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Fostering high scientific quality in protein research in Eastern Slovakia

Deliverables

Project quality plan

Definition of a quality strategy providing a cohesive focus on the critical phases of the project in a structured and integrated way definition of explicit evaluation criteria by which the work will be measured as it progresses and the quality assurance process

Kick- off meeting

Kick off meeting will be organized in the first month of the project and this deliverable will address the course and summary of this event

Report on protein stability and folding

Report on protein stability and folding will be a seminal document and a Project Milestone describing current progress in the understanding of protein folding and stability It will be reviewed by the Project Management Board in order to determine immediate directions in technical work and singlemolecule protein biophysics studies and to determine future changes in planned scientific work in this field

Report on direted evolution of proteins

The summarizing expert report on a reached stage of directed evolution methods ribosome and yeast displays at UPJS Besides the interim role as seed for the protein evolution methods expertise this report will be a crucial starting point for subsequent extremely competitive EU grant proposals submitted with the current Partners and additional participants

Plan of conference attendance in the first half of the project and its execution

The plan for the conference attendance in the first half of the project will be elaborated at the beginning of the project month 2 and will be thoroughly controlled throughout the first 18 months

Data management plan

We will participate in the Pilot on Open Research Data in Horizon 20201 According to this fact we will prepare a Data Management Plan DMP which will address the relevant aspects of making data FAIR findable accessible interoperable and reusable including what data the project will generate whether and how it will be made accessible for verification and reuse and how it will be curated and preserved

Construction of CasProt project website

The published web site will be available to the broadest public and a report on its contents and performance will be delivered to the Commission The project website will be the leading information resource concerning the Project and relevant activities The website will be regularly updated in order to reflect actual Project activities and publishable achievements

Questionnaire on the potential commercial impact of our research

This questionnaire will be sent to various potential business partners with the aim of revealing their interest in collaborating on commercialization of our products

Report on the Evolution of the publications in high impact journals in the relevant research fields

Introduction of the peer reviewed publications of the coordinating institution published during the three years preceding the start of the project into Continuous reporting tool on the Funding and tenders portal

Searching for OpenAIRE data...

Publications

Cytotoxicity Study and Influence of SBA-15 Surface Polarity and pH on Adsorption and Release Properties of Anticancer Agent Pemetrexed

Author(s): Almáši, M.; Beňová, E.; Zeleňák, V.; Madaj, B.; Huntošová, V.; Brus, J.; Urbanová, M.; Bednarčík, J.; Hornbecq, V.
Published in: Materials Science and Engineering: C, 109, 2020, Page(s) 110552, ISSN 0928-4931
Publisher: Elsevier BV
DOI: 10.1016/j.msec.2019.110552

Measurements of the optical coefficients of the protoporphyrin IX endogenously producing yeast-based model in the visible and NIR

Author(s): Joniová, J.; Kažiková, V.; Gerelli, E.; Bánó, G.; Wagnières, G.
Published in: Journal of Biomedical Optics, 23(07), 2018, Page(s) 075001, ISSN 1083-3668
Publisher: S P I E - International Society for Optical Engineering
DOI: 10.1117/1.jbo.23.7.075001

Specialized Craniofacial Anatomy of a Titanosaurian Embryo from Argentina

Author(s): Kundrát, M.; Coria, R.A.; Manning, T.W.; Snitting, D.; Chiappe, L.M.; Nudds, J.; Ahlberg, P.E.
Published in: Current Biology, 30(21), 2020, Page(s) 4263-4269, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2020.07.091

Conformational properties od LOV2 domain and its C450A variant within broad pH region

Author(s): Petrenčáková, M.; Varhač, R.; Kožár, T.; Nemergut, M.; Jancura, D.; Schwer, M.S.; Sedlák, E.
Published in: Biophysical Chemistry, 259, 2020, Page(s) 106337, ISSN 0301-4622
Publisher: Elsevier BV
DOI: 10.1016/j.bpc.2020.106337

Intelligent framework for radio access network design

Author(s): Maksymyuk, T.; Šlapak, E.; Bugár, G.; Horváth, D.; Gazda, J.
Published in: Wireless Networks, 26(1), 2020, Page(s) 759-774, ISSN 1022-0038
Publisher: Baltzer Science Publishers B.V.
DOI: 10.1007/s11276-019-02172-7

