Fostering high scientific quality in protein research in Eastern Slovakia

Deliverables

Workshop proceedings - directed evolution of proteins

The proceeding will summarize the outcomes lectures training of the organized workshop Workshop on Directed evolution of proteins serve as interim intermediates for creation of D12 Report on directed evolution of proteins

Project quality plan

Definition of a quality strategy providing a cohesive focus on the critical phases of the project in a structured and integrated way definition of explicit evaluation criteria by which the work will be measured as it progresses and the quality assurance process

Plan of conference attendance in the second half of the project and its execution

The plan for the conference attendance in the second half of the project will be elaborated at the beginning of the second half of the project month 19 and will be thoroughly controlled throughout the second18 months

Proceedings from the Summer school on biophotonics

The proceedings will summarize the lectures training and individual projects performed during the Summer school on biophotonics

Best practices recommendation from UZH and TUM

This manual will provide best practices from UZH and TUM in the field of research administration and management of scientific projects

Directed evolution of proteins proceedings

The proceedings will summarize the cornerstone aspects of the advanced techniques of directed evolution of proteins ribosome display yeast display as well as the application of highthroughput methods in the protein evolution and limitations that must be taken into consideration during development of proteins with designed properties The planning for commercial deployment of proteins created by the methods of directed evolution of proteins will be analyzed

The accomplishement of all planned mobility actions of the staff from CIB TIP-UPJS to Partners, knowledge upgrade in the selected area

A summary and final evaluation of all organized mobility actions of the staff from CIB TIPUPJS to partners during CasProt project

Manual for UPJS staff (How to write a successful proposal for EU project)

This manual will contain best practices of UZH and TUM in their effort to be successful in the EU scientific and research programs and calls eg H2020

Guide for preparation administration and management of European project for UPJS staff

This guide will provide best experiences and expertizes from UZH and TUM in the field of preparation aadministration and management of European projects

Kick- off meeting

Kick off meeting will be organized in the first month of the project and this deliverable will address the course and summary of this event

The accomplishment of all planned mobility actions of the experienced scientists from partnering organizations to CIB TIP-UPJS, knowledge upgrade in the selected areas

A summary and final evaluation of all organized mobility actions of the experienced scientists from partnering organizations to CIB TIPUPJS during CasProt project

Proceedings from the Summer school on protein stability and folding

The proceedings will summarize the lectures training and individual projects performed during the Summer school on protein folding and stability

Workshop proceedings - single molecule protein folding

The proceedings will summarize the outcomes lectures training of the organized workshop Workshop on protein stability and folding will serve as interim intermediates for creation of D11 Report on protein folding and stability

Report on protein stability and folding

Report on protein stability and folding will be a seminal document and a Project Milestone describing current progress in the understanding of protein folding and stability It will be reviewed by the Project Management Board in order to determine immediate directions in technical work and singlemolecule protein biophysics studies and to determine future changes in planned scientific work in this field

Proceedings from the Summer school on directed evolution of proteins

The proceedings will summarize the lectures training and individual projects performed during the Summer school on directed evolution of proteins

Report on the work progress in directed evolution of GPCRs

This report will address the progress in the work in four specific topics a Selection and ad hoc design of suitable GPCR candidates b Expression and purification of GPCRs eg opioid receptor NTR c Rational identification hot spots in a selected GPCRs for evolution d Application of protein evolution methods eg yeast display ribosome display to enhance the solubility of proteins opioid receptor NTR c Rational identification hot spots in a selected GPCRs for evolution d Application of protein evolution methods eg yeast display ribosome display to enhance the solubility of proteins

Report on direted evolution of proteins

The summarizing expert report on a reached stage of directed evolution methods ribosome and yeast displays at UPJS Besides the interim role as seed for the protein evolution methods expertise this report will be a crucial starting point for subsequent extremely competitive EU grant proposals submitted with the current Partners and additional participants

Report on the development of single molecule force assays

This report will address the progress in the work in three specific topics a Technical assistance and knowhow support in the development of specific biological assays for membrane proteins preparing materials and modifications for singlemolecule experiments b Handson design and casestudy of instrument development for singlemolecule forcefluorescence applications c Advanced instrument and software development for force and fluorescence experiments with selected GPCRs

Protein stability and folding proceedings

The proceedings will summarize the uptodate knowledge challenges and methodological advances significant for competitive research in the field of protein stability and folding and for commercial deployment of our findings in this field

Plan of conference attendance in the first half of the project and its execution

The plan for the conference attendance in the first half of the project will be elaborated at the beginning of the project month 2 and will be thoroughly controlled throughout the first 18 months

Data management plan

We will participate in the Pilot on Open Research Data in Horizon 20201 According to this fact we will prepare a Data Management Plan DMP which will address the relevant aspects of making data FAIR findable accessible interoperable and reusable including what data the project will generate whether and how it will be made accessible for verification and reuse and how it will be curated and preserved

Construction of CasProt project website

The published web site will be available to the broadest public and a report on its contents and performance will be delivered to the Commission The project website will be the leading information resource concerning the Project and relevant activities The website will be regularly updated in order to reflect actual Project activities and publishable achievements

Questionnaire on the potential commercial impact of our research

This questionnaire will be sent to various potential business partners with the aim of revealing their interest in collaborating on commercialization of our products

Press and public releases, posters

Report will be provided to the Commission on all promotional materials booklets leaflets posters targeting individual stakeholder groups eg companies public authorities health professionals health care providers investors professional associations but also the scientific community universities and research institutes abroad international partner institutions mass media in order to communicate information on the Project and its commercially or socially plausible outcomes more effectively Thus raising the public as well as professional commercial awareness

Report on the Evolution of the publications in high impact journals in the relevant research fields

Introduction of the peer reviewed publications of the coordinating institution published during the three years preceding the start of the project into Continuous reporting tool on the Funding and tenders portal

Publications

Cytotoxicity Study and Influence of SBA-15 Surface Polarity and pH on Adsorption and Release Properties of Anticancer Agent Pemetrexed

Author(s): Almáši, M.; Beňová, E.; Zeleňák, V.; Madaj, B.; Huntošová, V.; Brus, J.; Urbanová, M.; Bednarčík, J.; Hornbecq, V.
Published in: Materials Science and Engineering: C, Issue 109, 2020, Page(s) 110552, ISSN 0928-4931
Publisher: Elsevier BV
DOI: 10.1016/j.msec.2019.110552

