Increasing scientific, technological and innovation capacity of Serbia as a Widening country in the domain of multiscale modelling and medical informatics in biomedical engineering

Rezultaty

Best practices for building the innovation capacity

This report will summarize effective capacity building approaches at universities in the EU region The aims are to draw lessons that will lead to opportunity to help the strengthening of knowledge framework and elearning at UKG

Materials for teaching and learning purposes

The report will focus on relevant materials including tutorials, guidelines, case studies and best practice examples in order to facilitate students’ learning and training.

State of the art in bioinformatics, imaging informatics, sensor informatics, public health informatics

The report will include the analysis of the state of the art for enabling technologies of devices and sensors databases systems signals and big data analytics It will also include machine learning artificial intelligence telemedicine Internet of Things IOT mHealth eHealth human computer interface bioinformatics sensors imaging to achieve patient specific outcome driven health care The analysed methods will be part of the integrated SGABU platform

Publications in high impact journals

List of peerreviewed publications in the field of multiscale modelling and medical informatics in biomedical engineering of the coordinating entity UKG during the three years preceding the start date of the project

Collection of successful stories

The report will present successful stories from spin-off companies in the field of multiscale modelling and medical informatics in biomedical engineering, providing guidelines and recommendations for UKG. A collection of successful stories will be printed as a brochure.

State of the art in the multiscale modelling in biomedical engineering

The report will include the analysis of the current stateoftheart of multiscale modelling to provide the basis for the SGABU platform

Project Website

A website will be created to provide a first access point for the public UKG will have the main role in creation and maintenance of project website and dissemination activities related to project promotion

Publikacje

Simulation of organ-on-a-chip systems

Autorzy: Filipovic, N., Nikolic, M., Sustersic, T.
Opublikowane w: Biomaterials for Organ and Tissue Regeneration – New Technologies and Future Prospects, 2020
Wydawca: Elsevier

Computational modeling of atherosclerosis

Autorzy: Nenad Filipovic
Opublikowane w: Computational Modeling in Bioengineering and Bioinformatics, 2019, Strona(/y) 1-39
Wydawca: Elsevier

Computational modelling of dry powder inhalers for pulmonary drug delivery

Autorzy: Sustersic, T., Filipovic, N.
Opublikowane w: Computational Modeling in Bioengineering and Bioinformatics, 2020
Wydawca: Elsevier

Computational analysis of abdominal aortic aneurysm before and after endovascular aneurysm repair

Autorzy: Smiljana Djorovic, Nenad Filipovic
Opublikowane w: Computational Modeling in Bioengineering and Bioinformatics, 2019, Strona(/y) 353-386
Wydawca: Elsevier

Aortic Dissection: Numerical Modeling, Virtual Surgery

Autorzy: Igor B. Saveljic, Nenad Filipovic
Opublikowane w: Computational Modeling in Bioengineering and Bioinformatics, 2019, Strona(/y) 137-178
Wydawca: Elsevier

Numerical modeling of cell separation in microfluidic chips

Autorzy: Tijana Đukić, Nenad Filipovic
Opublikowane w: Computational Modeling in Bioengineering and Bioinformatics, 2019, Strona(/y) 321-352
Wydawca: Elsevier

Lab-on-a-chip and epithelial lung cells modeling

Autorzy: Milica Nikolic, Nenad Filipovic
Opublikowane w: Computational Modeling in Bioengineering and Bioinformatics, 2019, Strona(/y) 105-135
Wydawca: Elsevier

ace Recognition Using Maxeler DataFlow, Exploring the DataFlow Supercomputing Paradigm

Autorzy: Tijana Sustersic, Aleksandra Vulovic, Nemanja Trifunovic, Ivan Milankovic, Nenad Filipovic
Opublikowane w: Exploring the DataFlow Supercomputing Paradigm, 2019, Strona(/y) 171-196
Wydawca: Springer