Inner tooth morphology of Homo erectus from Zhoukoudian. New evidence from an old collection housed at Uppsala University, Sweden

Author(s): Zanolli, C.; Pan, L.; Dumoncel, J.; Kullmer, O.; Kundrát, M.; Liu, W.; Macchiarelli, R.; Mancini, L.; Schrenk, F.; Tuniz, C.
Published in: Journal of Human Evolution, 116, 2018, Page(s) 1-13, ISSN 0047-2484
Publisher: Academic Press
DOI: 10.1016/j.jhevol.2017.11.002

In silico implementation of evolutionary paradigm in therapy design: Towards anti-cancer therapy as Darwinian process

Author(s): Brutovsky, B.; Horvath, D.
Published in: Journal of Theoretical Biology, 485, 2020, Page(s) 110038, ISSN 0022-5193
Publisher: Academic Press
DOI: 10.1016/j.jtbi.2019.110038

Modulation of the electron-proton coupling at cytochrome a by the ligation of the oxidized catalytic center in bovine cytochrome c oxidase

Author(s): Kopcova, K.; Mikulova, L.; Pechova, I.; Sztachova, T.; Cizmar, E.; Jancura, D.; Fabian, M.
Published in: Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1861(9), 2020, Page(s) 148237, ISSN 0005-2728
Publisher: Elsevier BV
DOI: 10.1016/j.bbabio.2020.148237

Ultraviolet light illuminates the avian nature of the Berlin Archaeopteryx skeleton

Author(s): Schwartz, D.; Kundrát, M.; Tischlinger, H.; Dyke, G.; Carney, R.M.
Published in: Scientific Reports, 9(1), 2019, Page(s) 6518, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-42823-5

Searching for combination therapy by clustering methods: Stimulation of PKC in Golgi apparatus combined with hypericin induced PDT

Author(s): Lenkavska, L.; Tomkova, S.; Horvath, D.; Huntosova, V.
Published in: Photodiagnosis and Photodynamic Therapy, 31, 2020, Page(s) 101813, ISSN 1572-1000
Publisher: Elsevier BV
DOI: 10.1016/j.pdpdt.2020.101813

Phosphorescence Kinetics of Singlet Oxygen Produced by Photosensitization in Spherical Nanoparticles. Part II. The Case of Hypericin-Loaded Low-Density Lipoprotein Particles

Author(s): Datta, S.; Hovan, A.; Jutková, A.; Kruglik, S.G.; Jancura, D.; Miskovsky, P.; Bánó, G.
Published in: The Journal of Physical Chemistry B, 122(20), 2018, Page(s) 5154-5160, ISSN 1520-6106
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcb.8b00659

Excitation of triplet states of hypericin in water mediated by hydrotropic cromolyn sodium salt

Author(s): Keša, P.; Jancura, D.; Kudláčová, J.; Valušová, E.; Antalík, M.
Published in: Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 193, 2018, Page(s) 185-191, ISSN 1386-1425
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.saa.2017.12.004

Photoinduced damage of AsLOV2 domain is accompanied by increased singlet oxygen production due to flavin dissociation

Author(s): Petrenčáková, M.; Filandr, F.; Hovan, A.; Yassaghi, G.; Man, P.; Kožár, T.; Schwer, M.S.; Jancura, D.; Plückthun, A.; Novák, P.; Miškovský, P.; Bánó, G.; Sedlák, E.
Published in: Scientific Reports, 10(1), 2020, Page(s) 4119, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-60861-2

Techno-economic framework for dynamic operator selection in a multi-tier hetergeneous network

Author(s): Bugár, G.; Vološin, M.; Maksymyuk, T.; Zausinová, J.; Gazda, V.; Horváth, D.; Gazda, J.
Published in: Ad Hoc Networks, 97, 2020, Page(s) 102007, ISSN 1570-8705
Publisher: Elsevier BV
DOI: 10.1016/j.adhoc.2019.102007

Autophagy and Apoptosis Induced in U87 MG Glioblastoma Cells by Hypericin-Mediated Photodynamic Therapy Can Be Photobiomodulated with 808 nm Light

