Nano bubbles: how, when and why does science fail to correct itself?

Fraudes, exagérations et auteurs fantômes : la fiabilité de la littérature scientifique en question

Author(s): Bordignon Frédérique, Cabanac Guillaume, Labbé Cyril, Bernisson Maud
Published in: Fraudes, exagérations et auteurs fantômes : la fiabilité de la littérature scientifique en question, 2023, ISSN 1390-860X
Publisher: Ingenius

This digital-hygiene routine will protect your scholarship

Author(s): Cabanac Guillaume
Published in: This digital-hygiene routine will protect your scholarship, 2021, ISSN 0028-0836
Publisher: Nature Publishing Group

Lessons learned from automated screening of COVID-19 preprints

Author(s): Weissgerber, T., Riedel, N., Kilicoglu, H., Labbé, C., Eckmann, P., Ter Riet, G., Byrne, J., Cabanac, G., Capes-Davis, A., & Bandrowski, A.
Published in: European Journal of Public Health, 2023, ISSN 1101-1262
Publisher: Oxford University Press
DOI: 10.1093/eurpub/ckac129.127

Academic publishing: much effort to publish, too little to correct

Author(s): Bordignon, Frédérique
Published in: Ingenius, 2023, ISSN 1390-860X
Publisher: Ingenius

Publication scientifique : beaucoup d’efforts pour publier, trop peu pour corriger

Author(s): Bordignon Frédérique
Published in: Publication scientifique : beaucoup d’efforts pour publier, trop peu pour corriger, 2023, ISSN 1390-860X
Publisher: Ingenius

Identification of human gene research articles with wrongly identified nucleotide sequences

Author(s): Park, Y., West, R. A., Pathmendra, P., Favier, B., Stoeger, T., Capes-Davis, A., Cabanac, G., Labbé, C., & Byrne, J. A.
Published in: Life Sci. Alliance, 2022, ISSN 2575-1077
Publisher: Life Sci. Alliance
DOI: 10.26508/lsa.202101203

“Bosom peril” is not “breast cancer”: How weird computer-generated phrases help researchers find scientific publishing fraud

Author(s): Cabanac Guillaume, Labbé Cyril, Magazinov Alexander
Published in: The Bulletin of the Atomic Scientists, 2022, ISSN 0096-3402
Publisher: Atomic Scientists of Chicago

Fraud, exaggerations, and ghost authorship: questioning the reliability of the scholarly record

Author(s): Bordignon Frédérique, Cabanac Guillaume, Labbé Cyril, Bernisson Maud
Published in: Fraud, exaggerations, and ghost authorship: questioning the reliability of the scholarly record, 2023, ISSN 1390-860X
Publisher: Ingenius

Comment on: “FRET Nanoflares for Intracellular mRNA Detection: Avoiding False Positive Signals and Minimizing Effects of System Fluctuations”

Author(s): Boem Federico, Said Maha, Rost Nathanne, Gharib Mustafa, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Controlling the Synthesis and Assembly of Silver Nanostructures for Plasmonic Applications”

Author(s): Boem Federico, Said Maha, Rost Nathanne, Gharib Mustafa, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “A one-step synthesis of novel high pH-sensitive nitrogen-doped yellow fluorescent carbon dots and their detection application in living cells”

Author(s): Said Maha, Rost Nathanne
Published in: PubPeer, 2023
Publisher: PubPeer

"Comment on: ""DNA-templated nanoparticle complexes for photothermal imaging and labeling of cancer cells"""

Author(s): Linnane Emily, Boem Federico, Said Maha, Rost Nathanne, Gharib Mustafa, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Mining tortured acronyms from the scientific literature

Author(s): Clausse, A., Cabanac, G., Cuxac, P., & Labbé, C.
Published in: 2023
Publisher: Université Toulouse 3 – Paul Sabatier,

Comment on: “Imaging multiple microRNAs in living cells using ATP self-powered strand-displacement cascade amplification”

Author(s): Boem Federico, Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “DNA-Templated Nanoparticle Complex for Photothermal Imaging and Labeling of Cancer Cells”

Author(s): Linanne Emily, Boem Federico, Said Maha, Rost Nathanne, Gharib Mustafa, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Target-Triggered Catalytic Hairpin Assembly-Induced Core-Satellite Nanostructures for High-Sensitive “Off-to-On” SERS Detection of Intracellular MicroRNA”

Author(s): Boem Federico, Rost Nathanne, Lévy Raphaël, Said Maha
Published in: PubPeer, 2022
Publisher: PubPeer

