qingyun Wang; Haijun Xu; Till Tiso; Lars M. Blank; Luo Liu
Publié dans: Discover Chemical Engineering, 2022, ISSN 2730-7700
Éditeur: Springer
DOI: 10.1007/s43938-022-00016-z

Effective Production of Poly(3-hydroxybutyrate-co-4-hydroxybutyrate) by Engineered Halomonas bluephagenesis Grown on Glucose and 1,4-Butanediol

Auteurs: Lizhan Zhang, Jian-Wen Ye,Xu Zhang, Wuzhe Huang, Zhongnan Zhang, Yina Lin, Ge Zhang, Fuqing Wu, Ziyu Wang, Qiong Wu, Guo-Qiang Chen
Publié dans: Bioresource Technology, Numéro 2022-06, 2022, ISSN 1873-2976
Éditeur: Elsevier
DOI: 10.1016/j.biortech.2022.127270

Biosensor and chemo-enzymatic one-pot cascade applications to detect and transform PET-derived terephthalic acid in living cells

Auteurs: Thomas Bayer, Lara Pfaff, Yannick Branson, Aileen Becker, Shuke Wu, Uwe T.Bornscheuer, Ren Wei
Publié dans: iScience, 2022, ISSN 2589-0042
Éditeur: Elsevier Inc.
DOI: 10.1016/j.isci.2022.104326

SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes

Auteurs: Esteban Martínez-García, Sofía Fraile, Elena Algar, Tomás Aparicio, Elena Velázquez, Belén Calles, Huseyin Tas, Blas Blázquez, Bruno Martín, Clara Prieto, Lucas Sánchez-Sampedro, Morten H H Nørholm, Daniel C Volke, Nicolas T Wirth, Pavel Dvořák, Lorea Alejaldre, Lewis Grozinger, Matthew Crowther, Angel Goñi-Moreno, Pablo I Nikel, Juan Nogales, Víctor de Lorenzo
Publié dans: Nucleic Acids Research, Numéro 51(D1), 2023, Page(s) D1558-D1567, ISSN 1362-4962
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkac1059

Recent advances in the improvement of bi-directional electron transfer between abiotic/biotic interfaces in electron-assisted biosynthesis system

Auteurs: Bin Xu, Zhe Li, Yujia Jiang, Minjiao Chen, Boryann Chen, Fengxue Xin, Weiliang Dong, Min Jiang
Publié dans: Biotechnology Advances, 2021, Page(s) 107810, ISSN 0734-9750
Éditeur: Elsevier BV
DOI: 10.1016/j.biotechadv.2021.107810

Engineering and evaluation of thermostable IsPETase variants for PET degradation

Auteurs: Stefan Brott, Lara Pfaff, Josephine Schuricht, Jan-Niklas Schwarz, Dominique Böttcher, Christoffel P. S. Badenhorst, Ren Wei, Uwe T. Bornscheuer
Publié dans: Engineering in Life Sciences, 2021, ISSN 1618-2863
Éditeur: John Wiley & Sons, Inc.
DOI: 10.1002/elsc.202100105

Biosynthesis of diverse α,ω-diol-derived polyhydroxyalkanoates by engineered Halomonas bluephagenesis

Auteurs: Xu Yan, Xu Liu, Lin-Ping Yu, Fuqing Wu, Xirao-Ran Jiang, Guo-Qiang Chen
Publié dans: Metabolic Engineering, Numéro 2022-07, 2022, Page(s) 275-288, ISSN 1096-7184
Éditeur: Elsevier
DOI: 10.1016/j.ymben.2022.04.001

Recent advances in biocatalysts engineering for polyethylene terephthalate plastic waste green recycling

Auteurs: Nadia A. Samak, Yunpu Jia, Moustafa M. Sharshar, Tingzhen Mu, Maohua Yang, Sumit Peh, Jianmin Xing
Publié dans: Environment International, Numéro 145, 2020, Page(s) 106144, ISSN 0160-4120
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.envint.2020.106144

Biodegradation and up-cycling of polyurethanes: Progress, challenges, and prospects

Auteurs: Jiawei Liu, Jie He, Rui Xue, Bin Xu, Xiujuan Qian, Fengxue Xin, Lars M. Blank, Jie Zhou, Ren Wei, Weiliang Dong, Min Jiang
Publié dans: Biotechnology Advances, Numéro 48, 2021, Page(s) 107730, ISSN 0734-9750
Éditeur: Elsevier BV
DOI: 10.1016/j.biotechadv.2021.107730

Current progress on the biodegradation of synthetic plastics: from fundamentals to biotechnological applications.

