Increasing scientific, technological and innovation capacity of Serbia as a Widening country in the domain of multiscale modelling and medical informatics in biomedical engineering

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Best practices for building the innovation capacity

This report will summarize effective capacity building approaches at universities in the EU region The aims are to draw lessons that will lead to opportunity to help the strengthening of knowledge framework and elearning at UKG

Materials for teaching and learning purposes

The report will focus on relevant materials including tutorials, guidelines, case studies and best practice examples in order to facilitate students’ learning and training.

State of the art in bioinformatics, imaging informatics, sensor informatics, public health informatics

The report will include the analysis of the state of the art for enabling technologies of devices and sensors databases systems signals and big data analytics It will also include machine learning artificial intelligence telemedicine Internet of Things IOT mHealth eHealth human computer interface bioinformatics sensors imaging to achieve patient specific outcome driven health care The analysed methods will be part of the integrated SGABU platform

Publications in high impact journals

List of peerreviewed publications in the field of multiscale modelling and medical informatics in biomedical engineering of the coordinating entity UKG during the three years preceding the start date of the project

Collection of successful stories

The report will present successful stories from spin-off companies in the field of multiscale modelling and medical informatics in biomedical engineering, providing guidelines and recommendations for UKG. A collection of successful stories will be printed as a brochure.

State of the art in the multiscale modelling in biomedical engineering

The report will include the analysis of the current stateoftheart of multiscale modelling to provide the basis for the SGABU platform

Project Website

A website will be created to provide a first access point for the public UKG will have the main role in creation and maintenance of project website and dissemination activities related to project promotion

Publications

Simulation of organ-on-a-chip systems

Auteurs: Filipovic, N., Nikolic, M., Sustersic, T.
Publié dans: Biomaterials for Organ and Tissue Regeneration – New Technologies and Future Prospects, 2020
Éditeur: Elsevier

Computational modeling of atherosclerosis

Auteurs: Nenad Filipovic
Publié dans: Computational Modeling in Bioengineering and Bioinformatics, 2019, Page(s) 1-39
Éditeur: Elsevier

Computational modelling of dry powder inhalers for pulmonary drug delivery

Auteurs: Sustersic, T., Filipovic, N.
Publié dans: Computational Modeling in Bioengineering and Bioinformatics, 2020
Éditeur: Elsevier

Computational analysis of abdominal aortic aneurysm before and after endovascular aneurysm repair

Auteurs: Smiljana Djorovic, Nenad Filipovic
Publié dans: Computational Modeling in Bioengineering and Bioinformatics, 2019, Page(s) 353-386
Éditeur: Elsevier

Aortic Dissection: Numerical Modeling, Virtual Surgery

Auteurs: Igor B. Saveljic, Nenad Filipovic
Publié dans: Computational Modeling in Bioengineering and Bioinformatics, 2019, Page(s) 137-178
Éditeur: Elsevier

Numerical modeling of cell separation in microfluidic chips

Auteurs: Tijana Đukić, Nenad Filipovic
Publié dans: Computational Modeling in Bioengineering and Bioinformatics, 2019, Page(s) 321-352
Éditeur: Elsevier

Lab-on-a-chip and epithelial lung cells modeling

Auteurs: Milica Nikolic, Nenad Filipovic
Publié dans: Computational Modeling in Bioengineering and Bioinformatics, 2019, Page(s) 105-135
Éditeur: Elsevier

ace Recognition Using Maxeler DataFlow, Exploring the DataFlow Supercomputing Paradigm

Auteurs: Tijana Sustersic, Aleksandra Vulovic, Nemanja Trifunovic, Ivan Milankovic, Nenad Filipovic
Publié dans: Exploring the DataFlow Supercomputing Paradigm, 2019, Page(s) 171-196
Éditeur: Springer

Computer modeling of cochlea mechanics

Auteurs: Velibor Isailovic, Nenad Filipovic
Publié dans: Computational Modeling in Bioengineering and Bioinformatics, 2019, Page(s) 289-319
Éditeur: Elsevier

The biomechanics of lower human extremities

Auteurs: Aleksandra Vulović, Nenad Filipovic
Publié dans: Computational Modeling in Bioengineering and Bioinformatics, 2019, Page(s) 179-210
Éditeur: Elsevier

