Fostering high scientific quality in protein research in Eastern Slovakia

Livrables

Workshop proceedings - directed evolution of proteins

The proceeding will summarize the outcomes lectures training of the organized workshop Workshop on Directed evolution of proteins serve as interim intermediates for creation of D12 Report on directed evolution of proteins

Project quality plan

Definition of a quality strategy providing a cohesive focus on the critical phases of the project in a structured and integrated way definition of explicit evaluation criteria by which the work will be measured as it progresses and the quality assurance process

Plan of conference attendance in the second half of the project and its execution

The plan for the conference attendance in the second half of the project will be elaborated at the beginning of the second half of the project month 19 and will be thoroughly controlled throughout the second18 months

Proceedings from the Summer school on biophotonics

The proceedings will summarize the lectures training and individual projects performed during the Summer school on biophotonics

Best practices recommendation from UZH and TUM

This manual will provide best practices from UZH and TUM in the field of research administration and management of scientific projects

Directed evolution of proteins proceedings

The proceedings will summarize the cornerstone aspects of the advanced techniques of directed evolution of proteins ribosome display yeast display as well as the application of highthroughput methods in the protein evolution and limitations that must be taken into consideration during development of proteins with designed properties The planning for commercial deployment of proteins created by the methods of directed evolution of proteins will be analyzed

The accomplishement of all planned mobility actions of the staff from CIB TIP-UPJS to Partners, knowledge upgrade in the selected area

A summary and final evaluation of all organized mobility actions of the staff from CIB TIPUPJS to partners during CasProt project

Manual for UPJS staff (How to write a successful proposal for EU project)

This manual will contain best practices of UZH and TUM in their effort to be successful in the EU scientific and research programs and calls eg H2020

Guide for preparation administration and management of European project for UPJS staff

This guide will provide best experiences and expertizes from UZH and TUM in the field of preparation aadministration and management of European projects

Kick- off meeting

Kick off meeting will be organized in the first month of the project and this deliverable will address the course and summary of this event

The accomplishment of all planned mobility actions of the experienced scientists from partnering organizations to CIB TIP-UPJS, knowledge upgrade in the selected areas

A summary and final evaluation of all organized mobility actions of the experienced scientists from partnering organizations to CIB TIPUPJS during CasProt project

Proceedings from the Summer school on protein stability and folding

The proceedings will summarize the lectures training and individual projects performed during the Summer school on protein folding and stability

Workshop proceedings - single molecule protein folding

The proceedings will summarize the outcomes lectures training of the organized workshop Workshop on protein stability and folding will serve as interim intermediates for creation of D11 Report on protein folding and stability

Report on protein stability and folding

Report on protein stability and folding will be a seminal document and a Project Milestone describing current progress in the understanding of protein folding and stability It will be reviewed by the Project Management Board in order to determine immediate directions in technical work and singlemolecule protein biophysics studies and to determine future changes in planned scientific work in this field

Proceedings from the Summer school on directed evolution of proteins

The proceedings will summarize the lectures training and individual projects performed during the Summer school on directed evolution of proteins

Report on the work progress in directed evolution of GPCRs

This report will address the progress in the work in four specific topics a Selection and ad hoc design of suitable GPCR candidates b Expression and purification of GPCRs eg opioid receptor NTR c Rational identification hot spots in a selected GPCRs for evolution d Application of protein evolution methods eg yeast display ribosome display to enhance the solubility of proteins opioid receptor NTR c Rational identification hot spots in a selected GPCRs for evolution d Application of protein evolution methods eg yeast display ribosome display to enhance the solubility of proteins

Report on direted evolution of proteins

The summarizing expert report on a reached stage of directed evolution methods ribosome and yeast displays at UPJS Besides the interim role as seed for the protein evolution methods expertise this report will be a crucial starting point for subsequent extremely competitive EU grant proposals submitted with the current Partners and additional participants

Report on the development of single molecule force assays

This report will address the progress in the work in three specific topics a Technical assistance and knowhow support in the development of specific biological assays for membrane proteins preparing materials and modifications for singlemolecule experiments b Handson design and casestudy of instrument development for singlemolecule forcefluorescence applications c Advanced instrument and software development for force and fluorescence experiments with selected GPCRs

Protein stability and folding proceedings

The proceedings will summarize the uptodate knowledge challenges and methodological advances significant for competitive research in the field of protein stability and folding and for commercial deployment of our findings in this field

Plan of conference attendance in the first half of the project and its execution

The plan for the conference attendance in the first half of the project will be elaborated at the beginning of the project month 2 and will be thoroughly controlled throughout the first 18 months

Data management plan

We will participate in the Pilot on Open Research Data in Horizon 20201 According to this fact we will prepare a Data Management Plan DMP which will address the relevant aspects of making data FAIR findable accessible interoperable and reusable including what data the project will generate whether and how it will be made accessible for verification and reuse and how it will be curated and preserved

Construction of CasProt project website

The published web site will be available to the broadest public and a report on its contents and performance will be delivered to the Commission The project website will be the leading information resource concerning the Project and relevant activities The website will be regularly updated in order to reflect actual Project activities and publishable achievements

Questionnaire on the potential commercial impact of our research

This questionnaire will be sent to various potential business partners with the aim of revealing their interest in collaborating on commercialization of our products

Press and public releases, posters

Report will be provided to the Commission on all promotional materials booklets leaflets posters targeting individual stakeholder groups eg companies public authorities health professionals health care providers investors professional associations but also the scientific community universities and research institutes abroad international partner institutions mass media in order to communicate information on the Project and its commercially or socially plausible outcomes more effectively Thus raising the public as well as professional commercial awareness

Report on the Evolution of the publications in high impact journals in the relevant research fields

Introduction of the peer reviewed publications of the coordinating institution published during the three years preceding the start of the project into Continuous reporting tool on the Funding and tenders portal

Publications

Cytotoxicity Study and Influence of SBA-15 Surface Polarity and pH on Adsorption and Release Properties of Anticancer Agent Pemetrexed

Auteurs: Almáši, M.; Beňová, E.; Zeleňák, V.; Madaj, B.; Huntošová, V.; Brus, J.; Urbanová, M.; Bednarčík, J.; Hornbecq, V.
Publié dans: Materials Science and Engineering: C, Numéro 109, 2020, Page(s) 110552, ISSN 0928-4931
Éditeur: Elsevier BV
DOI: 10.1016/j.msec.2019.110552

Thermodynamic characterization of ferryl intermediates of bovine cytochrome c oxidase

Auteurs: Tomková, A.; Sztachová, T.; Fabián, M.; Jancura, D.
Publié dans: Biochimica et Biophysica Acta (BBA) - Bioenergetics, Numéro 1863 Supplement, 2022, Page(s) 148680 -27; S3.P10, ISSN 0005-2728
Éditeur: Elsevier BV
DOI: 10.1016/j.bbabio.2022.148680