Computer modeling of cochlea mechanics

Autorzy: Velibor Isailovic, Nenad Filipovic
Opublikowane w: Computational Modeling in Bioengineering and Bioinformatics, 2019, Strona(/y) 289-319
Wydawca: Elsevier

The biomechanics of lower human extremities

Autorzy: Aleksandra Vulović, Nenad Filipovic
Opublikowane w: Computational Modeling in Bioengineering and Bioinformatics, 2019, Strona(/y) 179-210
Wydawca: Elsevier

Computer Modeling of Stent Deployment in the Coronary Artery Coupled with Plaque Progression

Autorzy: Nenad Filipovic, Zarko Milosevic, Igor Saveljic, Dalibor Nikolic, Milos Radovic
Opublikowane w: Biomaterials in Clinical Practice, 2018, Strona(/y) 659-693, ISBN 978-3-319-68024-8
Wydawca: Springer International Publishing
DOI: 10.1007/978-3-319-68025-5_25

A Deep Learning Model for Automatic Detection and Classification of Disc Herniation in Magnetic Resonance Images

Autorzy: T. Šušteršič, V. Ranković, V. Milovanović, V. Kovačević, L. Rasulić, N. Filipović
Opublikowane w: IEEE Journal of Biomedical and Health Informatics, 2022, ISSN 2168-2208
Wydawca: IEEE
DOI: 10.1109/jbhi.2022.3209585

A study on the accuracy and efficiency of the improved numerical model for stent implantation using clinical data

Autorzy: Tijana Djukic, Igor Saveljic, Gualtiero Pelosi, Oberdan Parodi, Nenad Filipovic
Opublikowane w: Computer Methods and Programs in Biomedicine, 2021, Strona(/y) 106196, ISSN 0169-2607
Wydawca: Elsevier BV
DOI: 10.1016/j.cmpb.2021.106196

Disease progression of hypertrophic cardiomyopathy: modeling using machine learning

Autorzy: M. Piculin, T. Smole, B. Zunkovic, E. Kokalj, M. Robnik-Sikonja, M. Kukar, D. I. Fotiadis, V. C. Pezoulas, N. S. Tachos, F. Barlocco, F. Mazzarotto, D. Popović, L. S. Maier, L. Velicki, I. Olivotto, G. A. MacGowan, D. G. Jakovljević, N. Filipovic, Z. Bosnic Z
Opublikowane w: JMIR Medical Informatics, 2022, ISSN 2291-9694
Wydawca: PubMed
DOI: 10.2196/30483

An Early Disc Herniation Identification System for Advancement in the Standard Medical Screening Procedure Based on Bayes Theorem

Autorzy: Tijana Sustersic, Vesna Rankovic, Miodrag Peulic, Aleksandar Peulic
Opublikowane w: IEEE Journal of Biomedical and Health Informatics, Numer 24/1, 2020, Strona(/y) 151-159, ISSN 2168-2194
Wydawca: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/jbhi.2019.2899665

Application of Machine Learning for Segmentation of the Pulmonary Acinus Imaged by Synchrotron X-Ray Tomography

Autorzy: B. Arsic, I. Saveljic, F.S. Henry, N. Filipovic, A. Tsuda
Opublikowane w: Journal of Aerosol Medicine and Pulmonary Drug Delivery, 2023, ISSN 1941-2703
Wydawca: Mary Ann Liebert, Inc. publishers
DOI: 10.1089/jamp.2022.0051

Machine Learning Approach for Predicting Wall Shear Distribution for Abdominal Aortic Aneurysm and Carotid Bifurcation Models

Autorzy: Jordanski, M., Radovic, M., Milosevic, Z., Filipovic, N., Obradovic, Z.
Opublikowane w: IEEE Journal of Biomedical and Health Informatics, 2018, ISSN 2168-2208
Wydawca: IEEE
DOI: 10.1109/jbhi.2016.2639818