Thermodynamic characterization of ferryl intermediates of bovine cytochrome c oxidase

Author(s): Tomková, A.; Sztachová, T.; Fabián, M.; Jancura, D.
Published in: Biochimica et Biophysica Acta (BBA) - Bioenergetics, Issue 1863 Supplement, 2022, Page(s) 148680 -27; S3.P10, ISSN 0005-2728
Publisher: Elsevier BV
DOI: 10.1016/j.bbabio.2022.148680

Measurements of the optical coefficients of the protoporphyrin IX endogenously producing yeast-based model in the visible and NIR

Author(s): Joniová, J.; Kažiková, V.; Gerelli, E.; Bánó, G.; Wagnières, G.
Published in: Journal of Biomedical Optics, Issue 23(07), 2018, Page(s) 075001, ISSN 1083-3668
Publisher: S P I E - International Society for Optical Engineering
DOI: 10.1117/1.jbo.23.7.075001

Specialized Craniofacial Anatomy of a Titanosaurian Embryo from Argentina

Author(s): Kundrát, M.; Coria, R.A.; Manning, T.W.; Snitting, D.; Chiappe, L.M.; Nudds, J.; Ahlberg, P.E.
Published in: Current Biology, Issue 30(21), 2020, Page(s) 4263-4269, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2020.07.091

Conformational properties od LOV2 domain and its C450A variant within broad pH region

Author(s): Petrenčáková, M.; Varhač, R.; Kožár, T.; Nemergut, M.; Jancura, D.; Schwer, M.S.; Sedlák, E.
Published in: Biophysical Chemistry, Issue 259, 2020, Page(s) 106337, ISSN 0301-4622
Publisher: Elsevier BV
DOI: 10.1016/j.bpc.2020.106337

Intelligent framework for radio access network design

Author(s): Maksymyuk, T.; Šlapak, E.; Bugár, G.; Horváth, D.; Gazda, J.
Published in: Wireless Networks, Issue 26(1), 2020, Page(s) 759-774, ISSN 1022-0038
Publisher: Baltzer Science Publishers B.V.
DOI: 10.1007/s11276-019-02172-7

Inner tooth morphology of Homo erectus from Zhoukoudian. New evidence from an old collection housed at Uppsala University, Sweden

Author(s): Zanolli, C.; Pan, L.; Dumoncel, J.; Kullmer, O.; Kundrát, M.; Liu, W.; Macchiarelli, R.; Mancini, L.; Schrenk, F.; Tuniz, C.
Published in: Journal of Human Evolution, Issue 116, 2018, Page(s) 1-13, ISSN 0047-2484
Publisher: Academic Press
DOI: 10.1016/j.jhevol.2017.11.002

In silico implementation of evolutionary paradigm in therapy design: Towards anti-cancer therapy as Darwinian process

Author(s): Brutovsky, B.; Horvath, D.
Published in: Journal of Theoretical Biology, Issue 485, 2020, Page(s) 110038, ISSN 0022-5193
Publisher: Academic Press
DOI: 10.1016/j.jtbi.2019.110038

Aggregation mechanism and branched 3D morphologies of pathological human light chain proteins under reducing conditions

Author(s): Džupponová, V.; Žoldák, G.
Published in: Colloids and Surfaces B: Biointerfaces, Issue 221, 2023, Page(s) 112983, ISSN 0927-7765
Publisher: Elsevier BV
DOI: 10.1016/j.colsurfb.2022.112983

Modulation of the electron-proton coupling at cytochrome a by the ligation of the oxidized catalytic center in bovine cytochrome c oxidase

Author(s): Kopcova, K.; Mikulova, L.; Pechova, I.; Sztachova, T.; Cizmar, E.; Jancura, D.; Fabian, M.
Published in: Biochimica et Biophysica Acta (BBA) - Bioenergetics, Issue 1861(9), 2020, Page(s) 148237, ISSN 0005-2728
Publisher: Elsevier BV
DOI: 10.1016/j.bbabio.2020.148237

Ultraviolet light illuminates the avian nature of the Berlin Archaeopteryx skeleton

Author(s): Schwartz, D.; Kundrát, M.; Tischlinger, H.; Dyke, G.; Carney, R.M.
Published in: Scientific Reports, Issue 9(1), 2019, Page(s) 6518, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-42823-5

Searching for combination therapy by clustering methods: Stimulation of PKC in Golgi apparatus combined with hypericin induced PDT

Author(s): Lenkavska, L.; Tomkova, S.; Horvath, D.; Huntosova, V.
Published in: Photodiagnosis and Photodynamic Therapy, Issue 31, 2020, Page(s) 101813, ISSN 1572-1000
Publisher: Elsevier BV
DOI: 10.1016/j.pdpdt.2020.101813

Phosphorescence Kinetics of Singlet Oxygen Produced by Photosensitization in Spherical Nanoparticles. Part II. The Case of Hypericin-Loaded Low-Density Lipoprotein Particles

Author(s): Datta, S.; Hovan, A.; Jutková, A.; Kruglik, S.G.; Jancura, D.; Miskovsky, P.; Bánó, G.
Published in: The Journal of Physical Chemistry B, Issue 122(20), 2018, Page(s) 5154-5160, ISSN 1520-6106
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcb.8b00659

Excitation of triplet states of hypericin in water mediated by hydrotropic cromolyn sodium salt

Author(s): Keša, P.; Jancura, D.; Kudláčová, J.; Valušová, E.; Antalík, M.
Published in: Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, Issue 193, 2018, Page(s) 185-191, ISSN 1386-1425
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.saa.2017.12.004

Photoinduced damage of AsLOV2 domain is accompanied by increased singlet oxygen production due to flavin dissociation

Author(s): Petrenčáková, M.; Filandr, F.; Hovan, A.; Yassaghi, G.; Man, P.; Kožár, T.; Schwer, M.S.; Jancura, D.; Plückthun, A.; Novák, P.; Miškovský, P.; Bánó, G.; Sedlák, E.
Published in: Scientific Reports, Issue 10(1), 2020, Page(s) 4119, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-60861-2

Techno-economic framework for dynamic operator selection in a multi-tier hetergeneous network

Author(s): Bugár, G.; Vološin, M.; Maksymyuk, T.; Zausinová, J.; Gazda, V.; Horváth, D.; Gazda, J.
Published in: Ad Hoc Networks, Issue 97, 2020, Page(s) 102007, ISSN 1570-8705
Publisher: Elsevier BV
DOI: 10.1016/j.adhoc.2019.102007