Author(s): Pevna, V.; Wagnieres, G.; Huntosova, V.
Published in: Biomedicines, 9, monthly, 2021, Page(s) 1-17, ISSN 2227-9059
Publisher: mdpi
DOI: 10.3390/biomedicines9111703

Hypericin can cross barriers in the chicken’s chorioallantoic membrane model when delivered in low-density lipoproteins

Author(s): Blascakova, L.; Horvath, D.; Belej, D.; Wagnieres, G.; Miskovsky, P.; Jancura, D.; Huntosova, V.
Published in: Photodiagnosis and Photodynamic Therapy, 23, 2018, Page(s) 306-313, ISSN 1572-1000
Publisher: Elsevier BV
DOI: 10.1016/j.pdpdt.2018.07.009

Hofmeister effect on catalytic properties of chymotrypsin is substrate-dependent

Author(s): Dušeková, E.; Garajová, K.; Yavaşer, R.; Varhač, R.; Sedlák, E.
Published in: Biophysical Chemistry, 243, 2018, Page(s) 8-16, ISSN 0301-4622
Publisher: Elsevier BV
DOI: 10.1016/j.bpc.2018.10.002

Encapsulation of anticancer drug curcumin and co-loading with photosensitizer hypericin into lipoproteins investigated by fluorescence resonance energy transfer

Author(s): Jutkova, A.M.; Chorvat, D.; Miskovsky, P.; Jancura, D.; Datta, S.
Published in: International Journal of Pharmaceutics, 564, 2019, Page(s) 369-378, ISSN 0378-5173
Publisher: Elsevier BV
DOI: 10.1016/j.ijpharm.2019.04.062

Toward understanding of the role of reversibility of phenotypic switching in the evolution of resistance to therapy

Author(s): Horvath, D.; Brutovsky, B.
Published in: Physics Letters A, 382(24), 2018, Page(s) 1586-1600, ISSN 0375-9601
Publisher: Elsevier BV
DOI: 10.1016/j.physleta.2018.03.052

Adsorption properties, the pH-sensitive release of 5-fluorouracil and cytotoxicity studies of mesoporous silica drug delivery matrix

Author(s): Beňová, E.; Bergé-Lefranc, D.; Zeleňák, V.; Almáši, M.; Huntošová, V.; Hornebecq, V.
Published in: Applied Surface Science, 504, 2020, Page(s) 144028, ISSN 0169-4332
Publisher: Elsevier BV
DOI: 10.1016/j.apsusc.2019.144028

Unsupervised Learning Algorithm for Intelligent Coverage Planning and Performance Optimization of Multitier Heterogeneous Network

Author(s): Gazda, J.; Šlapak, E.; Bugár, G.; Horváth, D.; Maksymyuk, T.; Jo, M.
Published in: IEEE Access, 6, 2018, Page(s) 39807-39819, ISSN 2169-3536
Publisher: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2018.2847609

Nanomedical Relevance of the Intermolecular Interaction Dynamics—Examples from Lysozymes and Insulins

Author(s): Zhang, R.; Zhang, N.; Mohri, M.; Wu, L.; Eckert, T.; Krylov, V.B.; Antosova, A.; Ponikova, S.; Bednarikova, Z.; Markart, P.; Günther, A.; Norden, B.; Billeter, M.; Schauer, R.; Scheidig, A.J.; Ratha, B.N.; Bhunia, A.; Hesse, K.; Enani, M.A.; Steunmeyer, J.; Petridis, A.K.; Kozar, T.; Gazova, Z.; Nifantiev, N.E.; Siebert; H.Ch.
Published in: ACS Omega, 4(2), 2019, Page(s) 4206-4220, ISSN 2470-1343
Publisher: American Chemical Society
DOI: 10.1021/acsomega.8b02471

Importance of Hypericin-Bcl2 interactions for biological effects at subcellular levels

Author(s): Stroffekova, K.; Tomkova, S.; Huntosova, V.; Kozar, T.
Published in: Photodiagnosis and Photodynamic Therapy, 28, 2019, Page(s) 38-52, ISSN 1572-1000
Publisher: Elsevier BV
DOI: 10.1016/j.pdpdt.2019.08.016