Development of SGABU Platform for Multiscale Modeling

Autorzy: J. Nikolić, A. Atanasijević, A. Živić, T. Šušteršič, M. Ivanović, N. Filipović
Opublikowane w: IPSI Transactions on Internet Research, 2022, ISSN 1820-4503
Wydawca: IPSI Bgd TIR
DOI: 10.58245/ipsi.tir.22jr.09

Comparative Assessment of In Vitro and In Silico Methods for Aerodynamic Characterization of Powders for Inhalation

Autorzy: Ignjatovic J, Sustersic T, Bodic A, Cvijic S, Djuris J, Rossi A, Dobricic V, Ibric S, Filipovic N
Opublikowane w: Pharmaceutics, Numer 13 (11), 2021, ISSN 1999-4923
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics13111831

Validation of lattice Boltzmann based software for blood flow simulations in complex patient-specific arteries against traditional CFD methods

Autorzy: T. Djukic, M. Topalovic, N. Filipovic
Opublikowane w: Mathematics and Computers in Simulation, 2023, ISSN 0378-4754
Wydawca: Elsevier BV
DOI: 10.1016/j.matcom.2022.07.027

Hierarchical biomechanics: Concepts, bone as prominent example, and perspectives beyond

Autorzy: C. Hellmich, N. Ukaj, B. Smeets, H. van Oosterwyck, N. Filipović, L. Zelaya-Lainez, J. Kalliauer, S. Scheiner
Opublikowane w: Applied Mechanics Reviews, 2022, ISSN 0003-6900
Wydawca: ASME
DOI: 10.1115/1.4055032

A novel Composite Smeared Finite Element for Mechanics (CSFEM) – some applications

Autorzy: V. Simic, M. Milosevic, V. Milicevic, N. Filipovic, M. Kojic
Opublikowane w: Technology and Health Care, 2022, ISSN 1878-7401
Wydawca: IOS Press BV

AI in Medical Imaging Informatics: Current Challenges and Future Directions

Autorzy: Andreas S. Panayides, Amir Amini, Nenad D. Filipovic, Ashish Sharma, Sotirios A. Tsaftaris, Alistair Young, David Foran, Nhan Do, Spyretta Golemati, Tahsin Kurc, Kun Huang, Konstantina S. Nikita, Ben P. Veasey, Michalis Zervakis, Joel H. Saltz, Constantinos S. Pattichis
Opublikowane w: IEEE Journal of Biomedical and Health Informatics, Numer 24/7, 2020, Strona(/y) 1837-1857, ISSN 2168-2194
Wydawca: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/jbhi.2020.2991043

Sacubitril/valsartan reverses cardiac structure and function in experimental model of hypertension-induced hypertrophic cardiomyopathy

Autorzy: Jeremic J, Govoruskina N, Bradic J, Milosavljevic I, Srejovic I, Zivkovic V, Jeremic N, Nikolic Turnic T, Tanaskovic I, Bolevich S, Jakovljevic V, Bolevich S, Zivanovic MN, Okwose N, Seklic D, Milivojevic N, Grujic J, Velicki L, MacGowan G, Jakovljevic DG, Filipovic N.
Opublikowane w: Mol Cell Biochem., 2023, ISSN 1573-4919
Wydawca: Springer
DOI: 10.1007/s11010-023-04690-7

Coupled in silico platform: Computational Fluid Dynamics (CFD) and Physiologically-Based Pharmacokinetic (PBPK) modelling

Autorzy: Vulović A., Šušteršič T., Cvijić S., Ibrić S., Filipović N.
Opublikowane w: European Journal of Pharmaceutical Sciences (EJPS), 2017, Strona(/y) 171-184, ISSN 0928-0987
Wydawca: Elsevier BV
DOI: 10.1016/j.ejps.2017.10.022

Computational Modeling on Drugs Effects for Left Ventricle in Cardiomyopathy Disease

Autorzy: S. Tomasevic, M. Milosevic, B. Milicevic, V. Simic, M. Prodanovic, S. Mijailovich, N. Filipovic
Opublikowane w: Pharmaceutics, 2023, ISSN 1999-4923
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics15030793