Measurements of the optical coefficients of the protoporphyrin IX endogenously producing yeast-based model in the visible and NIR

Auteurs: Joniová, J.; Kažiková, V.; Gerelli, E.; Bánó, G.; Wagnières, G.
Publié dans: Journal of Biomedical Optics, Numéro 23(07), 2018, Page(s) 075001, ISSN 1083-3668
Éditeur: S P I E - International Society for Optical Engineering
DOI: 10.1117/1.jbo.23.7.075001

Specialized Craniofacial Anatomy of a Titanosaurian Embryo from Argentina

Auteurs: Kundrát, M.; Coria, R.A.; Manning, T.W.; Snitting, D.; Chiappe, L.M.; Nudds, J.; Ahlberg, P.E.
Publié dans: Current Biology, Numéro 30(21), 2020, Page(s) 4263-4269, ISSN 0960-9822
Éditeur: Cell Press
DOI: 10.1016/j.cub.2020.07.091

Conformational properties od LOV2 domain and its C450A variant within broad pH region

Auteurs: Petrenčáková, M.; Varhač, R.; Kožár, T.; Nemergut, M.; Jancura, D.; Schwer, M.S.; Sedlák, E.
Publié dans: Biophysical Chemistry, Numéro 259, 2020, Page(s) 106337, ISSN 0301-4622
Éditeur: Elsevier BV
DOI: 10.1016/j.bpc.2020.106337

Intelligent framework for radio access network design

Auteurs: Maksymyuk, T.; Šlapak, E.; Bugár, G.; Horváth, D.; Gazda, J.
Publié dans: Wireless Networks, Numéro 26(1), 2020, Page(s) 759-774, ISSN 1022-0038
Éditeur: Baltzer Science Publishers B.V.
DOI: 10.1007/s11276-019-02172-7

Inner tooth morphology of Homo erectus from Zhoukoudian. New evidence from an old collection housed at Uppsala University, Sweden

Auteurs: Zanolli, C.; Pan, L.; Dumoncel, J.; Kullmer, O.; Kundrát, M.; Liu, W.; Macchiarelli, R.; Mancini, L.; Schrenk, F.; Tuniz, C.
Publié dans: Journal of Human Evolution, Numéro 116, 2018, Page(s) 1-13, ISSN 0047-2484
Éditeur: Academic Press
DOI: 10.1016/j.jhevol.2017.11.002

In silico implementation of evolutionary paradigm in therapy design: Towards anti-cancer therapy as Darwinian process

Auteurs: Brutovsky, B.; Horvath, D.
Publié dans: Journal of Theoretical Biology, Numéro 485, 2020, Page(s) 110038, ISSN 0022-5193
Éditeur: Academic Press
DOI: 10.1016/j.jtbi.2019.110038

Aggregation mechanism and branched 3D morphologies of pathological human light chain proteins under reducing conditions

Auteurs: Džupponová, V.; Žoldák, G.
Publié dans: Colloids and Surfaces B: Biointerfaces, Numéro 221, 2023, Page(s) 112983, ISSN 0927-7765
Éditeur: Elsevier BV
DOI: 10.1016/j.colsurfb.2022.112983

Modulation of the electron-proton coupling at cytochrome a by the ligation of the oxidized catalytic center in bovine cytochrome c oxidase

Auteurs: Kopcova, K.; Mikulova, L.; Pechova, I.; Sztachova, T.; Cizmar, E.; Jancura, D.; Fabian, M.
Publié dans: Biochimica et Biophysica Acta (BBA) - Bioenergetics, Numéro 1861(9), 2020, Page(s) 148237, ISSN 0005-2728
Éditeur: Elsevier BV
DOI: 10.1016/j.bbabio.2020.148237

Ultraviolet light illuminates the avian nature of the Berlin Archaeopteryx skeleton

Auteurs: Schwartz, D.; Kundrát, M.; Tischlinger, H.; Dyke, G.; Carney, R.M.
Publié dans: Scientific Reports, Numéro 9(1), 2019, Page(s) 6518, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-019-42823-5

Searching for combination therapy by clustering methods: Stimulation of PKC in Golgi apparatus combined with hypericin induced PDT

Auteurs: Lenkavska, L.; Tomkova, S.; Horvath, D.; Huntosova, V.
Publié dans: Photodiagnosis and Photodynamic Therapy, Numéro 31, 2020, Page(s) 101813, ISSN 1572-1000
Éditeur: Elsevier BV
DOI: 10.1016/j.pdpdt.2020.101813

Phosphorescence Kinetics of Singlet Oxygen Produced by Photosensitization in Spherical Nanoparticles. Part II. The Case of Hypericin-Loaded Low-Density Lipoprotein Particles

Auteurs: Datta, S.; Hovan, A.; Jutková, A.; Kruglik, S.G.; Jancura, D.; Miskovsky, P.; Bánó, G.
Publié dans: The Journal of Physical Chemistry B, Numéro 122(20), 2018, Page(s) 5154-5160, ISSN 1520-6106
Éditeur: American Chemical Society
DOI: 10.1021/acs.jpcb.8b00659

Excitation of triplet states of hypericin in water mediated by hydrotropic cromolyn sodium salt

Auteurs: Keša, P.; Jancura, D.; Kudláčová, J.; Valušová, E.; Antalík, M.
Publié dans: Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, Numéro 193, 2018, Page(s) 185-191, ISSN 1386-1425
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.saa.2017.12.004

Photoinduced damage of AsLOV2 domain is accompanied by increased singlet oxygen production due to flavin dissociation

Auteurs: Petrenčáková, M.; Filandr, F.; Hovan, A.; Yassaghi, G.; Man, P.; Kožár, T.; Schwer, M.S.; Jancura, D.; Plückthun, A.; Novák, P.; Miškovský, P.; Bánó, G.; Sedlák, E.
Publié dans: Scientific Reports, Numéro 10(1), 2020, Page(s) 4119, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-020-60861-2

Techno-economic framework for dynamic operator selection in a multi-tier hetergeneous network

Auteurs: Bugár, G.; Vološin, M.; Maksymyuk, T.; Zausinová, J.; Gazda, V.; Horváth, D.; Gazda, J.
Publié dans: Ad Hoc Networks, Numéro 97, 2020, Page(s) 102007, ISSN 1570-8705
Éditeur: Elsevier BV
DOI: 10.1016/j.adhoc.2019.102007

Autophagy and Apoptosis Induced in U87 MG Glioblastoma Cells by Hypericin-Mediated Photodynamic Therapy Can Be Photobiomodulated with 808 nm Light