Auteurs: Andler R, Tiso T, Blank L, Andreeßen C, Zampolli J, D’Afonseca V, Guajardo C, Díaz-Barrera A
Publié dans: Reviews in Environmental Science and Bio/Technology, 2022, ISSN 1572-9826
Éditeur: Springer
DOI: 10.1007/s11157-022-09631-2

Engineering adipic acid metabolism in Pseudomonas putida

Auteurs: Yannic S. Ackermann, Wing-Jin Li, Leonie Op de Hipt, Paul-Joachim Niehoff, William Casey, Tino Polen, Sebastian Köbbing, Hendrik Ballerstedt, Benedikt Wynands, Kevin O'Connor, Lars M. Blank, Nick Wierckx
Publié dans: Metabolic Engineering, Numéro 67, 2021, Page(s) 29-40, ISSN 1096-7176
Éditeur: Academic Press
DOI: 10.1016/j.ymben.2021.05.001

The Wsp intermembrane complex mediates metabolic control of the swim‐attach decision of Pseudomonas putida

Auteurs: Ángeles Hueso‐Gil, Belén Calles, Víctor Lorenzo
Publié dans: Environmental Microbiology, Numéro 22/8, 2020, Page(s) 3535-3547, ISSN 1462-2912
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.15126

Feasible Cluster Model Method for Simulating the Redox Potentials of Laccase CueO and Its Variant

Auteurs: Qixuan Jiang, Ziheng Cui, Ren Wei, Kaili Nie, Haijun Xu, Luo Liu
Publié dans: Frontiers in Bioengineering and Biotechnology, 2022, ISSN 2296-4185
Éditeur: Frontiers Media S.A.
DOI: 10.3389/fbioe.2022.957694

Recombinant protein production in the filamentous fungus Trichoderma

Auteurs: Huiling Wei, Mengyue Wu, Aili Fan, Haijia Su
Publié dans: Chinese Journal of Chemical Engineering, 2020, ISSN 1004-9541
Éditeur: Chemical Industry Press
DOI: 10.1016/j.cjche.2020.11.006

Comparative Analysis of the Behaviour of Marine Litter in Thermochemical Waste Treatment Processes

Auteurs: Johann Hee, Kai Schlögel, Simone Lechthaler, Jacqueline Plaster, Kristina Bitter, Lars Mathias Blank, Peter Quicker
Publié dans: Processes, Numéro 9/1, 2021, Page(s) 13, ISSN 2227-9717
Éditeur: MDPI
DOI: 10.3390/pr9010013

An automated DIY framework for experimental evolution of Pseudomonas putida

Auteurs: David R. Espeso, Pavel Dvořák, Tomás Aparicio, Víctor Lorenzo
Publié dans: Microbial Biotechnology, 2020, Page(s) 1-7, ISSN 1751-7915
Éditeur: John Wiley & Sons Ltd and Society for Applied Microbiology
DOI: 10.1111/1751-7915.13678

Multiple Substrate Binding Mode-Guided Engineering of a Thermophilic PET Hydrolase

Auteurs: Lara Pfaff; Jian Gao; Zhishuai Li; Anna Jäckering; Gert Weber; Jan Mican; Yinping Chen; Weiliang Dong; Xu Han; Christian G. Feiler; Yu-Fei Ao; Christoffel P. S. Badenhorst; David Bednar; Gottfried J. Palm; Michael Lammers; Jiri Damborsky; Birgit Strodel; Weidong Liu; Uwe T. Bornscheuer; Ren Wei
Publié dans: ACS Catalysis, 2022, ISSN 2155-5435
Éditeur: American Chemical Society
DOI: 10.1021/acscatal.2c02275

Granulation enhancement and microbial community shift of tylosin-tolerant aerobic granular sludge on the treatment of tylosin wastewater

Auteurs: Wei Xiong, Shaojie Wang, Nan Zhou, Yingyun Chen, Haijia Su
Publié dans: Bioresource Technology, Numéro 318, 2020, Page(s) 124041, ISSN 0960-8524
Éditeur: Elsevier BV
DOI: 10.1016/j.biortech.2020.124041

Picking the right metaphors for addressing microbial systems: economic theory helps understanding biological complexity