Computer Modeling of Stent Deployment in the Coronary Artery Coupled with Plaque Progression

Auteurs: Nenad Filipovic, Zarko Milosevic, Igor Saveljic, Dalibor Nikolic, Milos Radovic
Publié dans: Biomaterials in Clinical Practice, 2018, Page(s) 659-693, ISBN 978-3-319-68024-8
Éditeur: Springer International Publishing
DOI: 10.1007/978-3-319-68025-5_25

A Deep Learning Model for Automatic Detection and Classification of Disc Herniation in Magnetic Resonance Images

Auteurs: T. Šušteršič, V. Ranković, V. Milovanović, V. Kovačević, L. Rasulić, N. Filipović
Publié dans: IEEE Journal of Biomedical and Health Informatics, 2022, ISSN 2168-2208
Éditeur: IEEE
DOI: 10.1109/jbhi.2022.3209585

A study on the accuracy and efficiency of the improved numerical model for stent implantation using clinical data

Auteurs: Tijana Djukic, Igor Saveljic, Gualtiero Pelosi, Oberdan Parodi, Nenad Filipovic
Publié dans: Computer Methods and Programs in Biomedicine, 2021, Page(s) 106196, ISSN 0169-2607
Éditeur: Elsevier BV
DOI: 10.1016/j.cmpb.2021.106196

Disease progression of hypertrophic cardiomyopathy: modeling using machine learning

Auteurs: M. Piculin, T. Smole, B. Zunkovic, E. Kokalj, M. Robnik-Sikonja, M. Kukar, D. I. Fotiadis, V. C. Pezoulas, N. S. Tachos, F. Barlocco, F. Mazzarotto, D. Popović, L. S. Maier, L. Velicki, I. Olivotto, G. A. MacGowan, D. G. Jakovljević, N. Filipovic, Z. Bosnic Z
Publié dans: JMIR Medical Informatics, 2022, ISSN 2291-9694
Éditeur: PubMed
DOI: 10.2196/30483

An Early Disc Herniation Identification System for Advancement in the Standard Medical Screening Procedure Based on Bayes Theorem

Auteurs: Tijana Sustersic, Vesna Rankovic, Miodrag Peulic, Aleksandar Peulic
Publié dans: IEEE Journal of Biomedical and Health Informatics, Numéro 24/1, 2020, Page(s) 151-159, ISSN 2168-2194
Éditeur: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/jbhi.2019.2899665

Application of Machine Learning for Segmentation of the Pulmonary Acinus Imaged by Synchrotron X-Ray Tomography

Auteurs: B. Arsic, I. Saveljic, F.S. Henry, N. Filipovic, A. Tsuda
Publié dans: Journal of Aerosol Medicine and Pulmonary Drug Delivery, 2023, ISSN 1941-2703
Éditeur: Mary Ann Liebert, Inc. publishers
DOI: 10.1089/jamp.2022.0051

Machine Learning Approach for Predicting Wall Shear Distribution for Abdominal Aortic Aneurysm and Carotid Bifurcation Models

Auteurs: Jordanski, M., Radovic, M., Milosevic, Z., Filipovic, N., Obradovic, Z.
Publié dans: IEEE Journal of Biomedical and Health Informatics, 2018, ISSN 2168-2208
Éditeur: IEEE
DOI: 10.1109/jbhi.2016.2639818

Development of SGABU Platform for Multiscale Modeling

Auteurs: J. Nikolić, A. Atanasijević, A. Živić, T. Šušteršič, M. Ivanović, N. Filipović
Publié dans: IPSI Transactions on Internet Research, 2022, ISSN 1820-4503
Éditeur: IPSI Bgd TIR
DOI: 10.58245/ipsi.tir.22jr.09

Comparative Assessment of In Vitro and In Silico Methods for Aerodynamic Characterization of Powders for Inhalation

Auteurs: Ignjatovic J, Sustersic T, Bodic A, Cvijic S, Djuris J, Rossi A, Dobricic V, Ibric S, Filipovic N
Publié dans: Pharmaceutics, Numéro 13 (11), 2021, ISSN 1999-4923
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics13111831

Validation of lattice Boltzmann based software for blood flow simulations in complex patient-specific arteries against traditional CFD methods

