Evolution of pro- and eukaryotic commensals within the human gut

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Structure and function of the soil microbiome underlying N2O emissions from global wetlands

Auteurs: Mohammad Bahram, Mikk Espenberg, Jaan Pärn, Laura Lehtovirta-Morley, Sten Anslan, Kuno Kasak, Urmas Kõljalg, Jaan Liira, Martin Maddison, Mari Moora, Ülo Niinemets, Maarja Öpik, Meelis Pärtel, Kaido Soosaar, Martin Zobel, Falk Hildebrand, Leho Tedersoo, Ülo Mander
Publié dans: Nature Communications, Numéro 20411723, 2022, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-022-29161-3

Microbiota Dysbiosis and Gut Barrier Dysfunction Associated with Non-Alcoholic Fatty Liver Disease Are Modulated by a Specific Metabolic Cofactors’ Combination

Auteurs: Sergio Quesada-Vázquez; Caitlin Bone; Shikha Saha; Iris Triguero; Marina Colom-Pellicer; Gerard Aragonès; Falk Hildebrand; Josep M. del Bas; Antoni Caimari; Naiara Beraza; Xavier Escoté
Publié dans: International Journal of Molecular Sciences, Numéro 1, 2022, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms232213675

Dispersal strategies shape persistence and evolution of human gut bacteria

Auteurs: Falk Hildebrand, Toni I. Gossmann, Clemence Frioux, Ezgi Ozkurt, Pernille Neve Myers, Pamela Ferretti, Michael Kuhn, Mohammad Bahram, Henrik Bjørn Nielsen, Peer Bork
Publié dans: Cell Host & Microbe, Numéro 19313128, 2021, ISSN 1931-3128
Éditeur: Cell Press
DOI: 10.1016/j.chom.2021.05.008

Gut microbiota dysbiosis in Parkinson disease: A systematic review and pooled analysis

Auteurs: Sven Kleine Bardenhorst; Emanuele Cereda; Marco Severgnini; Michela Barichella; Gianni Pezzoli; Ali Keshavarzian; Alessandro Desideri; Daniele Pietrucci; Velma T. E. Aho; Filip Scheperjans; Falk Hildebrand; Severin Weis; Markus Egert; André Karch; Marius Vital; Nicole Rübsamen
Publié dans: European Journal of Neurology, Numéro 1, 2023, ISSN 1468-1331
Éditeur: Wiley
DOI: 10.1111/ene.15671

Global functional spectrum of soil bacterial communities

Auteurs: Gabin Piton; Steven Allison; Mohammad Bahram; Falk Hildebrand; Jennifer Martiny; Kathleen K. Treseder; Adam Martiny
Publié dans: Nature Microbiology, Numéro 2, 2023, ISSN 2058-5276
Éditeur: Spring Nature
DOI: 10.1038/s41564-023-01465-0

LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis

Auteurs: Ezgi Özkurt, Joachim Fritscher, Nicola Soranzo, Duncan Y. K. Ng, Robert P. Davey, Mohammad Bahram, Falk Hildebrand
Publié dans: BMC Microbiome, Numéro 20492618, 2022, ISSN 2049-2618
Éditeur: Springer Nature
DOI: 10.1186/s40168-022-01365-1

Enrichment of gut microbiome strains for cultivation-free genome sequencing using droplet microfluidics

Auteurs: Anna Pryszlak; Tobias Wenzel; Kiley West Seitz; Falk Hildebrand; Ece Kartal; Marco Raffaele Cosenza; Vladimir Benes; Peer Bork; Christoph A. Merten
Publié dans: Cell Reports Methods, Numéro 26672375, 2022, ISSN 2667-2375
Éditeur: Cell Press
DOI: 10.1016/j.crmeth.2021.100137

Glacier melt-down changes habitat characteristics and unique microbial community composition and physiology in alpine lake sediments

Auteurs: Julia Kleinteich, Kurt Hanselmann, Falk Hildebrand, Andreas Kappler, Christiane Zarfl
Publié dans: FEMS Microbiology Ecology, Numéro 01686496, 2022, ISSN 0168-6496
Éditeur: Blackwell
DOI: 10.1093/femsec/fiac075

Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease

Auteurs: Ryszard Kubinski, Jean-Yves Djamen-Kepaou, Timur Zhanabaev, Alex Hernandez-Garcia, Stefan Bauer, Falk Hildebrand, Tamas Korcsmaros, Sani Karam, Prévost Jantchou, Kamran Kafi, Ryan D. Martin
Publié dans: Frontiers in Genetics, Numéro 16648021, 2022, ISSN 1664-8021
Éditeur: Frontiers Media
DOI: 10.3389/fgene.2022.784397

Population-level impacts of antibiotic usage on the human gut microbiome

Auteurs: Kihyun Lee, Sebastien Raguideau, Kimmo Sirén, Francesco Asnicar, Fabio Cumbo, Falk Hildebrand, Nicola Segata , Chang-Jun Cha, Christopher Quince
Publié dans: Nature Communications, 2023, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-023-36633-7

Enterosignatures define common bacterial guilds in the human gut microbiome

Auteurs: Clemence Frioux, Rebecca Ansorge, Ezgi Ozkurt, Chabname Ghassemi Nedjad, Joachim Fritscher, Christopher Quince, Sebastian M. Waszak, Falk Hildebrand
Publié dans: Cell Host & Microbe, 2023, ISSN 1931-3128
Éditeur: Cell Press
DOI: 10.1016/j.chom.2023.05.024

A single dietary factor, daily consumption of a fermented beverage, can modulate the gut microbiome within the same ethnic community

Auteurs: Santanu Das; Ezgi Özkurt; Tulsi Kumari Joishy; Dibyayan Deb; Ashis K. Mukherjee; Falk Hildebrand; Mojibur R. Khan
Publié dans: mSystems, Numéro 1, 2023, ISSN 2379-5077
Éditeur: ASM
DOI: 10.1101/2023.01.18.524612

Ultra-resolution Metagenomics: When Enough Is Not Enough.

Auteurs: Falk Hildebrand
Publié dans: mSystems, Numéro 00219193, 2022, ISSN 0021-9193
Éditeur: American Society for Microbiology
DOI: 10.1128/msystems.00881-21

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