Auteurs: Juhyun Kim, Rafael Silva-Rocha, Víctor de Lorenzo
Publié dans: International Microbiology, 2021, ISSN 1139-6709
Éditeur: Sociedad Espanola de Microbiologia
DOI: 10.1007/s10123-021-00194-w

Grand Challenges for Industrializing Polyhydroxyalkanoates (PHAs)

Auteurs: Dan Tan, Ying Wang, Yi Tong, Guo-Qiang Chen
Publié dans: Trends in Biotechnology, Numéro 39/9, 2021, Page(s) 953-963, ISSN 0167-7799
Éditeur: Elsevier BV
DOI: 10.1016/j.tibtech.2020.11.010

Rapid Quantification of Polyhydroxyalkanoates Accumulated in Living Cells Based on Green Fluorescence Protein-Labeled Phasins: The qPHA Method

Auteurs: Xu Liu, Dianjie Li, Xu Yan, Zonghao Zhang, Shuang Zheng, Jingpeng Zhang, Wuzhe Huang, Fuqing Wu, Fangting Li, Guo-Qiang Chen
Publié dans: Biomacromolecules, Numéro 2022-10-10, 2022, Page(s) 4153-4166, ISSN 1526-4602
Éditeur: American Chemical Society
DOI: 10.1021/acs.biomac.2c00624

Transcriptional control of 2,4‐dinitrotoluene degradation in Burkholderia sp . R34 bears a regulatory patch that eases pathway evolution

Auteurs: Danilo Pérez‐Pantoja, Pablo I. Nikel, Max Chavarría, Víctor Lorenzo
Publié dans: Environmental Microbiology, Numéro 23/5, 2021, Page(s) 2522-2531, ISSN 1462-2912
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.15472

Seawater activated TiO2 photocatalyst for degradation of organic compounds

Auteurs: Max-Fabian Volhard, Jonas Johannes Christ, Lars Mathias Blank, Thomas Jüstel
Publié dans: Sustainable Chemistry and Pharmacy, Numéro 16, 2020, Page(s) 100251, ISSN 2352-5541
Éditeur: Elsevier
DOI: 10.1016/j.scp.2020.100251

The four Fs of the knowledge-based BioEconomy – A homage to Christian Patermann

Auteurs: Victor De Lorenzo
Publié dans: EFB Bioeconomy Journal, 2022, ISSN 2667-0410
Éditeur: Elsevier
DOI: 10.1016/j.bioeco.2022.100035

PHB production from food waste hydrolysates by Halomonas bluephagenesis Harboring PHB operon linked with an essential gene

Auteurs: Mengke Ji, Taoran Zheng, Ziyu Wang, Weijian Lai, Lizhan Zhang, Qianyi Zhang, Hongyi Yang, Si Meng, Wanghui Xu, Cuihuan Zhao, Qiong Wu, Guo-Qiang Chen
Publié dans: Metabolic Engineering, 2023, ISSN 1096-7176
Éditeur: Academic Press
DOI: 10.1016/j.ymben.2023.03.003

Hyperproduction of PHA copolymers containing high fractions of 4‐hydroxybutyrate (4HB) by outer membrane‐defected <i>Halomonas bluephagenesis</i> grown in bioreactors

Auteurs: Ziyu Wang; Yifei Zheng; Mengke Ji; Xu Zhang; Huan Wang; Yuemeng Chen; Qiong Wu; Guo‐Qiang Chen
Publié dans: Microbial Biotechnology, Numéro 2022-05, 2022, Page(s) 1586-1597, ISSN 1751-7907
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1751-7915.13999

Engineering the permeability of Halomonas bluephagenesis enhanced its chassis properties

Auteurs: Ziyu Wang, Qin Qin, Yifei Zheng, Fajin Li, Yiqing Zhao, Guo-Qiang Chen
Publié dans: Metabolic Engineering, Numéro 67, 2021, Page(s) 53-66, ISSN 1096-7176
Éditeur: Academic Press
DOI: 10.1016/j.ymben.2021.05.010

Hyperproduction of 3-hydroxypropionate by Halomonas bluephagenesis

Auteurs: Xiao-Ran Jiang; Xiao-Ran Jiang; Xu Yan; Lin-Ping Yu; Xin-Yi Liu; Guo-Qiang Chen
Publié dans: Nature Communications, Numéro 16, 2021, Page(s) 1531, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-021-21632-3

Golden Standard: A complete standard, portable, and interoperative MoClo tool for model and non-model bacterial hosts