Auteurs: T. Djukic, M. Topalovic, N. Filipovic
Publié dans: Mathematics and Computers in Simulation, 2023, ISSN 0378-4754
Éditeur: Elsevier BV
DOI: 10.1016/j.matcom.2022.07.027

Hierarchical biomechanics: Concepts, bone as prominent example, and perspectives beyond

Auteurs: C. Hellmich, N. Ukaj, B. Smeets, H. van Oosterwyck, N. Filipović, L. Zelaya-Lainez, J. Kalliauer, S. Scheiner
Publié dans: Applied Mechanics Reviews, 2022, ISSN 0003-6900
Éditeur: ASME
DOI: 10.1115/1.4055032

A novel Composite Smeared Finite Element for Mechanics (CSFEM) – some applications

Auteurs: V. Simic, M. Milosevic, V. Milicevic, N. Filipovic, M. Kojic
Publié dans: Technology and Health Care, 2022, ISSN 1878-7401
Éditeur: IOS Press BV

AI in Medical Imaging Informatics: Current Challenges and Future Directions

Auteurs: Andreas S. Panayides, Amir Amini, Nenad D. Filipovic, Ashish Sharma, Sotirios A. Tsaftaris, Alistair Young, David Foran, Nhan Do, Spyretta Golemati, Tahsin Kurc, Kun Huang, Konstantina S. Nikita, Ben P. Veasey, Michalis Zervakis, Joel H. Saltz, Constantinos S. Pattichis
Publié dans: IEEE Journal of Biomedical and Health Informatics, Numéro 24/7, 2020, Page(s) 1837-1857, ISSN 2168-2194
Éditeur: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/jbhi.2020.2991043

Sacubitril/valsartan reverses cardiac structure and function in experimental model of hypertension-induced hypertrophic cardiomyopathy

Auteurs: Jeremic J, Govoruskina N, Bradic J, Milosavljevic I, Srejovic I, Zivkovic V, Jeremic N, Nikolic Turnic T, Tanaskovic I, Bolevich S, Jakovljevic V, Bolevich S, Zivanovic MN, Okwose N, Seklic D, Milivojevic N, Grujic J, Velicki L, MacGowan G, Jakovljevic DG, Filipovic N.
Publié dans: Mol Cell Biochem., 2023, ISSN 1573-4919
Éditeur: Springer
DOI: 10.1007/s11010-023-04690-7

Coupled in silico platform: Computational Fluid Dynamics (CFD) and Physiologically-Based Pharmacokinetic (PBPK) modelling

Auteurs: Vulović A., Šušteršič T., Cvijić S., Ibrić S., Filipović N.
Publié dans: European Journal of Pharmaceutical Sciences (EJPS), 2017, Page(s) 171-184, ISSN 0928-0987
Éditeur: Elsevier BV
DOI: 10.1016/j.ejps.2017.10.022

Computational Modeling on Drugs Effects for Left Ventricle in Cardiomyopathy Disease

Auteurs: S. Tomasevic, M. Milosevic, B. Milicevic, V. Simic, M. Prodanovic, S. Mijailovich, N. Filipovic
Publié dans: Pharmaceutics, 2023, ISSN 1999-4923
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics15030793

Fractional flow reserve-based patient risk classification

Auteurs: M. Stanojević Pirković, O. Pavić, F. Filipović, I. Saveljić, T. Geroski, T. Exarchos, N. Filipović
Publié dans: Diagnostics, 2023, ISSN 2075-4418
Éditeur: MDPI
DOI: 10.3390/diagnostics13213349

Modeling ischemia with finite elements and automated machine learning

Auteurs: Marko Robnik-Šikonja, Miloš Radović, Smiljana Đorović, Bojana Anđelković-Ćirković, Nenad Filipović
Publié dans: Journal of Computational Science, Numéro 29, 2018, Page(s) 99-106, ISSN 1877-7503
Éditeur: Elsevier BV
DOI: 10.1016/j.jocs.2018.09.017

Machine learning and physical based modeling for cardiac hypertrophy

Auteurs: B. Milicevic, M. Milosevic, V. Simic, A. Preveden, L. Velicki, Dj. Jakovljevic, Z. Bosnic, M. Piculin, B. Zunkovic, M. Kojic, N. Filipovic
Publié dans: Heliyon, 2023, ISSN 2405-8440
Éditeur: Cell Press
DOI: 10.1016/j.heliyon.2023.e16724