Auteurs: Pevna, V.; Wagnieres, G.; Huntosova, V.
Publié dans: Biomedicines, Numéro 9, monthly, 2021, Page(s) 1-17, ISSN 2227-9059
Éditeur: mdpi
DOI: 10.3390/biomedicines9111703

Hypericin can cross barriers in the chicken’s chorioallantoic membrane model when delivered in low-density lipoproteins

Auteurs: Blascakova, L.; Horvath, D.; Belej, D.; Wagnieres, G.; Miskovsky, P.; Jancura, D.; Huntosova, V.
Publié dans: Photodiagnosis and Photodynamic Therapy, Numéro 23, 2018, Page(s) 306-313, ISSN 1572-1000
Éditeur: Elsevier BV
DOI: 10.1016/j.pdpdt.2018.07.009

Hofmeister effect on catalytic properties of chymotrypsin is substrate-dependent

Auteurs: Dušeková, E.; Garajová, K.; Yavaşer, R.; Varhač, R.; Sedlák, E.
Publié dans: Biophysical Chemistry, Numéro 243, 2018, Page(s) 8-16, ISSN 0301-4622
Éditeur: Elsevier BV
DOI: 10.1016/j.bpc.2018.10.002

Explanation of inconsistencies in the determination of human serum albumin thermal stability

Auteurs: Nemergut, Michal; Sedláková, Dagmar; Fabriciová, Gabriela; Belej, Dominik; Jancura, Daniel; Sedlák, Erik
Publié dans: International Journal of Biological Macromolecules, Numéro 232, 2023, Page(s) 123379, ISSN 0141-8130
Éditeur: Elsevier BV
DOI: 10.1016/j.ijbiomac.2023.123379

Encapsulation of anticancer drug curcumin and co-loading with photosensitizer hypericin into lipoproteins investigated by fluorescence resonance energy transfer

Auteurs: Jutkova, A.M.; Chorvat, D.; Miskovsky, P.; Jancura, D.; Datta, S.
Publié dans: International Journal of Pharmaceutics, Numéro 564, 2019, Page(s) 369-378, ISSN 0378-5173
Éditeur: Elsevier BV
DOI: 10.1016/j.ijpharm.2019.04.062

Specific anion effect on properties of HRV 3C protease

Auteurs: Eva Dušeková; Martin Berta; Dagmar Sedláková; David Řeha; Veronika Dzurillová; Anastasiia Shaposhnikova; Fatemeh Fadaei; Mária Tomková; Babak Minofar; Erik Sedlák
Publié dans: Biophysical Chemistry, Numéro 287, 2022, Page(s) 106825, ISSN 0301-4622
Éditeur: Elsevier BV
DOI: 10.1016/j.bpc.2022.106825

Toward understanding of the role of reversibility of phenotypic switching in the evolution of resistance to therapy

Auteurs: Horvath, D.; Brutovsky, B.
Publié dans: Physics Letters A, Numéro 382(24), 2018, Page(s) 1586-1600, ISSN 0375-9601
Éditeur: Elsevier BV
DOI: 10.1016/j.physleta.2018.03.052

Adsorption properties, the pH-sensitive release of 5-fluorouracil and cytotoxicity studies of mesoporous silica drug delivery matrix

Auteurs: Beňová, E.; Bergé-Lefranc, D.; Zeleňák, V.; Almáši, M.; Huntošová, V.; Hornebecq, V.
Publié dans: Applied Surface Science, Numéro 504, 2020, Page(s) 144028, ISSN 0169-4332
Éditeur: Elsevier BV
DOI: 10.1016/j.apsusc.2019.144028

Unsupervised Learning Algorithm for Intelligent Coverage Planning and Performance Optimization of Multitier Heterogeneous Network

Auteurs: Gazda, J.; Šlapak, E.; Bugár, G.; Horváth, D.; Maksymyuk, T.; Jo, M.
Publié dans: IEEE Access, Numéro 6, 2018, Page(s) 39807-39819, ISSN 2169-3536
Éditeur: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2018.2847609

Nanomedical Relevance of the Intermolecular Interaction Dynamics—Examples from Lysozymes and Insulins

Auteurs: Zhang, R.; Zhang, N.; Mohri, M.; Wu, L.; Eckert, T.; Krylov, V.B.; Antosova, A.; Ponikova, S.; Bednarikova, Z.; Markart, P.; Günther, A.; Norden, B.; Billeter, M.; Schauer, R.; Scheidig, A.J.; Ratha, B.N.; Bhunia, A.; Hesse, K.; Enani, M.A.; Steunmeyer, J.; Petridis, A.K.; Kozar, T.; Gazova, Z.; Nifantiev, N.E.; Siebert; H.Ch.
Publié dans: ACS Omega, Numéro 4(2), 2019, Page(s) 4206-4220, ISSN 2470-1343
Éditeur: American Chemical Society
DOI: 10.1021/acsomega.8b02471

Importance of Hypericin-Bcl2 interactions for biological effects at subcellular levels

Auteurs: Stroffekova, K.; Tomkova, S.; Huntosova, V.; Kozar, T.
Publié dans: Photodiagnosis and Photodynamic Therapy, Numéro 28, 2019, Page(s) 38-52, ISSN 1572-1000
Éditeur: Elsevier BV
DOI: 10.1016/j.pdpdt.2019.08.016

Allosteric Inter-Domain Contacts in Bacterial Hsp70 Are Located in Regions That Avoid Insertion and Deletion Events

Auteurs: Gala Michal; Pristaš Peter; Žoldák Gabriel
Publié dans: International Journal of Molecular Sciences, Numéro 23(5), 2022, Page(s) 2788, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23052788

An Intermediate Incubation Period and Primitive Brooding in a Theropod Dinosaur

Auteurs: Varricchio, D.J.; Kundrát, M.; Hogan, J.
Publié dans: Scientific Reports, Numéro 8(1), 2018, Page(s) 12454, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-018-30085-6

A new conceptual framework for the therapy by optimized multidimensional pulses of therapeutic activity. The case of multiple myeloma model

Auteurs: Horvath, D.; Brutovsky, B.
Publié dans: Journal of Theoretical Biology, Numéro 454, 2018, Page(s) 292-309, ISSN 0022-5193
Éditeur: Academic Press
DOI: 10.1016/j.jtbi.2018.06.015

Blockchain-Empowered Framework for Decentralized Network Management in 6G

Auteurs: Maksymyuk, T.; Gazda, J.; Volosin, M.; Bugar, G.; Horvath, D.; Klymash, M.; Dohler, M.
Publié dans: IEEE Communications Magazine, Numéro 58(9), 2020, Page(s) 86-92, ISSN 0163-6804
Éditeur: Institute of Electrical and Electronics Engineers
DOI: 10.1109/mcom.001.2000175