Autophagy and Apoptosis Induced in U87 MG Glioblastoma Cells by Hypericin-Mediated Photodynamic Therapy Can Be Photobiomodulated with 808 nm Light

Author(s): Pevna, V.; Wagnieres, G.; Huntosova, V.
Published in: Biomedicines, Issue 9, monthly, 2021, Page(s) 1-17, ISSN 2227-9059
Publisher: mdpi
DOI: 10.3390/biomedicines9111703

Hypericin can cross barriers in the chicken’s chorioallantoic membrane model when delivered in low-density lipoproteins

Author(s): Blascakova, L.; Horvath, D.; Belej, D.; Wagnieres, G.; Miskovsky, P.; Jancura, D.; Huntosova, V.
Published in: Photodiagnosis and Photodynamic Therapy, Issue 23, 2018, Page(s) 306-313, ISSN 1572-1000
Publisher: Elsevier BV
DOI: 10.1016/j.pdpdt.2018.07.009

Hofmeister effect on catalytic properties of chymotrypsin is substrate-dependent

Author(s): Dušeková, E.; Garajová, K.; Yavaşer, R.; Varhač, R.; Sedlák, E.
Published in: Biophysical Chemistry, Issue 243, 2018, Page(s) 8-16, ISSN 0301-4622
Publisher: Elsevier BV
DOI: 10.1016/j.bpc.2018.10.002

Explanation of inconsistencies in the determination of human serum albumin thermal stability

Author(s): Nemergut, Michal; Sedláková, Dagmar; Fabriciová, Gabriela; Belej, Dominik; Jancura, Daniel; Sedlák, Erik
Published in: International Journal of Biological Macromolecules, Issue 232, 2023, Page(s) 123379, ISSN 0141-8130
Publisher: Elsevier BV
DOI: 10.1016/j.ijbiomac.2023.123379

Encapsulation of anticancer drug curcumin and co-loading with photosensitizer hypericin into lipoproteins investigated by fluorescence resonance energy transfer

Author(s): Jutkova, A.M.; Chorvat, D.; Miskovsky, P.; Jancura, D.; Datta, S.
Published in: International Journal of Pharmaceutics, Issue 564, 2019, Page(s) 369-378, ISSN 0378-5173
Publisher: Elsevier BV
DOI: 10.1016/j.ijpharm.2019.04.062

Specific anion effect on properties of HRV 3C protease

Author(s): Eva Dušeková; Martin Berta; Dagmar Sedláková; David Řeha; Veronika Dzurillová; Anastasiia Shaposhnikova; Fatemeh Fadaei; Mária Tomková; Babak Minofar; Erik Sedlák
Published in: Biophysical Chemistry, Issue 287, 2022, Page(s) 106825, ISSN 0301-4622
Publisher: Elsevier BV
DOI: 10.1016/j.bpc.2022.106825

Toward understanding of the role of reversibility of phenotypic switching in the evolution of resistance to therapy

Author(s): Horvath, D.; Brutovsky, B.
Published in: Physics Letters A, Issue 382(24), 2018, Page(s) 1586-1600, ISSN 0375-9601
Publisher: Elsevier BV
DOI: 10.1016/j.physleta.2018.03.052

Adsorption properties, the pH-sensitive release of 5-fluorouracil and cytotoxicity studies of mesoporous silica drug delivery matrix

Author(s): Beňová, E.; Bergé-Lefranc, D.; Zeleňák, V.; Almáši, M.; Huntošová, V.; Hornebecq, V.
Published in: Applied Surface Science, Issue 504, 2020, Page(s) 144028, ISSN 0169-4332
Publisher: Elsevier BV
DOI: 10.1016/j.apsusc.2019.144028

Unsupervised Learning Algorithm for Intelligent Coverage Planning and Performance Optimization of Multitier Heterogeneous Network

Author(s): Gazda, J.; Šlapak, E.; Bugár, G.; Horváth, D.; Maksymyuk, T.; Jo, M.
Published in: IEEE Access, Issue 6, 2018, Page(s) 39807-39819, ISSN 2169-3536
Publisher: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2018.2847609

Nanomedical Relevance of the Intermolecular Interaction Dynamics—Examples from Lysozymes and Insulins

Author(s): Zhang, R.; Zhang, N.; Mohri, M.; Wu, L.; Eckert, T.; Krylov, V.B.; Antosova, A.; Ponikova, S.; Bednarikova, Z.; Markart, P.; Günther, A.; Norden, B.; Billeter, M.; Schauer, R.; Scheidig, A.J.; Ratha, B.N.; Bhunia, A.; Hesse, K.; Enani, M.A.; Steunmeyer, J.; Petridis, A.K.; Kozar, T.; Gazova, Z.; Nifantiev, N.E.; Siebert; H.Ch.
Published in: ACS Omega, Issue 4(2), 2019, Page(s) 4206-4220, ISSN 2470-1343
Publisher: American Chemical Society
DOI: 10.1021/acsomega.8b02471

Importance of Hypericin-Bcl2 interactions for biological effects at subcellular levels

Author(s): Stroffekova, K.; Tomkova, S.; Huntosova, V.; Kozar, T.
Published in: Photodiagnosis and Photodynamic Therapy, Issue 28, 2019, Page(s) 38-52, ISSN 1572-1000
Publisher: Elsevier BV
DOI: 10.1016/j.pdpdt.2019.08.016

Allosteric Inter-Domain Contacts in Bacterial Hsp70 Are Located in Regions That Avoid Insertion and Deletion Events

Author(s): Gala Michal; Pristaš Peter; Žoldák Gabriel
Published in: International Journal of Molecular Sciences, Issue 23(5), 2022, Page(s) 2788, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23052788

An Intermediate Incubation Period and Primitive Brooding in a Theropod Dinosaur

Author(s): Varricchio, D.J.; Kundrát, M.; Hogan, J.
Published in: Scientific Reports, Issue 8(1), 2018, Page(s) 12454, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-018-30085-6

A new conceptual framework for the therapy by optimized multidimensional pulses of therapeutic activity. The case of multiple myeloma model

Author(s): Horvath, D.; Brutovsky, B.
Published in: Journal of Theoretical Biology, Issue 454, 2018, Page(s) 292-309, ISSN 0022-5193
Publisher: Academic Press
DOI: 10.1016/j.jtbi.2018.06.015