An Intermediate Incubation Period and Primitive Brooding in a Theropod Dinosaur

Author(s): Varricchio, D.J.; Kundrát, M.; Hogan, J.
Published in: Scientific Reports, 8(1), 2018, Page(s) 12454, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-018-30085-6

A new conceptual framework for the therapy by optimized multidimensional pulses of therapeutic activity. The case of multiple myeloma model

Author(s): Horvath, D.; Brutovsky, B.
Published in: Journal of Theoretical Biology, 454, 2018, Page(s) 292-309, ISSN 0022-5193
Publisher: Academic Press
DOI: 10.1016/j.jtbi.2018.06.015

Blockchain-Empowered Framework for Decentralized Network Management in 6G

Author(s): Maksymyuk, T.; Gazda, J.; Volosin, M.; Bugar, G.; Horvath, D.; Klymash, M.; Dohler, M.
Published in: IEEE Communications Magazine, 58(9), 2020, Page(s) 86-92, ISSN 0163-6804
Publisher: Institute of Electrical and Electronics Engineers
DOI: 10.1109/mcom.001.2000175

Evolutionary disparity in the endoneurocranial configuration between small and gigantic tyrannosauroids

Author(s): Kundrát, M.; Xu, X.; Hančová, M.; Gajdoš, A.; Guo, Y.; Chen, D.
Published in: Historical Biology, 32(5), 2020, Page(s) 620-634, ISSN 0891-2963
Publisher: Taylor & Francis
DOI: 10.1080/08912963.2018.1518442

Purification of MBP fusion proteins using engineered DARPinaffinity matrix

Author(s): Nemergut, M.; Skrabana, R.; Berta, M.; Plückthun, A.; Sedlak, E.
Published in: International Journal of Biological Macromolecules: Structure, Function and Interactions, 187, 2021, Page(s) 105-112, ISSN 0141-8130
Publisher: Elsevier BV
DOI: 10.1016/j.ijbiomac.2021.07.117

Structural analysis of the neuropeptide substance P by using vibrational spectroscopy

Author(s): Jurasekova, Z.; Garcia-Leis, A.; Sanchez-Cortes, S.; Tinti, A.; Torreggiani, A.
Published in: Analytical and Bioanalytical Chemistry, 411(28), 2019, Page(s) 7419-7430, ISSN 1618-2642
Publisher: Springer Verlag
DOI: 10.1007/s00216-019-02097-2

Structural Lesions of Proteins Connected to Lipid Membrane Damages Caused by Radical Stress: Assessment by Biomimetic Systems and Raman Spectroscopy

Author(s): Torreggiani, A.; Tinti, A.; Jurasekova, Z.; Capdevila, M.; Saracino, M.; Di Foggia, M.
Published in: Biomolecules, 9(12), 2019, Page(s) 794, ISSN 2218-273X
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/biom9120794

Advances in the Study of Cerium Oxide Nanoparticles: New Insights into Antiamyloidogenic Activity

Author(s): Siposova, K.; Huntosova, V.; Shlapa, Y.; Lenkavska, L.; Macajova, M.; Belous, A.; Musatov, A.
Published in: ACS Applied Bio Materials, 2(5), 2019, Page(s) 1884-1806, ISSN 2576-6422
Publisher: American Chemical Society
DOI: 10.1021/acsabm.8b00816

SlyD Accelerates trans-to-cis Prolyl Isomerization in a Mechanosignaling Protein under Load

Author(s): Sengupta, A.; Rognoni, L.E.; Merkel, U.; Žoldák, G.; Rief, M.
Published in: The Journal of Physical Chemistry B: Biophysical Chemistry, Biomaterials, Liquids, and Soft Matter, 125(31), 2021, Page(s) 8712–8721, ISSN 1520-5207
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcb.1c03648

A polar dinosaur feather assemblage from Australia

Author(s): Kundrát, M.; Rich, T.H.; Lindgren, J.; Sjövall, P.; Vickers-Rich, P.; Chiappe, L.M.; Kear, B.P.
Published in: Gondwana Research, 80, 2020, Page(s) 1-11, ISSN 1342-937X
Publisher: International Association for Godwana Research
DOI: 10.1016/j.gr.2019.10.004

