Deliverables
Establishment of initial requirements on infrastructure as understood by academic and industrial partners with a starting point in existing services for genomics ELIXIR AAI REMS Federated EGA code documentation Beacon and for biobank discoverability BBMRI Directory
Report on private execution model implementation in operational environmentReport on unified open digital slide and annotation format specification
Report on status of operational services implementation
Report on status of operational services implementation (M30): Report on status of implementation of REMS, federated data access, Beacon, export to BBMRI Directory in the operational BIGPICTURE infrastructure
Overview of the legal frameworks of all countries involved in BIGPICTUREReport on landscape of guidelines, standards and regulatory requirements relevant for digital pathology, non-clinical
Report on landscape of guidelines standards and regulatory requirements relevant for digital pathology nonclinical
Report on hardware scalingReport on progress of BIGPICTURE hardware capacity scaling
Project websiteA public project website will be delivered
Report on integration and validation of QC algorithms and associated source code in the BIGPICTURE infrastructureReport on pilot operations
Report on results from T2.5 Pilot operation in WP2 Phase III Refinements
Report on landscape of guidelines, standards and regulatory requirements relevant for digital pathology, clinicalReport on status of pilot services implementation
Report on status of implementation of REMS federated data access Beacon export to BBMRI Directory in the pilot BIGPICTURE infrastructure
Report on private execution model implementation in pilot environmentReport on private execution model implantation in pilot environment
Report on the pilot system establishmentReport on establishment a pilot of stateoftheart systems development platform to support collaborative development of digital pathology adaptations to forks of existing services including version control issue tracking continuous integration and deployment
Report on node network organisation modelsustainable node network organisation model responsible for mediating and collecting datasets from beneficiaries and third parties and to contribute them to the BIGPICTURE data repository
Report on employment of quality control automationReport on results from 3.10 (qc tool)
Report on user requirements specification for CytomineEndusers eg clinical pathologists toxicological pathologists academic researchers will establish precise requirements for enduser tools incl user interfaces manual annotation tools and workflows and AI tools including programming interfaces inputsoutputs
Report on defined and first collected datasetsReport on results from 32 36 and 37
Whole-slide image format to DICOM conversion tools
Community as part of the BIGPICTURE website is online
Publications
Author(s):
Stephan Dooper, Geert Litjens
Published in:
MIDL 2022 Short Papers, Issue Yearly, 2022, Page(s) -
Publisher:
-
Author(s):
Stephan Dooper Geert Litjens Hans Pinckaers
Published in:
MEDICAL IMAGING MEETS NEURIPS An official NeurIPS Workshop - 14 December 2021, Issue Yearly, 2021, Page(s) -
Publisher:
-
Author(s):
Artur Jurgas, Marek Wodzinski, Weronika Celniak, Manfredo Atzori, Henning Mueller
Published in:
-, Issue 1-4, 2023, Page(s) IEEE
Publisher:
IEEE
DOI:
10.1109/embc40787.2023.10340997
Author(s):
Jeroen van der Laak,
Geert Litjens &
Francesco Ciompi
Published in:
Nature Medicine, Issue 27 (2021), 2021, Page(s) pages775–784, ISSN 1078-8956
Publisher:
Nature Publishing Group
DOI:
10.1038/s41591-021-01343-4
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