Comment on: “Facet-energy inspired metal oxide extended hexapod decorated with graphene quantum dots: Sensitive detection of bisphenol A in live cells”

Author(s): Boem Federico, Said Maha, Rost Nathanne
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Cell-Penetrating Nanobiosensors for Pointillistic Intracellular Ca2+-Transient Detection”

Author(s): Boem Federico, Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Highly Photoluminescent Amino-Functionalized Graphene Quantum Dots Used for Sensing Copper Ions”

Author(s): Boem Federico, Rost Nathanne, Gharib Mustafa
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “SERS Nanoprobe for Intracellular Monitoring of Viral Mutations”

Author(s): Boem Federico, Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2022
Publisher: PubPeer

Comment on: “Dual functional molecule aided background-free SERS sensor for intracellular pH dynamic monitoring based on foldable DNA transition”

Author(s): Boem Federico, Said Maha, Rost Nathanne, Gharib Mustafa, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Cultures of Trial and Error: Identifying and Overcoming Barriers in Science Correction

Author(s): Melpomeni Antonakaki, Candida F. Sánchez Burmester, Mady Barbeitas
Published in: Center of Trial and Error, 2025
Publisher: Blog of Center of Trial and Error

NanoBubbles project: Data Management Plan

Author(s): Bordignon Frédérique
Published in: 2021
Publisher: Ecole des Ponts ; Université Sorbonne Paris Nord ; Université Grenoble-Alpes ; Radboud University ; Maastricht University ; Twente University ; CNRS ; IRIT - Institut de Recherche en Informatique de Toulouse

Comment on: “DNA–Gold Nanoparticle Conjugates for Intracellular miRNA Detection Using SurfaceEnhanced Raman Spectroscopy”

Author(s): Boem Federico, Said Maha, Rost Nathanne, Gharib Mustafa
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Aptazyme−Gold Nanoparticle Sensor for Amplified Molecular Probing in Living Cells”

Author(s): Boem Federico, Said Maha, Rost Nathanne, Gharib Mustafa, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

"Comment on: ""Aptazyme–Gold Nanoparticle Sensor for Amplified Molecular Probing in Living Cells"""

Author(s): Boem Federico, Said Maha, Rost Nathanne, Gharib Mustafa, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Extra- and Intracellular Monitoring of TGF‑β Using Single Immunoplasmonic Nanoprobes”

Author(s): Boem Federico, Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2022
Publisher: PubPeer

Replication of “Carbon-Dot-Based Dual-Emission Nanohybrid Produces a Ratiometric Fluorescent Sensor for In Vivo Imaging of Cellular Copper Ions”

Author(s): Said, M., Gharib, M., Zrig, S., & Lévy, R.
Published in: 2023
Publisher: Open Science Foundation

Comment on: “A novel nano-beacon based on DNA functionalized QDs for intracellular telomerase activity monitoring”

Author(s): Rost Nathanne
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Detection of Copper(II) Ions Using Glycine on Hydrazine-Adsorbed Gold Nanoparticles via Raman Spectroscopy”

Author(s): Rost Nathanne, Boem Federico
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Metal-Enhanced Fluorescence by Bifunctional Au Nanoparticles for Highly Sensitive and Simple Detection of Proteolytic Enzyme”

Author(s): Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “OFF-ON” biosensor based on nanosurface energy transfer between gold nanocrosses and graphene quantum dots for intracellular ATP sensing and tracking”

Author(s): Boem Federico, Said Maha, Rost Nathanne, Gharib Mustafa
Published in: PubPeer, 2023
Publisher: PubPeer

"Comment on: ""DNA-modified graphene quantum dots as a sensing platform for detection of Hg2+ in living cells"""

Author(s): Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Promoted “Click” SERS Detection for Precise Intracellular Imaging of Caspase‑3”

Author(s): Boem Federico, Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2022
Publisher: PubPeer

Comment on: “A Multicolor Nanoprobe for Detection and Imaging of Tumor-Related mRNAs in Living Cells”

Author(s): Said Maha, Rost Nathanne, Boem Federico, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

"Comment on: ""Fluorescent carbon dots with tunable emission by dopamine for sensing of intracellular pH, elementary arithmetic operations and living cells imaging based INHIBIT logic gate”"

Author(s): Rost Nathanne
Published in: PubPeer, 2023
Publisher: PubPeer

"Comment on: ""Hybrid Nanoparticle Pyramids for Intracellular Dual MicroRNAs Biosensing and Bioimaging"""

Author(s): Boem Federico, Said Maha, Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2022
Publisher: PubPeer