Evolutionary disparity in the endoneurocranial configuration between small and gigantic tyrannosauroids

Auteurs: Kundrát, M.; Xu, X.; Hančová, M.; Gajdoš, A.; Guo, Y.; Chen, D.
Publié dans: Historical Biology, Numéro 32(5), 2020, Page(s) 620-634, ISSN 0891-2963
Éditeur: Taylor & Francis
DOI: 10.1080/08912963.2018.1518442

Purification of MBP fusion proteins using engineered DARPinaffinity matrix

Auteurs: Nemergut, M.; Skrabana, R.; Berta, M.; Plückthun, A.; Sedlak, E.
Publié dans: International Journal of Biological Macromolecules: Structure, Function and Interactions, Numéro 187, 2021, Page(s) 105-112, ISSN 0141-8130
Éditeur: Elsevier BV
DOI: 10.1016/j.ijbiomac.2021.07.117

Structural analysis of the neuropeptide substance P by using vibrational spectroscopy

Auteurs: Jurasekova, Z.; Garcia-Leis, A.; Sanchez-Cortes, S.; Tinti, A.; Torreggiani, A.
Publié dans: Analytical and Bioanalytical Chemistry, Numéro 411(28), 2019, Page(s) 7419-7430, ISSN 1618-2642
Éditeur: Springer Verlag
DOI: 10.1007/s00216-019-02097-2

Modulation of global stability, ligand binding and catalytic properties of trypsin by anions

Auteurs: Dušeková Eva, Garajová Katarína, Yavaşer Rukiye, Tomková Mária, Sedláková Dagmar, Dzurillová Veronika, Kulik Natalia, Fadaei Fatemeh, Shaposhnikova Anastasiia, Minofar Babak, Sedlák Erik
Publié dans: Biophysical Chemistry, Numéro 288, 2022, Page(s) 106856, ISSN 0301-4622
Éditeur: Elsevier BV
DOI: 10.1016/j.bpc.2022.106856

Structural Lesions of Proteins Connected to Lipid Membrane Damages Caused by Radical Stress: Assessment by Biomimetic Systems and Raman Spectroscopy

Auteurs: Torreggiani, A.; Tinti, A.; Jurasekova, Z.; Capdevila, M.; Saracino, M.; Di Foggia, M.
Publié dans: Biomolecules, Numéro 9(12), 2019, Page(s) 794, ISSN 2218-273X
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/biom9120794

Advances in the Study of Cerium Oxide Nanoparticles: New Insights into Antiamyloidogenic Activity

Auteurs: Siposova, K.; Huntosova, V.; Shlapa, Y.; Lenkavska, L.; Macajova, M.; Belous, A.; Musatov, A.
Publié dans: ACS Applied Bio Materials, Numéro 2(5), 2019, Page(s) 1884-1806, ISSN 2576-6422
Éditeur: American Chemical Society
DOI: 10.1021/acsabm.8b00816

SlyD Accelerates trans-to-cis Prolyl Isomerization in a Mechanosignaling Protein under Load

Auteurs: Sengupta, A.; Rognoni, L.E.; Merkel, U.; Žoldák, G.; Rief, M.
Publié dans: The Journal of Physical Chemistry B: Biophysical Chemistry, Biomaterials, Liquids, and Soft Matter, Numéro 125(31), 2021, Page(s) 8712–8721, ISSN 1520-5207
Éditeur: American Chemical Society
DOI: 10.1021/acs.jpcb.1c03648

A polar dinosaur feather assemblage from Australia

Auteurs: Kundrát, M.; Rich, T.H.; Lindgren, J.; Sjövall, P.; Vickers-Rich, P.; Chiappe, L.M.; Kear, B.P.
Publié dans: Gondwana Research, Numéro 80, 2020, Page(s) 1-11, ISSN 1342-937X
Éditeur: International Association for Godwana Research
DOI: 10.1016/j.gr.2019.10.004

The first specimen of Archaeopteryx from the Upper Jurassic Mörnsheim Formation of Germany

Auteurs: Kundrát, M.; Nudds, J.; Kear, B.P.; Lü, J.; Ahlberg, P.
Publié dans: Historical Biology, Numéro 31(1), 2019, Page(s) 3-63, ISSN 0891-2963
Éditeur: Taylor & Francis
DOI: 10.1080/08912963.2018.1518443

Modeling and analysis of self-organizing UAV-assisted mobile networks with dynamic in-demand deployment

Auteurs: Horvath, D.; Gazda, J.; Slapak, E.; Maksymyuk, T.
Publié dans: Entropy, Numéro 21, 2019, Page(s) 1077, ISSN 1099-4300
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/e21111077

Unravelling the Excellent Chemical Stability and Bioavailability of Solvent Responsive Curcumin-Loaded 2-Ethyl-2-oxazoline-grad-2-(4-dodecyloxyphenyl)-2-oxazoline Copolymer Nanoparticles for Drug Delivery

Auteurs: Datta, S.; Jutková, A.; Šrámková, P.; Lenkavská, L.; Huntošová, V.; Chorvát, D.; Miškovský, P.; Jancura, D.; Kronek, J.
Publié dans: Biomacromolecules, Numéro 19(7), 2018, Page(s) 2459-2471, ISSN 1525-7797
Éditeur: American Chemical Society
DOI: 10.1021/acs.biomac.8b00057

Universal platform for the generation of thermostabilized GPCRs that crystallize in LCP

Auteurs: Jendrik Schöppe 1,2, Janosch Ehrenmann 1,3, Yann Waltenspühl 1 and Andreas Plückthun
Publié dans: NATURE PROTOCOLS, 2022, ISSN 0967-0912
Éditeur: Institute of Materials
DOI: 10.1038/s41596-021-00660-9

Benefits of hypericin transport and delivery by low- and high-density lipoproteins to cancer cells: From in vitro to ex ovo

Auteurs: Lenkavska, L.; Blascakova, L.; Jurasekova, Z.; Macajova, M.; Bilcik, B.; Cavarga, I.; Miskovsky, P.; Huntosova, V.
Publié dans: Photodiagnosis and Photodynamic Therapy, Numéro 25, 2019, Page(s) 214-224, ISSN 1572-1000
Éditeur: Elsevier BV
DOI: 10.1016/j.pdpdt.2018.12.013

Isothermal titration calorimetric study of the formation and decay of the p-form of cytochrome c oxidase