Blockchain-Empowered Framework for Decentralized Network Management in 6G

Author(s): Maksymyuk, T.; Gazda, J.; Volosin, M.; Bugar, G.; Horvath, D.; Klymash, M.; Dohler, M.
Published in: IEEE Communications Magazine, Issue 58(9), 2020, Page(s) 86-92, ISSN 0163-6804
Publisher: Institute of Electrical and Electronics Engineers
DOI: 10.1109/mcom.001.2000175

Evolutionary disparity in the endoneurocranial configuration between small and gigantic tyrannosauroids

Author(s): Kundrát, M.; Xu, X.; Hančová, M.; Gajdoš, A.; Guo, Y.; Chen, D.
Published in: Historical Biology, Issue 32(5), 2020, Page(s) 620-634, ISSN 0891-2963
Publisher: Taylor & Francis
DOI: 10.1080/08912963.2018.1518442

Purification of MBP fusion proteins using engineered DARPinaffinity matrix

Author(s): Nemergut, M.; Skrabana, R.; Berta, M.; Plückthun, A.; Sedlak, E.
Published in: International Journal of Biological Macromolecules: Structure, Function and Interactions, Issue 187, 2021, Page(s) 105-112, ISSN 0141-8130
Publisher: Elsevier BV
DOI: 10.1016/j.ijbiomac.2021.07.117

Structural analysis of the neuropeptide substance P by using vibrational spectroscopy

Author(s): Jurasekova, Z.; Garcia-Leis, A.; Sanchez-Cortes, S.; Tinti, A.; Torreggiani, A.
Published in: Analytical and Bioanalytical Chemistry, Issue 411(28), 2019, Page(s) 7419-7430, ISSN 1618-2642
Publisher: Springer Verlag
DOI: 10.1007/s00216-019-02097-2

Modulation of global stability, ligand binding and catalytic properties of trypsin by anions

Author(s): Dušeková Eva, Garajová Katarína, Yavaşer Rukiye, Tomková Mária, Sedláková Dagmar, Dzurillová Veronika, Kulik Natalia, Fadaei Fatemeh, Shaposhnikova Anastasiia, Minofar Babak, Sedlák Erik
Published in: Biophysical Chemistry, Issue 288, 2022, Page(s) 106856, ISSN 0301-4622
Publisher: Elsevier BV
DOI: 10.1016/j.bpc.2022.106856

Structural Lesions of Proteins Connected to Lipid Membrane Damages Caused by Radical Stress: Assessment by Biomimetic Systems and Raman Spectroscopy

Author(s): Torreggiani, A.; Tinti, A.; Jurasekova, Z.; Capdevila, M.; Saracino, M.; Di Foggia, M.
Published in: Biomolecules, Issue 9(12), 2019, Page(s) 794, ISSN 2218-273X
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/biom9120794

Advances in the Study of Cerium Oxide Nanoparticles: New Insights into Antiamyloidogenic Activity

Author(s): Siposova, K.; Huntosova, V.; Shlapa, Y.; Lenkavska, L.; Macajova, M.; Belous, A.; Musatov, A.
Published in: ACS Applied Bio Materials, Issue 2(5), 2019, Page(s) 1884-1806, ISSN 2576-6422
Publisher: American Chemical Society
DOI: 10.1021/acsabm.8b00816

SlyD Accelerates trans-to-cis Prolyl Isomerization in a Mechanosignaling Protein under Load

Author(s): Sengupta, A.; Rognoni, L.E.; Merkel, U.; Žoldák, G.; Rief, M.
Published in: The Journal of Physical Chemistry B: Biophysical Chemistry, Biomaterials, Liquids, and Soft Matter, Issue 125(31), 2021, Page(s) 8712–8721, ISSN 1520-5207
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcb.1c03648

A polar dinosaur feather assemblage from Australia

Author(s): Kundrát, M.; Rich, T.H.; Lindgren, J.; Sjövall, P.; Vickers-Rich, P.; Chiappe, L.M.; Kear, B.P.
Published in: Gondwana Research, Issue 80, 2020, Page(s) 1-11, ISSN 1342-937X
Publisher: International Association for Godwana Research
DOI: 10.1016/j.gr.2019.10.004

The first specimen of Archaeopteryx from the Upper Jurassic Mörnsheim Formation of Germany

Author(s): Kundrát, M.; Nudds, J.; Kear, B.P.; Lü, J.; Ahlberg, P.
Published in: Historical Biology, Issue 31(1), 2019, Page(s) 3-63, ISSN 0891-2963
Publisher: Taylor & Francis
DOI: 10.1080/08912963.2018.1518443

Modeling and analysis of self-organizing UAV-assisted mobile networks with dynamic in-demand deployment

Author(s): Horvath, D.; Gazda, J.; Slapak, E.; Maksymyuk, T.
Published in: Entropy, Issue 21, 2019, Page(s) 1077, ISSN 1099-4300
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/e21111077

Unravelling the Excellent Chemical Stability and Bioavailability of Solvent Responsive Curcumin-Loaded 2-Ethyl-2-oxazoline-grad-2-(4-dodecyloxyphenyl)-2-oxazoline Copolymer Nanoparticles for Drug Delivery

Author(s): Datta, S.; Jutková, A.; Šrámková, P.; Lenkavská, L.; Huntošová, V.; Chorvát, D.; Miškovský, P.; Jancura, D.; Kronek, J.
Published in: Biomacromolecules, Issue 19(7), 2018, Page(s) 2459-2471, ISSN 1525-7797
Publisher: American Chemical Society
DOI: 10.1021/acs.biomac.8b00057

Universal platform for the generation of thermostabilized GPCRs that crystallize in LCP

Author(s): Jendrik Schöppe 1,2, Janosch Ehrenmann 1,3, Yann Waltenspühl 1 and Andreas Plückthun
Published in: NATURE PROTOCOLS, 2022, ISSN 0967-0912
Publisher: Institute of Materials
DOI: 10.1038/s41596-021-00660-9

Benefits of hypericin transport and delivery by low- and high-density lipoproteins to cancer cells: From in vitro to ex ovo

Author(s): Lenkavska, L.; Blascakova, L.; Jurasekova, Z.; Macajova, M.; Bilcik, B.; Cavarga, I.; Miskovsky, P.; Huntosova, V.
Published in: Photodiagnosis and Photodynamic Therapy, Issue 25, 2019, Page(s) 214-224, ISSN 1572-1000
Publisher: Elsevier BV
DOI: 10.1016/j.pdpdt.2018.12.013