The first specimen of Archaeopteryx from the Upper Jurassic Mörnsheim Formation of Germany

Author(s): Kundrát, M.; Nudds, J.; Kear, B.P.; Lü, J.; Ahlberg, P.
Published in: Historical Biology, 31(1), 2019, Page(s) 3-63, ISSN 0891-2963
Publisher: Taylor & Francis
DOI: 10.1080/08912963.2018.1518443

Modeling and analysis of self-organizing UAV-assisted mobile networks with dynamic in-demand deployment

Author(s): Horvath, D.; Gazda, J.; Slapak, E.; Maksymyuk, T.
Published in: Entropy, 21, 2019, Page(s) 1077, ISSN 1099-4300
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/e21111077

Unravelling the Excellent Chemical Stability and Bioavailability of Solvent Responsive Curcumin-Loaded 2-Ethyl-2-oxazoline-grad-2-(4-dodecyloxyphenyl)-2-oxazoline Copolymer Nanoparticles for Drug Delivery

Author(s): Datta, S.; Jutková, A.; Šrámková, P.; Lenkavská, L.; Huntošová, V.; Chorvát, D.; Miškovský, P.; Jancura, D.; Kronek, J.
Published in: Biomacromolecules, 19(7), 2018, Page(s) 2459-2471, ISSN 1525-7797
Publisher: American Chemical Society
DOI: 10.1021/acs.biomac.8b00057

Benefits of hypericin transport and delivery by low- and high-density lipoproteins to cancer cells: From in vitro to ex ovo

Author(s): Lenkavska, L.; Blascakova, L.; Jurasekova, Z.; Macajova, M.; Bilcik, B.; Cavarga, I.; Miskovsky, P.; Huntosova, V.
Published in: Photodiagnosis and Photodynamic Therapy, 25, 2019, Page(s) 214-224, ISSN 1572-1000
Publisher: Elsevier BV
DOI: 10.1016/j.pdpdt.2018.12.013

Phosphorescence Kinetics of Singlet Oxygen Produced by Photosensitization in Spherical Nanoparticles. Part I. Theory

Author(s): Hovan, A.; Datta, S.; Kruglik, S.G.; Jancura, D.; Miskovsky, P.; Bánó, G.
Published in: The Journal of Physical Chemistry B, 122(20), 2018, Page(s) 5147-5153, ISSN 1520-6106
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcb.8b00658

An Active, Ligand-Responsive Pulling Geometry Reports on Internal Signaling between Subdomains of the DnaK Nucleotide-Binding Domain in Single-Molecule Mechanical Experiments

Author(s): Meinhold, S.; Bauer, D.; Huber, J.; Merkel, U.; Weißl, A.; Žoldák, G.; Rief, M.
Published in: Biochemistry, 58(47), 2019, Page(s) 4744-4750, ISSN 0006-2960
Publisher: American Chemical Society
DOI: 10.1021/acs.biochem.9b00155

A kinetic coupling between protein unfolding and aggregation controls time-dependent solubility of the human myeloma antibody light chain

Author(s): Džupponová, V.; Huntošová, V.; Žoldák, G.
Published in: Protein Science, 29(12), 2020, Page(s) 2408-2421, ISSN 0961-8368
Publisher: Cold Spring Harbor Laboratory Press
DOI: 10.1002/pro.3968

Bone tissue histology of the Early Cretaceous bird Yanornis: evidence for a diphyletic origin of modern avian growth strategies within Ornithuromorpha

Author(s): Wang, J.; Hao, X.; Kundrát, M.; Liu, Z.; Uesugi, K.; Jurašeková, Z.; Guo, B.; Hoshino, M.; Li, Y.; Monfroy, Q.; Zhou, B.; Fabriciová, G.; Kang, A.; Wang, M.; Si, Y.; Gao, J.; Xu, G.; Li, Z.
Published in: Historical Biology, 32(10), 2020, Page(s) 1422-1434, ISSN 0891-2963
Publisher: Taylor & Francis
DOI: 10.1080/08912963.2019.1593405

Inhibition of amyloid fibril formation and disassembly of pre-formed fibrils by natural polyphenol rottlerin

Author(s): Siposova, K.; Kozar, T.; Huntosova, V.; Tomkova, S.; Musatov, A.
Published in: Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 1867(3), 2019, Page(s) 259-274, ISSN 1570-9639
Publisher: Elsevier BV
DOI: 10.1016/j.bbapap.2018.10.002

Electrochemically deposited silver detection substrate for surface-enhanced Raman spectroscopy cancer diagnostics.