Comment on: “Graphene Oxide–Peptide Conjugate as an Intracellular Protease Sensor for Caspase-3 Activation Imaging in Live Cells”

Author(s): Boem Federico, Said Maha, Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Two-Photon Ratiometric Fluorescent Sensor Based on Specific Biomolecular Recognition for Selective and Sensitive Detection of Copper Ions in Live Cells”

Author(s): Gharib Mustafa, Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

"Comment on: ""Self-Protected DNAzyme Walker with a Circular Bulging DNA Shield for Amplified Imaging of miRNAs in Living Cells and Mice"""

Author(s): Rost Nathanne, Gharib Mustafa
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Ultrasound-responsive polymersomes capable of endosomal escape for efficient cancer therapy”

Author(s): Boem Federico, Rost Nathanne, Gharib Mustafa, Said Maha
Published in: PubPeer, 2023
Publisher: PubPeer

"Comment on: ""Interactions of neutral gold nanoparticles with DPPC and POPC lipid bilayers: simulation and experiment"""

Author(s): Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2022
Publisher: PubPeer

Comment on: “Facile synthesis of dual emission carbon dots for the ratiometric fluorescent detection of 2,4,6-trinitrophenol and cell imaging”

Author(s): Rost Nathanne
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Minute synthesis of extremely stable gold nanoparticles”

Author(s): Boem Federico, Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2022
Publisher: PubPeer

Year after year: Tortured conference series thriving in Computer Science

Author(s): Swart, W., & Cabanac, G.
Published in: 2023
Publisher: Université Toulouse III

Keynote lecture: Future of scientific conference

Author(s): Mody Cyrus
Published in: 2022
Publisher: AFM BioMed Conference

Comment on: “Phenanthroline-Derivative Functionalized Carbon Dots for Highly Selective and Sensitive Detection of Cu2+ and S2- and Imaging inside Live Cells”

Author(s): Boem Federico, Rost Nathanne, Gharib Mustafa
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Advances in Plasmonic Sensing at the NIR—A Review”

Author(s): Rost Nathanne
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “An aptamer-tethered DNA origami amplifier for sensitive and accurate imaging of intracellular microRNA”

Author(s): Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2023
Publisher: PubPeer

Comment on: “Silver nanoparticles decorated and tetraphenylethene probe doped silica nanoparticles: A colorimetric and fluorometric sensor for sensitive and selective detection and intracellular imaging of hydrogen peroxide”

Author(s): Boem Federico, Said Maha, Rost Nathanne, Lévy Raphaël
Published in: PubPeer, 2022
Publisher: PubPeer

Technology hype: Dealing with bold expectations and overpromising

Author(s): Jascha Bareis, Maximilian Roßmann, Frédérique Bordignon
Published in: TATuP - Zeitschrift für Technikfolgenabschätzung in Theorie und Praxis, Issue 32, 2023, Page(s) 10-71, ISSN 2567-8833
Publisher: Oekom Publishers GmbH
DOI: 10.14512/tatup.32.3.10

How an opioid giant deployed a playbook for moulding doctors’ minds

Author(s): Sismondo, Sergio; Bernisson, Maud
Published in: BMJ, Issue 28, 2025, ISSN 1756-1833
Publisher: BMJ

Legitimizing medical writing: Self-regulation or regulatory escape?

Author(s): Maud Bernisson
Published in: Gezondheidszorg en criminaliteit, 2025, ISSN 2211-9507
Publisher: Gezondheidszorg en criminaliteit

Moving Open Repositories out of the Blind Spot of Initiatives to Correct the Scholarly Record

Author(s): Frédérique Bordignon
Published in: Learned Publishing, Issue 38, 2025, ISSN 0953-1513
Publisher: Association of Learned and Professional Society Publishers
DOI: 10.1002/leap.1655

How big is the medical writing industry? Why it matters

Author(s): Maud Bernisson, Sergio Sismondo
Published in: Health Promotion International, Issue 40, 2025, ISSN 0957-4824
Publisher: Oxford University Press
DOI: 10.1093/heapro/daaf146

Promoting opioids, a story about how to influence medical science and opinions

Author(s): Maud Bernisson, Sergio Sismondo
Published in: Frontiers in Medicine, Issue 11, 2024, ISSN 2296-858X
Publisher: Frontiers Media SA
DOI: 10.3389/fmed.2024.1327939

Hyper-ambition and the Replication Crisis: Why Measures to Promote Research Integrity can Falter

Author(s): Yasemin J. Erden
Published in: Journal of Academic Ethics, Issue 23, 2025, Page(s) 25-38, ISSN 1570-1727
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s10805-024-09528-5