Isothermal titration calorimetric study of the formation and decay of the p-form of cytochrome c oxidase

Author(s): Jancura, D.; Pechová. I.; Mikulová, Ľ.; Stupák, M.; Fabián, M.
Published in: Biochimica et Biophysica Acta (BBA) - Bioenergetics, Issue 1863 Supplement, 2022, Page(s) 148678 - 26; S3.P8, ISSN 0005-2728
Publisher: Elsevier BV
DOI: 10.1016/j.bbabio.2022.148678

Phosphorescence Kinetics of Singlet Oxygen Produced by Photosensitization in Spherical Nanoparticles. Part I. Theory

Author(s): Hovan, A.; Datta, S.; Kruglik, S.G.; Jancura, D.; Miskovsky, P.; Bánó, G.
Published in: The Journal of Physical Chemistry B, Issue 122(20), 2018, Page(s) 5147-5153, ISSN 1520-6106
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcb.8b00658

An Active, Ligand-Responsive Pulling Geometry Reports on Internal Signaling between Subdomains of the DnaK Nucleotide-Binding Domain in Single-Molecule Mechanical Experiments

Author(s): Meinhold, S.; Bauer, D.; Huber, J.; Merkel, U.; Weißl, A.; Žoldák, G.; Rief, M.
Published in: Biochemistry, Issue 58(47), 2019, Page(s) 4744-4750, ISSN 0006-2960
Publisher: American Chemical Society
DOI: 10.1021/acs.biochem.9b00155

Photobiomodulation and photodynamic therapy-induced switching of autophagy and apoptosis in human dermal fibroblasts

Author(s): Pevna Viktoria, Horvath Denis, Wagnieres Georges, Huntosova Veronika
Published in: Journal of Photochemistry and Photobiology B: Biology, Issue 234, 2022, Page(s) 112539, ISSN 1011-1344
Publisher: Elsevier BV
DOI: 10.1016/j.jphotobiol.2022.112539

A kinetic coupling between protein unfolding and aggregation controls time-dependent solubility of the human myeloma antibody light chain

Author(s): Džupponová, V.; Huntošová, V.; Žoldák, G.
Published in: Protein Science, Issue 29(12), 2020, Page(s) 2408-2421, ISSN 0961-8368
Publisher: Cold Spring Harbor Laboratory Press
DOI: 10.1002/pro.3968

Spheroidal Model of SKBR3 and U87MG Cancer Cells for Live Imaging of Caspase-3 during Apoptosis Induced by Singlet Oxygen in Photodynamic Therapy

Author(s): Pevná, V.; Máčajová, M.; Hovan, A.; Bánó, G.; Meta, M.; Bilčík, B.; Palková, J.; Huntosova, V.
Published in: Biomedicines, Issue 10(9), 2022, Page(s) 2141, ISSN 2227-9059
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/biomedicines10092141

Bone tissue histology of the Early Cretaceous bird Yanornis: evidence for a diphyletic origin of modern avian growth strategies within Ornithuromorpha

Author(s): Wang, J.; Hao, X.; Kundrát, M.; Liu, Z.; Uesugi, K.; Jurašeková, Z.; Guo, B.; Hoshino, M.; Li, Y.; Monfroy, Q.; Zhou, B.; Fabriciová, G.; Kang, A.; Wang, M.; Si, Y.; Gao, J.; Xu, G.; Li, Z.
Published in: Historical Biology, Issue 32(10), 2020, Page(s) 1422-1434, ISSN 0891-2963
Publisher: Taylor & Francis
DOI: 10.1080/08912963.2019.1593405

Inhibition of amyloid fibril formation and disassembly of pre-formed fibrils by natural polyphenol rottlerin

Author(s): Siposova, K.; Kozar, T.; Huntosova, V.; Tomkova, S.; Musatov, A.
Published in: Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Issue 1867(3), 2019, Page(s) 259-274, ISSN 1570-9639
Publisher: Elsevier BV
DOI: 10.1016/j.bbapap.2018.10.002

Electrochemically deposited silver detection substrate for surface-enhanced Raman spectroscopy cancer diagnostics.

Author(s): Orságová Králová, Z.; Oriňak, A.; Oriňaková, R.; Petruš, O.; Macko, J.; Radoňak, J.; Sukovská Lakyová, L.; Jurašeková, Z.; Smith, R.M.; Strečková, M.; Koval, K.
Published in: Journal of Biomedical Optics, Issue 23(07), 2018, Page(s) 075002, ISSN 1083-3668
Publisher: S P I E - International Society for Optical Engineering
DOI: 10.1117/1.jbo.23.7.075002

Single-molecule mechanical studies of chaperones and their clients

Author(s): Rief, Matthias; Žoldák, Gabriel
Published in: Biophysics Reviews, Issue 3, 2022, Page(s) 041301, ISSN 2688-4089
Publisher: AIP Publishing
DOI: 10.1063/5.0098033

Bending dynamics of viscoelastic photopolymer nanowires

Author(s): Kubacková, J.; Iványi, GT.; Kažiková, V.; Strejčková, A.; Hovan, A.; Žoldák, G.; Vizsnyiczai, G.; Kelemen, L.; Tomori, Z.; Bánó, G.
Published in: Applied Physics Letters, Issue 117(1), 2020, Page(s) 013707, ISSN 0003-6951
Publisher: American Institute of Physics
DOI: 10.1063/5.0014662

Destabilization effect of imidazolium cation-Hofmeister anion salts on cytochrome c

Author(s): Garajová, K.; Sedláková, D.; Berta, M.; Gazova, Z.; Sedlák, E.
Published in: International Journal of Biological Macromolecules, Issue 164, 2020, Page(s) 3808-3813, ISSN 0141-8130
Publisher: Elsevier BV
DOI: 10.1016/j.ijbiomac.2020.09.009

Peroxidase activity of cytochrome c in its compact state depends on dynamics of the heme region

Author(s): Tomášková, N.; Varhač, R.; Lysáková, V.; Musatov, A.; Sedlák, E.
Published in: Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Issue 1866(11), 2018, Page(s) 1073-1083, ISSN 1570-9639
Publisher: Elsevier BV
DOI: 10.1016/j.bbapap.2018.09.003

Synergistic Effects of Copper Sites on Apparent Stability of Multicopper Oxidase, Fet3p