Author(s): Orságová Králová, Z.; Oriňak, A.; Oriňaková, R.; Petruš, O.; Macko, J.; Radoňak, J.; Sukovská Lakyová, L.; Jurašeková, Z.; Smith, R.M.; Strečková, M.; Koval, K.
Published in: Journal of Biomedical Optics, 23(07), 2018, Page(s) 075002, ISSN 1083-3668
Publisher: S P I E - International Society for Optical Engineering
DOI: 10.1117/1.jbo.23.7.075002

Bending dynamics of viscoelastic photopolymer nanowires

Author(s): Kubacková, J.; Iványi, GT.; Kažiková, V.; Strejčková, A.; Hovan, A.; Žoldák, G.; Vizsnyiczai, G.; Kelemen, L.; Tomori, Z.; Bánó, G.
Published in: Applied Physics Letters, 117(1), 2020, Page(s) 013707, ISSN 0003-6951
Publisher: American Institute of Physics
DOI: 10.1063/5.0014662

Destabilization effect of imidazolium cation-Hofmeister anion salts on cytochrome c

Author(s): Garajová, K.; Sedláková, D.; Berta, M.; Gazova, Z.; Sedlák, E.
Published in: International Journal of Biological Macromolecules, 164, 2020, Page(s) 3808-3813, ISSN 0141-8130
Publisher: Elsevier BV
DOI: 10.1016/j.ijbiomac.2020.09.009

Peroxidase activity of cytochrome c in its compact state depends on dynamics of the heme region

Author(s): Tomášková, N.; Varhač, R.; Lysáková, V.; Musatov, A.; Sedlák, E.
Published in: Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 1866(11), 2018, Page(s) 1073-1083, ISSN 1570-9639
Publisher: Elsevier BV
DOI: 10.1016/j.bbapap.2018.09.003

Synergistic Effects of Copper Sites on Apparent Stability of Multicopper Oxidase, Fet3p

Author(s): Sedlák, E.; Žoldák, G.; Wittung-Stafshede, P.
Published in: International Journal of Molecular Sciences, 19(1), 2018, Page(s) 269, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms19010269

Modification of the kinetic stability of immunoglobulin G by solvent additives

Author(s): Schaefer, J.V.; Sedlák, E.; Kast, F.; Nemergut, M.; Plückthun, A.
Published in: MAbs, 10(4), 2018, Page(s) 607-623, ISSN 1942-0862
Publisher: Taylor and Francis Online
DOI: 10.1080/19420862.2018.1450126

Dual effect of non-ionic detergent Triton X-100 on insulin amyloid formation

Author(s): Siposova, K.; Sedlak, E.; Kozar, E.; Nemergut, M.; Musatov, A.
Published in: Colloids and Surfaces B: Biointerfaces, 173, 2019, Page(s) 709-718, ISSN 0927-7765
Publisher: Elsevier BV
DOI: 10.1016/j.colsurfb.2018.10.039

Response of Heme Symmetry to the Redox State of Bovine Cytochrome c Oxidase

Author(s): Kopcova, K.; Blascakova, L.; Kozar, T.; Jancura, D.; Fabian, M.
Published in: Biochemistry, 57(28), 2018, Page(s) 4105-4113, ISSN 0006-2960
Publisher: American Chemical Society
DOI: 10.1021/acs.biochem.8b00459

Interpretation of Single-Molecule Force Experiments on Proteins Using Normal Mode Analysis

Author(s): Bauer, J., Žoldák, G.
Published in: Nanomaterials, 11(11), 2021, Page(s) 1-19, ISSN 2079-4991
Publisher: mdpi
DOI: 10.3390/nano11112795

In vitro identification of mitochondrial oxidative stress production by time-resolved fluorescence imaging of glioma cells