Optimization and prediction of ibuprofen release from 3D DLP printlets using artificial neural networks

Auteurs: Madzarevic, M.; Medarevic, D.; Vulovic, A.; Sustersic, T.; Djuris, J.; Filipovic, N.; Ibric, S
Publié dans: Pharmaceutics, 2019, ISSN 1999-4923
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics11100544

Finite element analysis of a knee joint during jump

Auteurs: R. Radaković, A. Vulović, T. Exarchos, N. Filipović
Publié dans: Journal of the Serbian Society for Computational Mechanics, 2022, ISSN 1820-6530
Éditeur: The Serbian Society for Computational Mechanics (SSCM)
DOI: 10.24874/jsscm.2022.16.02.06

Big data in multiscale modelling: from medical image processing to personalized models

Auteurs: T. Geroski, D. G. Jakovljevic, N. Filipovic
Publié dans: Journal of Big Data, 2023, ISSN 0967-0912
Éditeur: Institute of Materials
DOI: 10.1186/s40537-023-00763-y

Numerical modeling of the motion of otoconia particles in the patient-specific semicircular canal

Auteurs: Tijana Djukic, Igor Saveljic, Nenad Filipovic
Publié dans: Computational Particle Mechanics, Numéro 6/4, 2019, Page(s) 767-780, ISSN 2196-4378
Éditeur: Springer
DOI: 10.1007/s40571-019-00260-1

Combined Biological and Numerical Modeling Approach for Better Understanding of the Cancer Viability and Apoptosis

Auteurs: M. Živanović, M. Gazdić Janković, A. Ramović Hamzagić, K. Virijević, N. Milivojević, K. Pecić, D. Šeklić, M. Jovanović, N. Kastratović, A. Mirić, et al
Publié dans: Pharmaceutics, 2023, ISSN 1999-4923
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics15061628

Numerical Modeling of Particle Dynamics Inside a Dry Powder Inhaler

Auteurs: T. Šušteršič, A. Bodić J. Ignjatović, S. Cvijić, S. Ibrić, N. Filipović
Publié dans: Pharmaceutics, 2022, ISSN 1999-4923
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics14122591

Numerical vs analytical comparison with experimental fractional flow reserve values of right coronary artery stenosis

Auteurs: A. Milovanovic, I. Saveljic, N. Filipovic
Publié dans: Technology and health care, 2023, ISSN 1878-7401
Éditeur: IOS Press BV
DOI: 10.3233/thc-220435

SGABU computational platform for multiscale modeling: bridging the gap between education and research

Auteurs: Tijana Geroski, Orestis Gkaintes, Aleksandra Vulović, Niketa Ukaj, Jorge Barrasa-Fano, Fernando Perez-Boerema, Bogdan Milićević, Aleksandar Atanasijević, Jelena Živković, Andreja Živić, Maria Roumpi, Themis Exarchos, Christian Hellmich, Stefan Scheiner, Hans Van Oosterwyck, Djordje Jakovljević, Miloš Ivanović, Nenad Filipović
Publié dans: Computer Methods and Programs in Biomedicine, 2024, ISSN 0169-2607
Éditeur: Elsevier BV
DOI: 10.1016/j.cmpb.2023.107935

A comparison of classifiers in biomedical signal processing as a decision support system in disc hernia diagnosis

Auteurs: Tijana Šušteršič, Vladimir Milovanović, Vesna Ranković, Nenad Filipović
Publié dans: Computers in Biology and Medicine, Numéro 125, 2020, Page(s) 103978, ISSN 0010-4825
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.compbiomed.2020.103978

Simulating fluid flow within coronary arteries using parallelized sparse lattice bolztmann method

Auteurs: Djukic T, Filipovic N
Publié dans: ICSSM 2021 Proceedings, 2021
Éditeur: Serbian Society of Mechanics
DOI: 10.5281/zenodo.6323621

Computational Finite Element Analysis of Aortic Root with Bicuspid Valve

Auteurs: Smiljana Tomasevic; Igor Saveljic; Lazar Velicki; Nenad Filipovic
Publié dans: Crossref, Numéro 2, 2021
Éditeur: IEEE
DOI: 10.1109/bibe52308.2021.9635269