Author(s): Sedlák, E.; Žoldák, G.; Wittung-Stafshede, P.
Published in: International Journal of Molecular Sciences, Issue 19(1), 2018, Page(s) 269, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms19010269

Modification of the kinetic stability of immunoglobulin G by solvent additives

Author(s): Schaefer, J.V.; Sedlák, E.; Kast, F.; Nemergut, M.; Plückthun, A.
Published in: MAbs, Issue 10(4), 2018, Page(s) 607-623, ISSN 1942-0862
Publisher: Taylor and Francis Online
DOI: 10.1080/19420862.2018.1450126

Dual effect of non-ionic detergent Triton X-100 on insulin amyloid formation

Author(s): Siposova, K.; Sedlak, E.; Kozar, E.; Nemergut, M.; Musatov, A.
Published in: Colloids and Surfaces B: Biointerfaces, Issue 173, 2019, Page(s) 709-718, ISSN 0927-7765
Publisher: Elsevier BV
DOI: 10.1016/j.colsurfb.2018.10.039

Protein Nanomechanics

Author(s): Žoldák Gabriel
Published in: Nanomaterials, Issue 12(19), 2022, Page(s) 3524, ISSN 2079-4991
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/nano12193524

Response of Heme Symmetry to the Redox State of Bovine Cytochrome c Oxidase

Author(s): Kopcova, K.; Blascakova, L.; Kozar, T.; Jancura, D.; Fabian, M.
Published in: Biochemistry, Issue 57(28), 2018, Page(s) 4105-4113, ISSN 0006-2960
Publisher: American Chemical Society
DOI: 10.1021/acs.biochem.8b00459

Interpretation of Single-Molecule Force Experiments on Proteins Using Normal Mode Analysis

Author(s): Bauer, J., Žoldák, G.
Published in: Nanomaterials, Issue 11(11), 2021, Page(s) 1-19, ISSN 2079-4991
Publisher: mdpi
DOI: 10.3390/nano11112795

Structural basis for the activation and ligand recognition of the human oxytocin receptor

Author(s): Yann Waltenspühl, Janosch Ehrenmann, Santiago Vacca, Cristian Thom, Ohad Medalia & Andreas Plückthun
Published in: Nature Communications, 2022, ISSN 0967-0912
Publisher: Institute of Materials
DOI: 10.1038/s41467-022-31325-0

In vitro identification of mitochondrial oxidative stress production by time-resolved fluorescence imaging of glioma cells

Author(s): Tomkova, S.; Misuth, M.; Lenkavska, L.; Miskovsky, P.; Huntosova, V.
Published in: Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Issue 1865(4), 2018, Page(s) 616-628, ISSN 0167-4889
Publisher: Elsevier BV
DOI: 10.1016/j.bbamcr.2018.01.012

Forearm bone histology of the small theropod Daliansaurus liaoningensis (Paraves: Troodontidae) from the Yixian Formation, Liaoning, China

Author(s): Shen, C.; Lü, J.; Gao, Ch.; Hoshino, M.; Uesugi, K.; Kundrát, M.
Published in: Historical Biology, Issue 31(2), 2019, Page(s) 253-261, ISSN 0891-2963
Publisher: Taylor & Francis
DOI: 10.1080/08912963.2017.1360296

HNK‐1 in Morphological Study of Development of the Cardiac Conduction System in Selected Groups of SauropsidaThe Anatomical Record [online]. 2018, 302(1), 69-82 [cit. 2022-06-29]. ISSN . Dostupné z: doi:10.1002/ar.23925

Author(s): Kvasilova, A.; Gregorovicova, M.; Kundrat, M.; Sedmera, D.
Published in: The Anatomical Record, Issue 302(1), 2019, Page(s) 69-82, ISSN 1932-8486
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/ar.23925

Ion-specific protein/water interface determines the Hofmeister effect on the kinetic stability of glucose oxidase

Author(s): Sedlák, E.; Sedláková, D.; Marek, J.; Hančár, J.; Garajová, K.; Žoldák, G.
Published in: The Journal of Physical Chemistry B, Issue 123(38), 2019, Page(s) 7965-7973, ISSN 1520-6106
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcb.9b05195

The Interplay among Subunit Composition, Cardiolipin Content, and Aggregation State of Bovine Heart Cytochrome c Oxidase

Author(s): Sedlák, E.; Kožár, T.; Musatov, A.
Published in: Cells, Issue 9(12), 2020, Page(s) 2588, ISSN 2073-4409
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cells9122588

Crystal structure of the α1B-adrenergic receptor reveals molecular determinants of selective ligandrecognition

Author(s): Mattia Deluigi 1, Lena Morstein 1,10, Matthias Schuster2,10, Christoph Klenk 1, Lisa Merklinger1,7, Riley R. Cridge3, Lazarus A. de Zhang3,4, Alexander Klipp 1,8, Santiago Vacca 1, Tasneem M. Vaid5, Peer R. E. Mittl 1, Pascal Egloff 1, Stefanie A. Eberle1,9, Oliver Zerbe 2, David K. Chalmers 6, Daniel J. Scott3,4✉ & Andreas Plückthun
Published in: nature communications, 2022, ISSN 0967-0912
Publisher: Institute of Materials
DOI: 10.1038/s41467-021-27911-3

A new jeholornithiform exhibits the earliest appearance of the fused sternum and pelvis in the evolution of avialan dinosaurs

Author(s): Wang, X.; Huang, J.; Kundrát, M.; Cau, A.; Liu, X.; Wang, Y.; Ju, S.
Published in: Journal of Asian Earth Sciences, Issue 199, 2020, Page(s) 104401, ISSN 1367-9120
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.jseaes.2020.104401

A folding nucleus and minimal ATP binding domain of Hsp70 identified by single-molecule force spectroscopy

Author(s): Bauer, D.; Meinhold, S.; Jakob, R.P.; Stigler, J.; Merkel, U.; Maier, T.; Rief, M.; Žoldák, G.
Published in: Proceedings of the National Academy of Sciences, Issue 115(18), 2018, Page(s) 4666-4671, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1716899115

A Vaccinia-based system for directed evolution of GPCRs in mammalian cells

Author(s): Christoph Klenk 1 , Maria Scrivens2, Anina Niederer 1, Shuying Shi2, Loretta Mueller2, Elaine Gersz 2, Maurice Zauderer 2, Ernest S. Smith2, Ralf Strohner3 & Andreas Plückthun
Published in: nature communications, 2023, ISSN 0967-0912
Publisher: Institute of Materials
DOI: 10.1038/s41467-023-37191-8