Author(s): Tomkova, S.; Misuth, M.; Lenkavska, L.; Miskovsky, P.; Huntosova, V.
Published in: Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 1865(4), 2018, Page(s) 616-628, ISSN 0167-4889
Publisher: Elsevier BV
DOI: 10.1016/j.bbamcr.2018.01.012

Forearm bone histology of the small theropod Daliansaurus liaoningensis (Paraves: Troodontidae) from the Yixian Formation, Liaoning, China

Author(s): Shen, C.; Lü, J.; Gao, Ch.; Hoshino, M.; Uesugi, K.; Kundrát, M.
Published in: Historical Biology, 31(2), 2019, Page(s) 253-261, ISSN 0891-2963
Publisher: Taylor & Francis
DOI: 10.1080/08912963.2017.1360296

HNK‐1 in Morphological Study of Development of the Cardiac Conduction System in Selected Groups of SauropsidaThe Anatomical Record [online]. 2018, 302(1), 69-82 [cit. 2022-06-29]. ISSN . Dostupné z: doi:10.1002/ar.23925

Author(s): Kvasilova, A.; Gregorovicova, M.; Kundrat, M.; Sedmera, D.
Published in: The Anatomical Record, 302(1), 2019, Page(s) 69-82, ISSN 1932-8486
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/ar.23925

Ion-specific protein/water interface determines the Hofmeister effect on the kinetic stability of glucose oxidase

Author(s): Sedlák, E.; Sedláková, D.; Marek, J.; Hančár, J.; Garajová, K.; Žoldák, G.
Published in: The Journal of Physical Chemistry B, 123(38), 2019, Page(s) 7965-7973, ISSN 1520-6106
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcb.9b05195

The Interplay among Subunit Composition, Cardiolipin Content, and Aggregation State of Bovine Heart Cytochrome c Oxidase

Author(s): Sedlák, E.; Kožár, T.; Musatov, A.
Published in: Cells, 9(12), 2020, Page(s) 2588, ISSN 2073-4409
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cells9122588

A new jeholornithiform exhibits the earliest appearance of the fused sternum and pelvis in the evolution of avialan dinosaurs

Author(s): Wang, X.; Huang, J.; Kundrát, M.; Cau, A.; Liu, X.; Wang, Y.; Ju, S.
Published in: Journal of Asian Earth Sciences, 199, 2020, Page(s) 104401, ISSN 1367-9120
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.jseaes.2020.104401

A folding nucleus and minimal ATP binding domain of Hsp70 identified by single-molecule force spectroscopy

Author(s): Bauer, D.; Meinhold, S.; Jakob, R.P.; Stigler, J.; Merkel, U.; Maier, T.; Rief, M.; Žoldák, G.
Published in: Proceedings of the National Academy of Sciences, 115(18), 2018, Page(s) 4666-4671, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1716899115

Entropy-Based Strategies for Rapid Pre-Processing and Classification of Time Series Data from Single-Molecule Force ExperimentsEntropy [online]. 2020, 22(6) [cit. 2022-06-29]. ISSN 0. Dostupné z: doi:10.3390/e22060701

Author(s): Horvath, D.; Žoldák, G.
Published in: Entropy, 22(6), 2020, Page(s) 701, ISSN 1099-4300
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/e22060701

Self-assembly of recombinant spider silk protein eADF4(C16) triggered by pH

Author(s): Talafová, V.; Žoldák, G.; Humenik, M.; Scheibel, T.; Sedlák, E.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 198, ISSN 0175-7571
Publisher: Springer-Nature

Development of haloalkane dehalogenases by ribosome display

Author(s): Dzurillová, V.; Berta, M.; Tomková, M.; Sedlák, E.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 122, ISSN 0175-7571
Publisher: Springer-Nature

The Brownian motion of flexible microstructures – towards viscosity measurements in microfluidic channels

Author(s): Slabý, C.; Kubacková, J.; Hovan, A.; Miškovský, P.; Tomori, Z.; Bánó, G.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 143, ISSN 0175-7571
Publisher: Springer-Nature

Role the conformational and colloidal stability on time-dependence solubility of human myeloma antibody λ-light chain