Auteurs: Jancura, D.; Pechová. I.; Mikulová, Ľ.; Stupák, M.; Fabián, M.
Publié dans: Biochimica et Biophysica Acta (BBA) - Bioenergetics, Numéro 1863 Supplement, 2022, Page(s) 148678 - 26; S3.P8, ISSN 0005-2728
Éditeur: Elsevier BV
DOI: 10.1016/j.bbabio.2022.148678

Phosphorescence Kinetics of Singlet Oxygen Produced by Photosensitization in Spherical Nanoparticles. Part I. Theory

Auteurs: Hovan, A.; Datta, S.; Kruglik, S.G.; Jancura, D.; Miskovsky, P.; Bánó, G.
Publié dans: The Journal of Physical Chemistry B, Numéro 122(20), 2018, Page(s) 5147-5153, ISSN 1520-6106
Éditeur: American Chemical Society
DOI: 10.1021/acs.jpcb.8b00658

An Active, Ligand-Responsive Pulling Geometry Reports on Internal Signaling between Subdomains of the DnaK Nucleotide-Binding Domain in Single-Molecule Mechanical Experiments

Auteurs: Meinhold, S.; Bauer, D.; Huber, J.; Merkel, U.; Weißl, A.; Žoldák, G.; Rief, M.
Publié dans: Biochemistry, Numéro 58(47), 2019, Page(s) 4744-4750, ISSN 0006-2960
Éditeur: American Chemical Society
DOI: 10.1021/acs.biochem.9b00155

Photobiomodulation and photodynamic therapy-induced switching of autophagy and apoptosis in human dermal fibroblasts

Auteurs: Pevna Viktoria, Horvath Denis, Wagnieres Georges, Huntosova Veronika
Publié dans: Journal of Photochemistry and Photobiology B: Biology, Numéro 234, 2022, Page(s) 112539, ISSN 1011-1344
Éditeur: Elsevier BV
DOI: 10.1016/j.jphotobiol.2022.112539

A kinetic coupling between protein unfolding and aggregation controls time-dependent solubility of the human myeloma antibody light chain

Auteurs: Džupponová, V.; Huntošová, V.; Žoldák, G.
Publié dans: Protein Science, Numéro 29(12), 2020, Page(s) 2408-2421, ISSN 0961-8368
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1002/pro.3968

Spheroidal Model of SKBR3 and U87MG Cancer Cells for Live Imaging of Caspase-3 during Apoptosis Induced by Singlet Oxygen in Photodynamic Therapy

Auteurs: Pevná, V.; Máčajová, M.; Hovan, A.; Bánó, G.; Meta, M.; Bilčík, B.; Palková, J.; Huntosova, V.
Publié dans: Biomedicines, Numéro 10(9), 2022, Page(s) 2141, ISSN 2227-9059
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/biomedicines10092141

Bone tissue histology of the Early Cretaceous bird Yanornis: evidence for a diphyletic origin of modern avian growth strategies within Ornithuromorpha

Auteurs: Wang, J.; Hao, X.; Kundrát, M.; Liu, Z.; Uesugi, K.; Jurašeková, Z.; Guo, B.; Hoshino, M.; Li, Y.; Monfroy, Q.; Zhou, B.; Fabriciová, G.; Kang, A.; Wang, M.; Si, Y.; Gao, J.; Xu, G.; Li, Z.
Publié dans: Historical Biology, Numéro 32(10), 2020, Page(s) 1422-1434, ISSN 0891-2963
Éditeur: Taylor & Francis
DOI: 10.1080/08912963.2019.1593405

Inhibition of amyloid fibril formation and disassembly of pre-formed fibrils by natural polyphenol rottlerin

Auteurs: Siposova, K.; Kozar, T.; Huntosova, V.; Tomkova, S.; Musatov, A.
Publié dans: Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Numéro 1867(3), 2019, Page(s) 259-274, ISSN 1570-9639
Éditeur: Elsevier BV
DOI: 10.1016/j.bbapap.2018.10.002

Electrochemically deposited silver detection substrate for surface-enhanced Raman spectroscopy cancer diagnostics.

Auteurs: Orságová Králová, Z.; Oriňak, A.; Oriňaková, R.; Petruš, O.; Macko, J.; Radoňak, J.; Sukovská Lakyová, L.; Jurašeková, Z.; Smith, R.M.; Strečková, M.; Koval, K.
Publié dans: Journal of Biomedical Optics, Numéro 23(07), 2018, Page(s) 075002, ISSN 1083-3668
Éditeur: S P I E - International Society for Optical Engineering
DOI: 10.1117/1.jbo.23.7.075002

Single-molecule mechanical studies of chaperones and their clients

Auteurs: Rief, Matthias; Žoldák, Gabriel
Publié dans: Biophysics Reviews, Numéro 3, 2022, Page(s) 041301, ISSN 2688-4089
Éditeur: AIP Publishing
DOI: 10.1063/5.0098033

Bending dynamics of viscoelastic photopolymer nanowires

Auteurs: Kubacková, J.; Iványi, GT.; Kažiková, V.; Strejčková, A.; Hovan, A.; Žoldák, G.; Vizsnyiczai, G.; Kelemen, L.; Tomori, Z.; Bánó, G.
Publié dans: Applied Physics Letters, Numéro 117(1), 2020, Page(s) 013707, ISSN 0003-6951
Éditeur: American Institute of Physics
DOI: 10.1063/5.0014662

Destabilization effect of imidazolium cation-Hofmeister anion salts on cytochrome c

Auteurs: Garajová, K.; Sedláková, D.; Berta, M.; Gazova, Z.; Sedlák, E.
Publié dans: International Journal of Biological Macromolecules, Numéro 164, 2020, Page(s) 3808-3813, ISSN 0141-8130
Éditeur: Elsevier BV
DOI: 10.1016/j.ijbiomac.2020.09.009

Peroxidase activity of cytochrome c in its compact state depends on dynamics of the heme region

Auteurs: Tomášková, N.; Varhač, R.; Lysáková, V.; Musatov, A.; Sedlák, E.
Publié dans: Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Numéro 1866(11), 2018, Page(s) 1073-1083, ISSN 1570-9639
Éditeur: Elsevier BV
DOI: 10.1016/j.bbapap.2018.09.003

Synergistic Effects of Copper Sites on Apparent Stability of Multicopper Oxidase, Fet3p

Auteurs: Sedlák, E.; Žoldák, G.; Wittung-Stafshede, P.
Publié dans: International Journal of Molecular Sciences, Numéro 19(1), 2018, Page(s) 269, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms19010269

Modification of the kinetic stability of immunoglobulin G by solvent additives

Auteurs: Schaefer, J.V.; Sedlák, E.; Kast, F.; Nemergut, M.; Plückthun, A.
Publié dans: MAbs, Numéro 10(4), 2018, Page(s) 607-623, ISSN 1942-0862
Éditeur: Taylor and Francis Online
DOI: 10.1080/19420862.2018.1450126