Entropy-Based Strategies for Rapid Pre-Processing and Classification of Time Series Data from Single-Molecule Force ExperimentsEntropy [online]. 2020, 22(6) [cit. 2022-06-29]. ISSN 0. Dostupné z: doi:10.3390/e22060701

Author(s): Horvath, D.; Žoldák, G.
Published in: Entropy, Issue 22(6), 2020, Page(s) 701, ISSN 1099-4300
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/e22060701

D2.1 Protein stability and folding proceedings

Author(s): Žoldák, G.; Sengupta, A.
Published in: Issue D10, 2022, Page(s) 1-20
Publisher: UPJŠ in Košice
DOI: 10.5281/zenodo.7130648

Self-assembly of recombinant spider silk protein eADF4(C16) triggered by pH

Author(s): Talafová, V.; Žoldák, G.; Humenik, M.; Scheibel, T.; Sedlák, E.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 198, ISSN 0175-7571
Publisher: Springer-Nature

D3.3 Proceedings from the Summer school on biophotonics

Author(s): Bánó, G.; Huntošová, V.; Jurašeková, Z.
Published in: Deliverables - CasProt project, Issue D16, 2023, Page(s) 1-73
Publisher: UPJŠ in Košice
DOI: 10.5281/zenodo.8202367

D3.2 Proceedings from the Summer school on directed evolution of proteins

Author(s): Tomková, M.
Published in: Issue D15, 2023, Page(s) 1-44
Publisher: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.8172087

Development of haloalkane dehalogenases by ribosome display

Author(s): Dzurillová, V.; Berta, M.; Tomková, M.; Sedlák, E.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 122, ISSN 0175-7571
Publisher: Springer-Nature

Viscosity measurements using flexible microstructures.

Author(s): Kubackova, J.; Slabý, C.; Horvath, D.; Hovan, A.; Iványi, G. T.; Vizsnyiczai, G.; Kelemen, L.; Strejčková, A.; Tomori, Z.; Bánó, G.
Published in: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) L20
Publisher: Regional Biophysics Conference

D2.4 Workshop proceedings - directed evolution of proteins

Author(s): Sedlák, E.
Published in: Issue D13, 2023, Page(s) 1-54
Publisher: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.8192733

The Brownian motion of flexible microstructures – towards viscosity measurements in microfluidic channels

Author(s): Slabý, C.; Kubacková, J.; Hovan, A.; Miškovský, P.; Tomori, Z.; Bánó, G.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 143, ISSN 0175-7571
Publisher: Springer-Nature

Time-resolved detection of oxidative stress level in cancer cells

Author(s): Huntošová, V.
Published in: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) L52
Publisher: Regional Biophysics Conference

Evolution of staphylokinase´s binding affinity by ribosome display technology

Author(s): Tomková, M.; Dzurillová, V.; Sedlák, E.
Published in: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P64
Publisher: Regional Biophysics Conference

Role the conformational and colloidal stability on time-dependence solubility of human myeloma antibody λ-light chain

Author(s): Džupponová, V.; Žoldák, G.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 122, ISSN 0175-7571
Publisher: Springer-Nature

Self-assembly kinetic model of recombinant spider silk protein EADF4(C16)

Author(s): Talafová, V.; Humeník, M.; Žoldák, G.; Scheibel, T.; Sedlák, E.
Published in: "26. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology with cooperation of Austrian and German Biochemical Section: supported by the FEBS3+ Meeting programme: ""Life is Biochemistry, Biochemistry is Life"": programme and abstract book", 2021, Page(s) 188, ISBN 9788090777910
Publisher: Venice Praha, s.r.o.

D5.1 Guide for preparation administration and management of European project for UPJS staff

Author(s): Rindošová, S.; Jureková, N.
Published in: Deliverables - CasProt project, Issue D23, 2023, Page(s) 1-26
Publisher: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.7774693

SVK: Úloha disulfidových väzieb amyloidotického ľahkého reťazca IgG pri tvorbe extracelulárnych agregátov (ENG: The role of disulfide bonds of amyloidotic IgG light chain in the formation of extracellular aggregates)

Author(s): Ďzupponová, V.; Žoldák, G.
Published in: Príroda len ťažko vydáva svoje tajomstvá: Zborník prác z vedeckej konferencie konanej pri príležitosti 100. výročia narodenia prof. MVDr. Michala Bartíka, DrSc., 2021, Page(s) 42-47, ISBN 9788080777241
Publisher: University of veterinary medicine and pharmacy in Košice

Salt-dependent antibody adsorption on water/solid interfaces

Author(s): Žoldák, G.; Džupponová, V.
Published in: Interfaces 2021: Book of abstracts, 2021, Page(s) 43
Publisher: Universita di Cagliari

Designing of LOV2 protein into efficient photosensitizer

Author(s): Felčíková, K.; Dzurillová, V.; Hovan, A.; Bánó, G.; Kožár, T.; Sedlák, E.
Published in: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P18
Publisher: Regional Biophysics Conference

Development of single-molecule protein biophysics

Author(s): Žoldák, G.
Published in: "Instruct-ERIC Webinar Series: Structure Meets Function - Webinar #13", 2021, Page(s) Talk 3
Publisher: Instruct-ERIC Webinar Series: Structure Meets Function

CasProt Zenodo upload guidelines

Author(s): Matta, Peter
Published in: 2022, Page(s) 1-4
Publisher: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.6399952

HaloTag technology in directed evolution of haloalkane dehalogenase

Author(s): Dzurillová, V.; Ambro, Ľ.; Artimovič, P.; Fecková, K.; Sedlák, E.
Published in: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P16
Publisher: Regional Biophysics Conference

Hofmeister effect on catalytic efficiency and conformation of 3C protease

Author(s): Dušeková, E.; Tomková, M.; Berta, M.; Dzurillová, V.; Sedláková, D.; Sedlák, E.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 121, ISSN 0175-7571
Publisher: Springer-Nature

Singlet oxygen production by LOV domain

Author(s): Sedlák, E.
Published in: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) L35
Publisher: Regional Biophysics Conference

D2.3 Workshop proceedings - single-molecule protein folding

Author(s): Žoldák, G.
Published in: Issue D12, 2023, Page(s) 1-22
Publisher: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.7788038

Flavin cofactor in AsLOV2 domain as efficient singlet oxygen producer

Author(s): Petrenčáková, M.; Filandr, F.; Hovan, A.; Man, P.; Kožár, T.; Novák, P.; Jancura, D.; Bánó, G.; Sedlák, E.
Published in: "26. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology with cooperation of Austrian and German Biochemical Section: supported by the FEBS3+ Meeting programme: ""Life is Biochemistry, Biochemistry is Life"": programme and abstract book.", 2021, Page(s) 61, ISBN 9788090777910
Publisher: Venice Praha, s.r.o.