Fractional flow reserve-based patient risk classification

Autorzy: M. Stanojević Pirković, O. Pavić, F. Filipović, I. Saveljić, T. Geroski, T. Exarchos, N. Filipović
Opublikowane w: Diagnostics, 2023, ISSN 2075-4418
Wydawca: MDPI
DOI: 10.3390/diagnostics13213349

Modeling ischemia with finite elements and automated machine learning

Autorzy: Marko Robnik-Šikonja, Miloš Radović, Smiljana Đorović, Bojana Anđelković-Ćirković, Nenad Filipović
Opublikowane w: Journal of Computational Science, Numer 29, 2018, Strona(/y) 99-106, ISSN 1877-7503
Wydawca: Elsevier BV
DOI: 10.1016/j.jocs.2018.09.017

Machine learning and physical based modeling for cardiac hypertrophy

Autorzy: B. Milicevic, M. Milosevic, V. Simic, A. Preveden, L. Velicki, Dj. Jakovljevic, Z. Bosnic, M. Piculin, B. Zunkovic, M. Kojic, N. Filipovic
Opublikowane w: Heliyon, 2023, ISSN 2405-8440
Wydawca: Cell Press
DOI: 10.1016/j.heliyon.2023.e16724

Optimization and prediction of ibuprofen release from 3D DLP printlets using artificial neural networks

Autorzy: Madzarevic, M.; Medarevic, D.; Vulovic, A.; Sustersic, T.; Djuris, J.; Filipovic, N.; Ibric, S
Opublikowane w: Pharmaceutics, 2019, ISSN 1999-4923
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics11100544

Finite element analysis of a knee joint during jump

Autorzy: R. Radaković, A. Vulović, T. Exarchos, N. Filipović
Opublikowane w: Journal of the Serbian Society for Computational Mechanics, 2022, ISSN 1820-6530
Wydawca: The Serbian Society for Computational Mechanics (SSCM)
DOI: 10.24874/jsscm.2022.16.02.06

Big data in multiscale modelling: from medical image processing to personalized models

Autorzy: T. Geroski, D. G. Jakovljevic, N. Filipovic
Opublikowane w: Journal of Big Data, 2023, ISSN 0967-0912
Wydawca: Institute of Materials
DOI: 10.1186/s40537-023-00763-y

Numerical modeling of the motion of otoconia particles in the patient-specific semicircular canal

Autorzy: Tijana Djukic, Igor Saveljic, Nenad Filipovic
Opublikowane w: Computational Particle Mechanics, Numer 6/4, 2019, Strona(/y) 767-780, ISSN 2196-4378
Wydawca: Springer
DOI: 10.1007/s40571-019-00260-1

Combined Biological and Numerical Modeling Approach for Better Understanding of the Cancer Viability and Apoptosis

Autorzy: M. Živanović, M. Gazdić Janković, A. Ramović Hamzagić, K. Virijević, N. Milivojević, K. Pecić, D. Šeklić, M. Jovanović, N. Kastratović, A. Mirić, et al
Opublikowane w: Pharmaceutics, 2023, ISSN 1999-4923
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics15061628

Numerical Modeling of Particle Dynamics Inside a Dry Powder Inhaler

Autorzy: T. Šušteršič, A. Bodić J. Ignjatović, S. Cvijić, S. Ibrić, N. Filipović
Opublikowane w: Pharmaceutics, 2022, ISSN 1999-4923
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pharmaceutics14122591

Numerical vs analytical comparison with experimental fractional flow reserve values of right coronary artery stenosis

Autorzy: A. Milovanovic, I. Saveljic, N. Filipovic
Opublikowane w: Technology and health care, 2023, ISSN 1878-7401
Wydawca: IOS Press BV
DOI: 10.3233/thc-220435

SGABU computational platform for multiscale modeling: bridging the gap between education and research