Comparison of mechanical response of knee joint with healthy and damaged femoral cartilage

Auteurs: Aleksandra Vulovic; Giuseppe Filardo; Nenad Filipovic
Publié dans: Crossref, Numéro 2, 2021
Éditeur: IEEE
DOI: 10.1109/bibe52308.2021.9635319

Simulation of Deployment of Multiple Stents Within Deformable Artery

Auteurs: Tijana Djukic, Igor Saveljic, Gualtiero Pelosi, Oberdan Parodi, Nenad Filipovic
Publié dans: 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE), 2019, Page(s) 454-457, ISBN 978-1-7281-4617-1
Éditeur: IEEE
DOI: 10.1109/bibe.2019.00088

Machine Learning-based Image Processing in Support of Discus Hernia Diagnosis

Auteurs: Tijana Sustersic; Vesna Rankovic; Voiin Kovacevic; Vladimir Milovanovic; Lukas Rasulic; Nenad Filipovic
Publié dans: Crossref, Numéro 2, 2021
Éditeur: IEEE
DOI: 10.1109/bibe52308.2021.9635305

Epidemiological forecasting of COVID-19 infection using deep learning approach

Auteurs: Andela Blagojevic; Tijana Sustersic; Nenad Filipovic
Publié dans: Crossref, Numéro 1, 2021
Éditeur: IEEE
DOI: 10.1109/bibe52308.2021.9635289

Numerical modeling the motion of otoconia particles in the semicircular canal under whole body vibration

Auteurs: Saveljic I, Macuzic Saveljic S, Nikolic D, Djukic T, Djorovic S, Lukic J, Filipovic N
Publié dans: ICSSM 2021 Proceedings, 2021
Éditeur: Serbian Society of Mechanics
DOI: 10.5281/zenodo.6323580

Calculation of femoral cortical bone elasticity modulus from computed tomography scans

Auteurs: Vulovic A, Filipovic N
Publié dans: ICSSM 2021 Proceedings, 2021
Éditeur: Serbian Society of Mechanics
DOI: 10.5281/zenodo.6323636

Automatic segmentation and 3D reconstruction of patient- Specific carotid artery by using ultrasound images

Auteurs: Milos Anic, Branko Arsic, Tijana Djukic, Smiljana Tomasevic, Branko Gakovic, Igor Koncar, Nenad Filipovic
Publié dans: 2023
Éditeur: University of Kragujevac
DOI: 10.5281/zenodo.10519120

Microfluidic Lab-on-Chip System Development for Cell Culture Cultivation

Auteurs: Milivojevic N, Zivanovic M, Nikolic D, Jovanovic Z, Seklic D, Nikolic M, Filipovic N
Publié dans: ICSSM 2021 Proceedings, 2021
Éditeur: Serbian Society of Mechanics
DOI: 10.5281/zenodo.6323630

Numerical analysis of vibration effects on the lumbar spine

Auteurs: Igor Saveljic, Slavica Macuzic Saveljic, Nenad Filipovic
Publié dans: 2021 20th International Symposium INFOTEH-JAHORINA (INFOTEH), 2021, Page(s) 1-4, ISBN 978-1-7281-8229-2
Éditeur: IEEE
DOI: 10.1109/infoteh51037.2021.9400660

Hemodynamics of Femoro-Popliteal “Bi-Pass” Surgery using FEA Methods

Auteurs: Dalibor D. Nikolic; Dragan B. Sekulic; Danko Z. Milasinovic; Dragana S. Paunovic; Igor M. SekuliC; Igor B. Saveljic; Nenad D. Filipovic
Publié dans: Crossref, Numéro 2, 2021
Éditeur: IEEE
DOI: 10.1109/bibe52308.2021.9635376

Automatic Curvature Analysis for Finely Interpolated Spinal Curves

Auteurs: Mihai Neghina; Radu Emanuil Petruse; Sasa Cukovic; Caliri Schiau; Nenad Filipovic
Publié dans: Crossref, Numéro 2, 2021
Éditeur: IEEE
DOI: 10.1109/bibe52308.2021.9635424

Computational modeling in bioengineering and bioinformatics

Auteurs: N Filipovic
Publié dans: 2019, ISBN 978-0-128-19583-3
Éditeur: Elsevier

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