Author(s): Džupponová, V.; Žoldák, G.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 122, ISSN 0175-7571
Publisher: Springer-Nature

Self-assembly kinetic model of recombinant spider silk protein EADF4(C16)

Author(s): Talafová, V.; Humeník, M.; Žoldák, G.; Scheibel, T.; Sedlák, E.
Published in: "26. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology with cooperation of Austrian and German Biochemical Section: supported by the FEBS3+ Meeting programme: ""Life is Biochemistry, Biochemistry is Life"": programme and abstract book", 2021, Page(s) 188, ISBN 9788090777910
Publisher: Venice Praha, s.r.o.

SVK: Úloha disulfidových väzieb amyloidotického ľahkého reťazca IgG pri tvorbe extracelulárnych agregátov (ENG: The role of disulfide bonds of amyloidotic IgG light chain in the formation of extracellular aggregates)

Author(s): Ďzupponová, V.; Žoldák, G.
Published in: Príroda len ťažko vydáva svoje tajomstvá: Zborník prác z vedeckej konferencie konanej pri príležitosti 100. výročia narodenia prof. MVDr. Michala Bartíka, DrSc., 2021, Page(s) 42-47, ISBN 9788080777241
Publisher: University of veterinary medicine and pharmacy in Košice

Salt-dependent antibody adsorption on water/solid interfaces

Author(s): Žoldák, G.; Džupponová, V.
Published in: Interfaces 2021: Book of abstracts, 2021, Page(s) 43
Publisher: Universita di Cagliari

Hofmeister effect on catalytic efficiency and conformation of 3C protease

Author(s): Dušeková, E.; Tomková, M.; Berta, M.; Dzurillová, V.; Sedláková, D.; Sedlák, E.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 121, ISSN 0175-7571
Publisher: Springer-Nature

Flavin cofactor in AsLOV2 domain as efficient singlet oxygen producer

Author(s): Petrenčáková, M.; Filandr, F.; Hovan, A.; Man, P.; Kožár, T.; Novák, P.; Jancura, D.; Bánó, G.; Sedlák, E.
Published in: "26. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology with cooperation of Austrian and German Biochemical Section: supported by the FEBS3+ Meeting programme: ""Life is Biochemistry, Biochemistry is Life"": programme and abstract book.", 2021, Page(s) 61, ISBN 9788090777910
Publisher: Venice Praha, s.r.o.

Preparation of a ribosome extract for an in vitro protein evolution through ribosome display

Author(s): Tomková, M.; Berta, M.; Dzurillová, V.; Sedlák, E.
Published in: "26. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology with cooperation of Austrian and German Biochemical Section: supported by the FEBS3+ Meeting programme: ""Life is Biochemistry, Biochemistry is Life"": programme and abstract book", 2021, Page(s) 181, ISBN 9788090777910
Publisher: Venice Praha, s.r.o.

SVK: Samozostavovanie rekombinantného pavúčieho proteínu do fibríl vplyvom pH a kozmotropných iónov (ENG: Self-assembly of recombinant spider silk protein eADF4(C16) triggered by pH and cosmotropic ions)

Author(s): Talafová, V.; Humenik, M.; Žoldák, G.; Scheibel, T.; Sedlák, E.
Published in: Príroda len ťažko vydáva svoje tajomstvá: Zborník prác z vedeckej konferencie konanej pri príležitosti 100. výročia narodenia prof. MVDr. Michala Bartíka, DrSc., 2021, Page(s) 83-89, ISBN 9788080777241
Publisher: University of veterinary medicine and pharmacy in Košice

Thermodynamics of the formation and decay of the P-type ferryl formof cytochrome c oxidase in the reaction of the oxidized oxidase with H2O2

Author(s): Mikulova, L.; Pechova, I.; Stupak, M.; Fabian, M.; Jancura, D.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 126, ISSN 0175-7571
Publisher: Springer-Nature
DOI: 10.1007/s00249-021-01558-w

Modification of GPCR solubility by ribosome display

Author(s): Berta, M.; Dzurillová, V.; Tomková, M.; Sedlák, E.
Published in: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 121, ISSN 0175-7571
Publisher: Springer-Nature