Dual effect of non-ionic detergent Triton X-100 on insulin amyloid formation

Auteurs: Siposova, K.; Sedlak, E.; Kozar, E.; Nemergut, M.; Musatov, A.
Publié dans: Colloids and Surfaces B: Biointerfaces, Numéro 173, 2019, Page(s) 709-718, ISSN 0927-7765
Éditeur: Elsevier BV
DOI: 10.1016/j.colsurfb.2018.10.039

Protein Nanomechanics

Auteurs: Žoldák Gabriel
Publié dans: Nanomaterials, Numéro 12(19), 2022, Page(s) 3524, ISSN 2079-4991
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/nano12193524

Response of Heme Symmetry to the Redox State of Bovine Cytochrome c Oxidase

Auteurs: Kopcova, K.; Blascakova, L.; Kozar, T.; Jancura, D.; Fabian, M.
Publié dans: Biochemistry, Numéro 57(28), 2018, Page(s) 4105-4113, ISSN 0006-2960
Éditeur: American Chemical Society
DOI: 10.1021/acs.biochem.8b00459

Interpretation of Single-Molecule Force Experiments on Proteins Using Normal Mode Analysis

Auteurs: Bauer, J., Žoldák, G.
Publié dans: Nanomaterials, Numéro 11(11), 2021, Page(s) 1-19, ISSN 2079-4991
Éditeur: mdpi
DOI: 10.3390/nano11112795

Structural basis for the activation and ligand recognition of the human oxytocin receptor

Auteurs: Yann Waltenspühl, Janosch Ehrenmann, Santiago Vacca, Cristian Thom, Ohad Medalia & Andreas Plückthun
Publié dans: Nature Communications, 2022, ISSN 0967-0912
Éditeur: Institute of Materials
DOI: 10.1038/s41467-022-31325-0

In vitro identification of mitochondrial oxidative stress production by time-resolved fluorescence imaging of glioma cells

Auteurs: Tomkova, S.; Misuth, M.; Lenkavska, L.; Miskovsky, P.; Huntosova, V.
Publié dans: Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Numéro 1865(4), 2018, Page(s) 616-628, ISSN 0167-4889
Éditeur: Elsevier BV
DOI: 10.1016/j.bbamcr.2018.01.012

Forearm bone histology of the small theropod Daliansaurus liaoningensis (Paraves: Troodontidae) from the Yixian Formation, Liaoning, China

Auteurs: Shen, C.; Lü, J.; Gao, Ch.; Hoshino, M.; Uesugi, K.; Kundrát, M.
Publié dans: Historical Biology, Numéro 31(2), 2019, Page(s) 253-261, ISSN 0891-2963
Éditeur: Taylor & Francis
DOI: 10.1080/08912963.2017.1360296

HNK‐1 in Morphological Study of Development of the Cardiac Conduction System in Selected Groups of SauropsidaThe Anatomical Record [online]. 2018, 302(1), 69-82 [cit. 2022-06-29]. ISSN . Dostupné z: doi:10.1002/ar.23925

Auteurs: Kvasilova, A.; Gregorovicova, M.; Kundrat, M.; Sedmera, D.
Publié dans: The Anatomical Record, Numéro 302(1), 2019, Page(s) 69-82, ISSN 1932-8486
Éditeur: John Wiley & Sons Inc.
DOI: 10.1002/ar.23925

Ion-specific protein/water interface determines the Hofmeister effect on the kinetic stability of glucose oxidase

Auteurs: Sedlák, E.; Sedláková, D.; Marek, J.; Hančár, J.; Garajová, K.; Žoldák, G.
Publié dans: The Journal of Physical Chemistry B, Numéro 123(38), 2019, Page(s) 7965-7973, ISSN 1520-6106
Éditeur: American Chemical Society
DOI: 10.1021/acs.jpcb.9b05195

The Interplay among Subunit Composition, Cardiolipin Content, and Aggregation State of Bovine Heart Cytochrome c Oxidase

Auteurs: Sedlák, E.; Kožár, T.; Musatov, A.
Publié dans: Cells, Numéro 9(12), 2020, Page(s) 2588, ISSN 2073-4409
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cells9122588

Crystal structure of the α1B-adrenergic receptor reveals molecular determinants of selective ligandrecognition

Auteurs: Mattia Deluigi 1, Lena Morstein 1,10, Matthias Schuster2,10, Christoph Klenk 1, Lisa Merklinger1,7, Riley R. Cridge3, Lazarus A. de Zhang3,4, Alexander Klipp 1,8, Santiago Vacca 1, Tasneem M. Vaid5, Peer R. E. Mittl 1, Pascal Egloff 1, Stefanie A. Eberle1,9, Oliver Zerbe 2, David K. Chalmers 6, Daniel J. Scott3,4✉ & Andreas Plückthun
Publié dans: nature communications, 2022, ISSN 0967-0912
Éditeur: Institute of Materials
DOI: 10.1038/s41467-021-27911-3

A new jeholornithiform exhibits the earliest appearance of the fused sternum and pelvis in the evolution of avialan dinosaurs

Auteurs: Wang, X.; Huang, J.; Kundrát, M.; Cau, A.; Liu, X.; Wang, Y.; Ju, S.
Publié dans: Journal of Asian Earth Sciences, Numéro 199, 2020, Page(s) 104401, ISSN 1367-9120
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.jseaes.2020.104401

A folding nucleus and minimal ATP binding domain of Hsp70 identified by single-molecule force spectroscopy

Auteurs: Bauer, D.; Meinhold, S.; Jakob, R.P.; Stigler, J.; Merkel, U.; Maier, T.; Rief, M.; Žoldák, G.
Publié dans: Proceedings of the National Academy of Sciences, Numéro 115(18), 2018, Page(s) 4666-4671, ISSN 0027-8424
Éditeur: National Academy of Sciences
DOI: 10.1073/pnas.1716899115

A Vaccinia-based system for directed evolution of GPCRs in mammalian cells

Auteurs: Christoph Klenk 1 , Maria Scrivens2, Anina Niederer 1, Shuying Shi2, Loretta Mueller2, Elaine Gersz 2, Maurice Zauderer 2, Ernest S. Smith2, Ralf Strohner3 & Andreas Plückthun
Publié dans: nature communications, 2023, ISSN 0967-0912
Éditeur: Institute of Materials
DOI: 10.1038/s41467-023-37191-8

Entropy-Based Strategies for Rapid Pre-Processing and Classification of Time Series Data from Single-Molecule Force ExperimentsEntropy [online]. 2020, 22(6) [cit. 2022-06-29]. ISSN 0. Dostupné z: doi:10.3390/e22060701

