Evolution of pro- and eukaryotic commensals within the human gut

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Data Management Plan DMP

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Structure and function of the soil microbiome underlying N2O emissions from global wetlands

Autores: Mohammad Bahram, Mikk Espenberg, Jaan Pärn, Laura Lehtovirta-Morley, Sten Anslan, Kuno Kasak, Urmas Kõljalg, Jaan Liira, Martin Maddison, Mari Moora, Ülo Niinemets, Maarja Öpik, Meelis Pärtel, Kaido Soosaar, Martin Zobel, Falk Hildebrand, Leho Tedersoo, Ülo Mander
Publicado en: Nature Communications, Edición 20411723, 2022, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-022-29161-3

Microbiota Dysbiosis and Gut Barrier Dysfunction Associated with Non-Alcoholic Fatty Liver Disease Are Modulated by a Specific Metabolic Cofactors’ Combination

Autores: Sergio Quesada-Vázquez; Caitlin Bone; Shikha Saha; Iris Triguero; Marina Colom-Pellicer; Gerard Aragonès; Falk Hildebrand; Josep M. del Bas; Antoni Caimari; Naiara Beraza; Xavier Escoté
Publicado en: International Journal of Molecular Sciences, Edición 1, 2022, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms232213675

Dispersal strategies shape persistence and evolution of human gut bacteria

Autores: Falk Hildebrand, Toni I. Gossmann, Clemence Frioux, Ezgi Ozkurt, Pernille Neve Myers, Pamela Ferretti, Michael Kuhn, Mohammad Bahram, Henrik Bjørn Nielsen, Peer Bork
Publicado en: Cell Host & Microbe, Edición 19313128, 2021, ISSN 1931-3128
Editor: Cell Press
DOI: 10.1016/j.chom.2021.05.008

Gut microbiota dysbiosis in Parkinson disease: A systematic review and pooled analysis

Autores: Sven Kleine Bardenhorst; Emanuele Cereda; Marco Severgnini; Michela Barichella; Gianni Pezzoli; Ali Keshavarzian; Alessandro Desideri; Daniele Pietrucci; Velma T. E. Aho; Filip Scheperjans; Falk Hildebrand; Severin Weis; Markus Egert; André Karch; Marius Vital; Nicole Rübsamen
Publicado en: European Journal of Neurology, Edición 1, 2023, ISSN 1468-1331
Editor: Wiley
DOI: 10.1111/ene.15671

Global functional spectrum of soil bacterial communities

Autores: Gabin Piton; Steven Allison; Mohammad Bahram; Falk Hildebrand; Jennifer Martiny; Kathleen K. Treseder; Adam Martiny
Publicado en: Nature Microbiology, Edición 2, 2023, ISSN 2058-5276
Editor: Spring Nature
DOI: 10.1038/s41564-023-01465-0

LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis

Autores: Ezgi Özkurt, Joachim Fritscher, Nicola Soranzo, Duncan Y. K. Ng, Robert P. Davey, Mohammad Bahram, Falk Hildebrand
Publicado en: BMC Microbiome, Edición 20492618, 2022, ISSN 2049-2618
Editor: Springer Nature
DOI: 10.1186/s40168-022-01365-1

Enrichment of gut microbiome strains for cultivation-free genome sequencing using droplet microfluidics

Autores: Anna Pryszlak; Tobias Wenzel; Kiley West Seitz; Falk Hildebrand; Ece Kartal; Marco Raffaele Cosenza; Vladimir Benes; Peer Bork; Christoph A. Merten
Publicado en: Cell Reports Methods, Edición 26672375, 2022, ISSN 2667-2375
Editor: Cell Press
DOI: 10.1016/j.crmeth.2021.100137

Glacier melt-down changes habitat characteristics and unique microbial community composition and physiology in alpine lake sediments

Autores: Julia Kleinteich, Kurt Hanselmann, Falk Hildebrand, Andreas Kappler, Christiane Zarfl
Publicado en: FEMS Microbiology Ecology, Edición 01686496, 2022, ISSN 0168-6496
Editor: Blackwell
DOI: 10.1093/femsec/fiac075

Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease

Autores: Ryszard Kubinski, Jean-Yves Djamen-Kepaou, Timur Zhanabaev, Alex Hernandez-Garcia, Stefan Bauer, Falk Hildebrand, Tamas Korcsmaros, Sani Karam, Prévost Jantchou, Kamran Kafi, Ryan D. Martin
Publicado en: Frontiers in Genetics, Edición 16648021, 2022, ISSN 1664-8021
Editor: Frontiers Media
DOI: 10.3389/fgene.2022.784397

Population-level impacts of antibiotic usage on the human gut microbiome

Autores: Kihyun Lee, Sebastien Raguideau, Kimmo Sirén, Francesco Asnicar, Fabio Cumbo, Falk Hildebrand, Nicola Segata , Chang-Jun Cha, Christopher Quince
Publicado en: Nature Communications, 2023, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-023-36633-7

Enterosignatures define common bacterial guilds in the human gut microbiome

Autores: Clemence Frioux, Rebecca Ansorge, Ezgi Ozkurt, Chabname Ghassemi Nedjad, Joachim Fritscher, Christopher Quince, Sebastian M. Waszak, Falk Hildebrand
Publicado en: Cell Host & Microbe, 2023, ISSN 1931-3128
Editor: Cell Press
DOI: 10.1016/j.chom.2023.05.024

A single dietary factor, daily consumption of a fermented beverage, can modulate the gut microbiome within the same ethnic community

Autores: Santanu Das; Ezgi Özkurt; Tulsi Kumari Joishy; Dibyayan Deb; Ashis K. Mukherjee; Falk Hildebrand; Mojibur R. Khan
Publicado en: mSystems, Edición 1, 2023, ISSN 2379-5077
Editor: ASM
DOI: 10.1101/2023.01.18.524612

Ultra-resolution Metagenomics: When Enough Is Not Enough.

Autores: Falk Hildebrand
Publicado en: mSystems, Edición 00219193, 2022, ISSN 0021-9193
Editor: American Society for Microbiology
DOI: 10.1128/msystems.00881-21

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