The rise and fall of promises: a preliminary method to trace promises in science and technology

Author(s): Stefan D. M. Gaillard, Sanda Hachana
Published in: Journal of Responsible Innovation, Issue 12, 2025, ISSN 2329-9460
Publisher: Informa UK Limited
DOI: 10.1080/23299460.2024.2440965

A Corpus of Critical Citations Contexts

Author(s): Frédérique Bordignon, Philippe Gambette
Published in: Journal of Open Humanities Data, Issue 10, 2024, ISSN 2059-481X
Publisher: Ubiquity Press, Ltd.
DOI: 10.5334/johd.215

Overpromising in science and technology: An evaluative conceptualization

Author(s): Stefan Gaillard, Cyrus Mody, Willem Halffman
Published in: TATuP - Zeitschrift für Technikfolgenabschätzung in Theorie und Praxis, Issue 32, 2024, Page(s) 60-65, ISSN 2567-8833
Publisher: Oekom Publishers GmbH
DOI: 10.14512/tatup.32.3.60

Technology hypes: Practices, approaches and assessments

Author(s): Jascha Bareis, Maximilian Roßmann, Frédérique Bordignon
Published in: TATuP - Zeitschrift für Technikfolgenabschätzung in Theorie und Praxis, Issue 32, 2023, Page(s) 11-16, ISSN 2567-8833
Publisher: Oekom Publishers GmbH
DOI: 10.14512/tatup.32.3.11

Deflating the Business Case for a Nanobubble

Author(s): Lévy Raphaël, Erden YJ
Published in: Public Research and Private Knowledge – Science in Times of Diverse Research Funding, 2021
Publisher: Center for Applied Philosophy of Science and Key Qualifications (ZiWiS)

Citation Context Classification: Critical vs Non-critical

Author(s): Sonita TE, Amira Barhoumi , Martin Lentschat, Frédérique Bordignon , Cyril Labbé, François Portet
Published in: 2022
Publisher: Association for Computational Linguistics

Detection of Tortured Phrases in Scientific Literature

Author(s): Martel Elena, Lentschat Martin, Labbé Cyril
Published in: Proceedings of the Second Workshop on Information Extraction from Scientific Publications - IJCNLP-AACL 2023, 2023, ISBN 979-8-89176-020-2
Publisher: The Asian Federation of Natural Language Processing and The Association for Computational Linguistics

What does it mean to correct the scientific record? A case study of the JACS (2000-2023)

Author(s): Bordignon Frédérique
Published in: 2023
Publisher: STI 2023
DOI: 10.55835/643e9f61c0a5d2717e40e59c

Error correction as part of research integrity practice: insights from a survey among chemical researchers

Author(s): Bordignon Frédérique
Published in: 2023
Publisher: Ecole Nationale des Ponts et Chaussées

NanoNER: Named Entity Recognition for Nanobiology Using Experts’ Knowledge and Distant Supervision

Author(s): Cheng, R., Lentschat, M., & Labbé, C.
Published in: Proceedings of the Second Workshop on Information Extraction from Scientific Publications - IJCNLP-AACL 2023, 2023
Publisher: WIESP 2023

Citation Context Classification: Critical vs Non-critical

Author(s): Te Sonita, Barhoumi Amira, Lentschat Martin, Bordignon Frédérique, Labbé Cyril, Portet François
Published in: Proceedings of the Third Workshop on Scholarly Document Processing, 2022, Page(s) 49-23
Publisher: Association for Computational Linguistics

On the trail of ignorance: Tracing neglected connections between toxicology and nanotechnology

Author(s): Sánchez Burmester, C. F., & Noël, M.
Published in: International Conference on the History of Chemistry, 2023
Publisher: International Conference on the History of Chemistry

Plenary invited lecture: Research Integrity: Lessons from the History of Science and Technology

Author(s): Roberts, L., & Mody, C.
Published in: 2023
Publisher: European Network of Research Integrity Offices 2023 Congress, Paris

The Geography of Retracted Papers: Showcasing a Crossref–Dimensions–NETSCITY Pipeline for the Spatial Analysis of Bibliographic Data

Author(s): Cabanac, G., Clausse, A., Jégou, L., & Maisonobe, M
Published in: 2023
Publisher: STI 2023

Ethics practice for science correction: the case of NanoBubbles

Author(s): Erden YJ
Published in: 2023
Publisher: Ethics Association

The 'Problematic Paper Screener' automatically selects suspect publications for post-publication (re)assessment

Author(s): Cabanac, G., Labbé, C., & Magazinov, A.
Published in: 2022
Publisher: Arxiv

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