Auteurs: Horvath, D.; Žoldák, G.
Publié dans: Entropy, Numéro 22(6), 2020, Page(s) 701, ISSN 1099-4300
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/e22060701

D2.1 Protein stability and folding proceedings

Auteurs: Žoldák, G.; Sengupta, A.
Publié dans: Numéro D10, 2022, Page(s) 1-20
Éditeur: UPJŠ in Košice
DOI: 10.5281/zenodo.7130648

Self-assembly of recombinant spider silk protein eADF4(C16) triggered by pH

Auteurs: Talafová, V.; Žoldák, G.; Humenik, M.; Scheibel, T.; Sedlák, E.
Publié dans: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 198, ISSN 0175-7571
Éditeur: Springer-Nature

D3.3 Proceedings from the Summer school on biophotonics

Auteurs: Bánó, G.; Huntošová, V.; Jurašeková, Z.
Publié dans: Deliverables - CasProt project, Numéro D16, 2023, Page(s) 1-73
Éditeur: UPJŠ in Košice
DOI: 10.5281/zenodo.8202367

D3.2 Proceedings from the Summer school on directed evolution of proteins

Auteurs: Tomková, M.
Publié dans: Numéro D15, 2023, Page(s) 1-44
Éditeur: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.8172087

Development of haloalkane dehalogenases by ribosome display

Auteurs: Dzurillová, V.; Berta, M.; Tomková, M.; Sedlák, E.
Publié dans: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 122, ISSN 0175-7571
Éditeur: Springer-Nature

Viscosity measurements using flexible microstructures.

Auteurs: Kubackova, J.; Slabý, C.; Horvath, D.; Hovan, A.; Iványi, G. T.; Vizsnyiczai, G.; Kelemen, L.; Strejčková, A.; Tomori, Z.; Bánó, G.
Publié dans: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) L20
Éditeur: Regional Biophysics Conference

D2.4 Workshop proceedings - directed evolution of proteins

Auteurs: Sedlák, E.
Publié dans: Numéro D13, 2023, Page(s) 1-54
Éditeur: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.8192733

The Brownian motion of flexible microstructures – towards viscosity measurements in microfluidic channels

Auteurs: Slabý, C.; Kubacková, J.; Hovan, A.; Miškovský, P.; Tomori, Z.; Bánó, G.
Publié dans: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 143, ISSN 0175-7571
Éditeur: Springer-Nature

Time-resolved detection of oxidative stress level in cancer cells

Auteurs: Huntošová, V.
Publié dans: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) L52
Éditeur: Regional Biophysics Conference

Evolution of staphylokinase´s binding affinity by ribosome display technology

Auteurs: Tomková, M.; Dzurillová, V.; Sedlák, E.
Publié dans: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P64
Éditeur: Regional Biophysics Conference

Role the conformational and colloidal stability on time-dependence solubility of human myeloma antibody λ-light chain

Auteurs: Džupponová, V.; Žoldák, G.
Publié dans: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 122, ISSN 0175-7571
Éditeur: Springer-Nature

Self-assembly kinetic model of recombinant spider silk protein EADF4(C16)

Auteurs: Talafová, V.; Humeník, M.; Žoldák, G.; Scheibel, T.; Sedlák, E.
Publié dans: "26. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology with cooperation of Austrian and German Biochemical Section: supported by the FEBS3+ Meeting programme: ""Life is Biochemistry, Biochemistry is Life"": programme and abstract book", 2021, Page(s) 188, ISBN 9788090777910
Éditeur: Venice Praha, s.r.o.

D5.1 Guide for preparation administration and management of European project for UPJS staff

Auteurs: Rindošová, S.; Jureková, N.
Publié dans: Deliverables - CasProt project, Numéro D23, 2023, Page(s) 1-26
Éditeur: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.7774693

SVK: Úloha disulfidových väzieb amyloidotického ľahkého reťazca IgG pri tvorbe extracelulárnych agregátov (ENG: The role of disulfide bonds of amyloidotic IgG light chain in the formation of extracellular aggregates)

Auteurs: Ďzupponová, V.; Žoldák, G.
Publié dans: Príroda len ťažko vydáva svoje tajomstvá: Zborník prác z vedeckej konferencie konanej pri príležitosti 100. výročia narodenia prof. MVDr. Michala Bartíka, DrSc., 2021, Page(s) 42-47, ISBN 9788080777241
Éditeur: University of veterinary medicine and pharmacy in Košice

Salt-dependent antibody adsorption on water/solid interfaces

Auteurs: Žoldák, G.; Džupponová, V.
Publié dans: Interfaces 2021: Book of abstracts, 2021, Page(s) 43
Éditeur: Universita di Cagliari

Designing of LOV2 protein into efficient photosensitizer

Auteurs: Felčíková, K.; Dzurillová, V.; Hovan, A.; Bánó, G.; Kožár, T.; Sedlák, E.
Publié dans: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P18
Éditeur: Regional Biophysics Conference

Development of single-molecule protein biophysics

Auteurs: Žoldák, G.
Publié dans: "Instruct-ERIC Webinar Series: Structure Meets Function - Webinar #13", 2021, Page(s) Talk 3
Éditeur: Instruct-ERIC Webinar Series: Structure Meets Function

CasProt Zenodo upload guidelines

Auteurs: Matta, Peter
Publié dans: 2022, Page(s) 1-4
Éditeur: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.6399952

HaloTag technology in directed evolution of haloalkane dehalogenase

Auteurs: Dzurillová, V.; Ambro, Ľ.; Artimovič, P.; Fecková, K.; Sedlák, E.
Publié dans: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P16
Éditeur: Regional Biophysics Conference

Hofmeister effect on catalytic efficiency and conformation of 3C protease

Auteurs: Dušeková, E.; Tomková, M.; Berta, M.; Dzurillová, V.; Sedláková, D.; Sedlák, E.
Publié dans: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 121, ISSN 0175-7571
Éditeur: Springer-Nature

Singlet oxygen production by LOV domain

Auteurs: Sedlák, E.
Publié dans: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) L35
Éditeur: Regional Biophysics Conference

D2.3 Workshop proceedings - single-molecule protein folding

Auteurs: Žoldák, G.
Publié dans: Numéro D12, 2023, Page(s) 1-22
Éditeur: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.7788038

Flavin cofactor in AsLOV2 domain as efficient singlet oxygen producer

Auteurs: Petrenčáková, M.; Filandr, F.; Hovan, A.; Man, P.; Kožár, T.; Novák, P.; Jancura, D.; Bánó, G.; Sedlák, E.
Publié dans: "26. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology with cooperation of Austrian and German Biochemical Section: supported by the FEBS3+ Meeting programme: ""Life is Biochemistry, Biochemistry is Life"": programme and abstract book.", 2021, Page(s) 61, ISBN 9788090777910
Éditeur: Venice Praha, s.r.o.