Preparation of a ribosome extract for an in vitro protein evolution through ribosome display

Author(s): Tomková, M.; Berta, M.; Dzurillová, V.; Sedlák, E.
Published in: "26. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology with cooperation of Austrian and German Biochemical Section: supported by the FEBS3+ Meeting programme: ""Life is Biochemistry, Biochemistry is Life"": programme and abstract book", 2021, Page(s) 181, ISBN 9788090777910
Publisher: Venice Praha, s.r.o.

Structural in-depth analysis of iron complexes of plant gall polyphenols by optical spectroscopic techniques and DFT calculations

Author(s): Espina, A.; Sanchez-Cortes, S.; Cañamares, M. V.; Jurašeková, Z.
Published in: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P29
Publisher: Regional Biophysics Conference

Time-resolved singlet oxygen phosphorescence detection in live cell suspensions

Author(s): Hovan, A.; Pevná, V.; Huntošová, V.; Miskovsky, P.; Bánó, G.
Published in: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P25
Publisher: Regional Biophysics Conference

D2.2 Directed evolution of proteins proceedings

Author(s): Sedlák, E.
Published in: Issue D11, 2023, Page(s) 1-62
Publisher: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.8010104

SVK: Samozostavovanie rekombinantného pavúčieho proteínu do fibríl vplyvom pH a kozmotropných iónov (ENG: Self-assembly of recombinant spider silk protein eADF4(C16) triggered by pH and cosmotropic ions)

Author(s): Talafová, V.; Humenik, M.; Žoldák, G.; Scheibel, T.; Sedlák, E.
Published in: Príroda len ťažko vydáva svoje tajomstvá: Zborník prác z vedeckej konferencie konanej pri príležitosti 100. výročia narodenia prof. MVDr. Michala Bartíka, DrSc., 2021, Page(s) 83-89, ISBN 9788080777241
Publisher: University of veterinary medicine and pharmacy in Košice

D6.4 Data management plan

Author(s): Žoldák, G.; Pezlar, I.
Published in: Deliverables - CasProt project, Issue D29, 2022, Page(s) 1-28
Publisher: UPJŠ in Košice
DOI: 10.5281/zenodo.6555079

Thermodynamics of the formation and decay of the P-type ferryl formof cytochrome c oxidase in the reaction of the oxidized oxidase with H2O2

Author(s): Mikulova, L.; Pechova, I.; Stupak, M.; Fabian, M.; Jancura, D.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 126, ISSN 0175-7571
Publisher: Springer-Nature
DOI: 10.1007/s00249-021-01558-w

Modification of GPCR solubility by ribosome display

Author(s): Berta, M.; Dzurillová, V.; Tomková, M.; Sedlák, E.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 121, ISSN 0175-7571
Publisher: Springer-Nature

Single-molecule mechanics of proteins

Author(s): Žoldák, G.
Published in: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) L14
Publisher: Regional Biophysics Conference

The viscoelastic behaviour of photopolymer nanowires – experiments and modeling

Author(s): Slabý, C.; Kubacková, J.; Horvath, D.; Hovan, A.; Iványi, G. T.; Vizsnyiczai, G.; Kelemen, L.; Žoldák, G.; Tomori, Z.; Bánó, G.
Published in: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P57
Publisher: Regional Biophysics Conference

D5.2 Best practices recommendation from UZH and TUM

Author(s): Pezlar, I.; Rindošová, S.; Jureková, N.; Jenčušová, E. Z.
Published in: Deliverables - CasProt project, Issue D24, 2022, Page(s) 1-11
Publisher: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.7575110

D3.1 Proceedings from the Summer school on protein stability and folding

Author(s): Žoldák, G.
Published in: Issue D14, 2022, Page(s) 1-73
Publisher: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.6954538

Imaging of autophagic and mitochondrial proteins in 3D spheroids of U87 MG cancer cells during photodynamice therapy mediated with hypericin

Author(s): Pevná, V.; Tomková, S.; Huntošová, V.
Published in: 16th Multinational Congress on Microscopy - Book of Abstracts, Issue LS4-P-2499, 2022, Page(s) 276-277
Publisher: Czechoslovak Microscopy Society

Direct observation of chemo-mechanical coupling in the Hsp70 chaperone DnaK by single-molecule force experiments

Author(s): Rief, M.; Žoldák, G.
Published in: Instruct Biennial Structural Biology Conference - Abstract Booklet, Issue Poster No. 40, 2022, Page(s) 56
Publisher: The European Research Infrastructure for Integrative Structural Biology

Mechanics and evolution of Hsp70

Author(s): Žoldák, G.
Published in: 10th Slovak Biophysical Symposium - Book of Contributions, Issue SC6, 2022, Page(s) 44, ISBN 978-80-973719-4-4
Publisher: Slovak Biophysical Society and Biomedical Research Center Slovak Academy of Sciences
DOI: 10.5281/zenodo.6555096

Molecular mechanism of myeloma λ-type IgG light chain aggregation

Author(s): Džupponová, V.; Žoldák, G.
Published in: Instruct Biennial Structural Biology Conference - Abstract Booklet, Issue Poster No. 41, 2022, Page(s) 57
Publisher: The European Research Infrastructure for Integrative Structural Biology

Targeted photobiomodulation of cancer cells at 808 nm may improve efficacy of photodynamic therapy

Author(s): Pevná, V.; Tomková, S.; Huntošová, V.
Published in: 16th Multinational Congress on Microscopy - Book of Abstracts, Issue LS4-P-2498, 2022, Page(s) 274-275, ISBN 978-80-11-02253-2
Publisher: Czechoslovak Microscopy Society

Aggregation mechanism and morphologies of myelomatic human light chain

Author(s): Džupponová, V.; Žoldák, G.
Published in: 10th Slovak Biophysical Symposium - Book of Contributions, Issue SC19, 2022, Page(s) 68-69, ISBN 978-80-973719-4-4
Publisher: Slovak Biophysical Society and Biomedical Research Center Slovak Academy of Sciences

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