Auteurs: Blas Blázquez, Jesús Torres-Bacete, David San Leon, Ryan Kniewel, Igor Martinez, Sandra Sordon, Aleksandra Wilczak, Sergio Salgado, Ewa Huszcza, Jarosław Popłoński, M Auxiliadora Prieto, Juan Nogales
Publié dans: bioRxiv, 2022, Page(s) 508659, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2022.09.20.508659

Cyanamide as a Highly Efficient Organocatalyst for the Glycolysis Recycling of PET

Auteurs: Zishuai Wang, Yu Jin, Yaoqiang Wang, Zequn Tang, Shaojie Wang, Gang Xiao, Haijia Su
Publié dans: ACS Sustainable Chemistry & Engineering, 2023, Page(s) 7965−7973, ISSN 2168-0485
Éditeur: American Chemical Society
DOI: 10.1021/acssuschemeng.2c01235

High-Efficiency Multi-site Genomic Editing (HEMSE) Made Easy.

Auteurs: Tomás Aparicio, Víctor de Lorenzo, Esteban Martínez-García
Publié dans: MIMB,volume 2479, Numéro 2479, 2022, Page(s) 37-52, ISBN 978-1-0716-2233-9
Éditeur: Humana, New York,
DOI: 10.1007/978-1-0716-2233-9_4

Großartige Winzlinge - Mikroben sind die heimlichen Herrscher der Welt. Und wir können sie für vieles nutzen.

Auteurs: Magdalena Hamm, Susan Schädlich, Anja Garms, Michael Stang
Publié dans: Das Magazin für neugierige Forscher, Numéro "#1, April 2020", 2020, Page(s) 2-5
Éditeur: Bundesministerium für Bildung und Forschung (BMBF)

Waste to plastics by enzymes and bacteria - From plastic waste to PHA using enzymes and the bacterium P. putida

Auteurs: MT
Publié dans: bioplastics MAGAZINE, Numéro 02/20 Vol. 15, 2020, Page(s) 22-24
Éditeur: Polymedia Publisher GmbH

Converting petrochemical plastic to biodegradable plastic

Auteurs: Narancic T., Wierckx N., Liu S., O'Connor K.E.
Publié dans: The Handbook of Polyhydroxyalkanoates – Microbial biosynthesis and feedstocks, 2020, ISBN 9780429296611
Éditeur: CRC press, Taylor & Francis Group

Microbes and Plastic – A Sustainable Duo for the Future

Auteurs: Birger Wolter, Henric M.T. Hintzen, Gina Welsing, Till Tiso, Lars M. Blank
Publié dans: Good Microbes in Medicine, Food Production, Biotechnology, Bioremediation, and Agriculture, Numéro one time book publication, 2022, Page(s) 294-311, ISBN 9781119762621
Éditeur: John Wiley & Sons Ltd
DOI: 10.1002/9781119762621.ch24

Fluorimetric high-throughput screening method for polyester hydrolase activity using polyethylene terephthalate nanoparticles

Auteurs: Lara Pfaff, Daniel Breite, Christoffel P.S. Badenhorst, Uwe T. Bornscheuer, Ren Wei
Publié dans: Enzymatic Plastic Degradation, Numéro 648, 2021, Page(s) 253-270, ISSN 0076-6879
Éditeur: Academic Press
DOI: 10.1016/bs.mie.2020.11.003

Anchor peptides promote degradation of mixed plastics for recycling

Auteurs: Yu Ji, Yi Lu, Hendrik Puetz, Ulrich Schwaneberg
Publié dans: Enzymatic Plastic Degradation, Numéro 648, 2021, Page(s) 271-292, ISBN 9780128220122
Éditeur: Elsevier
DOI: 10.1016/bs.mie.2020.12.027

Upcycling of hydrolyzed PET by microbial conversion to a fatty acid derivative

Auteurs: Gina Welsing, Birger Wolter, Henric M.T. Hintzen, Till Tiso, Lars M. Blank
Publié dans: Enzymatic Plastic Degradation, Numéro 648, 2021, Page(s) 391-421, ISBN 9780128220122
Éditeur: Elsevier
DOI: 10.1016/bs.mie.2020.12.025

Biotechnological approach for polyurethane recycling: Separation of diamines from by-products via liquid-liquid extractio

Auteurs: Eberz, J., Doeker, M. and Jupke, A.
Publié dans: Chemie Ingenieur Technik, Numéro 11, 2022, Page(s) 1351 - 1351, ISSN 1522-2640
Éditeur: Wiley-VCH GmbH
DOI: 10.1002/cite.202255341

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