Preparation of a ribosome extract for an in vitro protein evolution through ribosome display

Auteurs: Tomková, M.; Berta, M.; Dzurillová, V.; Sedlák, E.
Publié dans: "26. Annual Congress of Czech and Slovak Societies for Biochemistry and Molecular Biology with cooperation of Austrian and German Biochemical Section: supported by the FEBS3+ Meeting programme: ""Life is Biochemistry, Biochemistry is Life"": programme and abstract book", 2021, Page(s) 181, ISBN 9788090777910
Éditeur: Venice Praha, s.r.o.

Structural in-depth analysis of iron complexes of plant gall polyphenols by optical spectroscopic techniques and DFT calculations

Auteurs: Espina, A.; Sanchez-Cortes, S.; Cañamares, M. V.; Jurašeková, Z.
Publié dans: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P29
Éditeur: Regional Biophysics Conference

Time-resolved singlet oxygen phosphorescence detection in live cell suspensions

Auteurs: Hovan, A.; Pevná, V.; Huntošová, V.; Miskovsky, P.; Bánó, G.
Publié dans: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P25
Éditeur: Regional Biophysics Conference

D2.2 Directed evolution of proteins proceedings

Auteurs: Sedlák, E.
Publié dans: Numéro D11, 2023, Page(s) 1-62
Éditeur: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.8010104

SVK: Samozostavovanie rekombinantného pavúčieho proteínu do fibríl vplyvom pH a kozmotropných iónov (ENG: Self-assembly of recombinant spider silk protein eADF4(C16) triggered by pH and cosmotropic ions)

Auteurs: Talafová, V.; Humenik, M.; Žoldák, G.; Scheibel, T.; Sedlák, E.
Publié dans: Príroda len ťažko vydáva svoje tajomstvá: Zborník prác z vedeckej konferencie konanej pri príležitosti 100. výročia narodenia prof. MVDr. Michala Bartíka, DrSc., 2021, Page(s) 83-89, ISBN 9788080777241
Éditeur: University of veterinary medicine and pharmacy in Košice

D6.4 Data management plan

Auteurs: Žoldák, G.; Pezlar, I.
Publié dans: Deliverables - CasProt project, Numéro D29, 2022, Page(s) 1-28
Éditeur: UPJŠ in Košice
DOI: 10.5281/zenodo.6555079

Thermodynamics of the formation and decay of the P-type ferryl formof cytochrome c oxidase in the reaction of the oxidized oxidase with H2O2

Auteurs: Mikulova, L.; Pechova, I.; Stupak, M.; Fabian, M.; Jancura, D.
Publié dans: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 126, ISSN 0175-7571
Éditeur: Springer-Nature
DOI: 10.1007/s00249-021-01558-w

Modification of GPCR solubility by ribosome display

Auteurs: Berta, M.; Dzurillová, V.; Tomková, M.; Sedlák, E.
Publié dans: European Biophysics Journal: with Biophysics Letters, 2021, Page(s) 121, ISSN 0175-7571
Éditeur: Springer-Nature

Single-molecule mechanics of proteins

Auteurs: Žoldák, G.
Publié dans: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) L14
Éditeur: Regional Biophysics Conference

The viscoelastic behaviour of photopolymer nanowires – experiments and modeling

Auteurs: Slabý, C.; Kubacková, J.; Horvath, D.; Hovan, A.; Iványi, G. T.; Vizsnyiczai, G.; Kelemen, L.; Žoldák, G.; Tomori, Z.; Bánó, G.
Publié dans: Regional Biophysics Conference - https://www.rbc2022.hu/i-programme.php, 2022, Page(s) P57
Éditeur: Regional Biophysics Conference

D5.2 Best practices recommendation from UZH and TUM

Auteurs: Pezlar, I.; Rindošová, S.; Jureková, N.; Jenčušová, E. Z.
Publié dans: Deliverables - CasProt project, Numéro D24, 2022, Page(s) 1-11
Éditeur: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.7575110

D3.1 Proceedings from the Summer school on protein stability and folding

Auteurs: Žoldák, G.
Publié dans: Numéro D14, 2022, Page(s) 1-73
Éditeur: UPJŠ in Košice (CasProt project)
DOI: 10.5281/zenodo.6954538

Imaging of autophagic and mitochondrial proteins in 3D spheroids of U87 MG cancer cells during photodynamice therapy mediated with hypericin

Auteurs: Pevná, V.; Tomková, S.; Huntošová, V.
Publié dans: 16th Multinational Congress on Microscopy - Book of Abstracts, Numéro LS4-P-2499, 2022, Page(s) 276-277
Éditeur: Czechoslovak Microscopy Society

Direct observation of chemo-mechanical coupling in the Hsp70 chaperone DnaK by single-molecule force experiments

Auteurs: Rief, M.; Žoldák, G.
Publié dans: Instruct Biennial Structural Biology Conference - Abstract Booklet, Numéro Poster No. 40, 2022, Page(s) 56
Éditeur: The European Research Infrastructure for Integrative Structural Biology

Mechanics and evolution of Hsp70

Auteurs: Žoldák, G.
Publié dans: 10th Slovak Biophysical Symposium - Book of Contributions, Numéro SC6, 2022, Page(s) 44, ISBN 978-80-973719-4-4
Éditeur: Slovak Biophysical Society and Biomedical Research Center Slovak Academy of Sciences
DOI: 10.5281/zenodo.6555096

Molecular mechanism of myeloma λ-type IgG light chain aggregation

Auteurs: Džupponová, V.; Žoldák, G.
Publié dans: Instruct Biennial Structural Biology Conference - Abstract Booklet, Numéro Poster No. 41, 2022, Page(s) 57
Éditeur: The European Research Infrastructure for Integrative Structural Biology

Targeted photobiomodulation of cancer cells at 808 nm may improve efficacy of photodynamic therapy

Auteurs: Pevná, V.; Tomková, S.; Huntošová, V.
Publié dans: 16th Multinational Congress on Microscopy - Book of Abstracts, Numéro LS4-P-2498, 2022, Page(s) 274-275, ISBN 978-80-11-02253-2
Éditeur: Czechoslovak Microscopy Society

Aggregation mechanism and morphologies of myelomatic human light chain

Auteurs: Džupponová, V.; Žoldák, G.
Publié dans: 10th Slovak Biophysical Symposium - Book of Contributions, Numéro SC19, 2022, Page(s) 68-69, ISBN 978-80-973719-4-4
Éditeur: Slovak Biophysical Society and Biomedical Research Center Slovak Academy of Sciences

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