Autorzy: Tijana Geroski, Orestis Gkaintes, Aleksandra Vulović, Niketa Ukaj, Jorge Barrasa-Fano, Fernando Perez-Boerema, Bogdan Milićević, Aleksandar Atanasijević, Jelena Živković, Andreja Živić, Maria Roumpi, Themis Exarchos, Christian Hellmich, Stefan Scheiner, Hans Van Oosterwyck, Djordje Jakovljević, Miloš Ivanović, Nenad Filipović
Opublikowane w: Computer Methods and Programs in Biomedicine, 2024, ISSN 0169-2607
Wydawca: Elsevier BV
DOI: 10.1016/j.cmpb.2023.107935

A comparison of classifiers in biomedical signal processing as a decision support system in disc hernia diagnosis

Autorzy: Tijana Šušteršič, Vladimir Milovanović, Vesna Ranković, Nenad Filipović
Opublikowane w: Computers in Biology and Medicine, Numer 125, 2020, Strona(/y) 103978, ISSN 0010-4825
Wydawca: Pergamon Press Ltd.
DOI: 10.1016/j.compbiomed.2020.103978

Simulating fluid flow within coronary arteries using parallelized sparse lattice bolztmann method

Autorzy: Djukic T, Filipovic N
Opublikowane w: ICSSM 2021 Proceedings, 2021
Wydawca: Serbian Society of Mechanics
DOI: 10.5281/zenodo.6323621

Computational Finite Element Analysis of Aortic Root with Bicuspid Valve

Autorzy: Smiljana Tomasevic; Igor Saveljic; Lazar Velicki; Nenad Filipovic
Opublikowane w: Crossref, Numer 2, 2021
Wydawca: IEEE
DOI: 10.1109/bibe52308.2021.9635269

Comparison of mechanical response of knee joint with healthy and damaged femoral cartilage

Autorzy: Aleksandra Vulovic; Giuseppe Filardo; Nenad Filipovic
Opublikowane w: Crossref, Numer 2, 2021
Wydawca: IEEE
DOI: 10.1109/bibe52308.2021.9635319

Simulation of Deployment of Multiple Stents Within Deformable Artery

Autorzy: Tijana Djukic, Igor Saveljic, Gualtiero Pelosi, Oberdan Parodi, Nenad Filipovic
Opublikowane w: 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE), 2019, Strona(/y) 454-457, ISBN 978-1-7281-4617-1
Wydawca: IEEE
DOI: 10.1109/bibe.2019.00088

Machine Learning-based Image Processing in Support of Discus Hernia Diagnosis

Autorzy: Tijana Sustersic; Vesna Rankovic; Voiin Kovacevic; Vladimir Milovanovic; Lukas Rasulic; Nenad Filipovic
Opublikowane w: Crossref, Numer 2, 2021
Wydawca: IEEE
DOI: 10.1109/bibe52308.2021.9635305

Epidemiological forecasting of COVID-19 infection using deep learning approach

Autorzy: Andela Blagojevic; Tijana Sustersic; Nenad Filipovic
Opublikowane w: Crossref, Numer 1, 2021
Wydawca: IEEE
DOI: 10.1109/bibe52308.2021.9635289

Numerical modeling the motion of otoconia particles in the semicircular canal under whole body vibration

Autorzy: Saveljic I, Macuzic Saveljic S, Nikolic D, Djukic T, Djorovic S, Lukic J, Filipovic N
Opublikowane w: ICSSM 2021 Proceedings, 2021
Wydawca: Serbian Society of Mechanics
DOI: 10.5281/zenodo.6323580

Calculation of femoral cortical bone elasticity modulus from computed tomography scans

Autorzy: Vulovic A, Filipovic N
Opublikowane w: ICSSM 2021 Proceedings, 2021
Wydawca: Serbian Society of Mechanics
DOI: 10.5281/zenodo.6323636

Automatic segmentation and 3D reconstruction of patient- Specific carotid artery by using ultrasound images

Autorzy: Milos Anic, Branko Arsic, Tijana Djukic, Smiljana Tomasevic, Branko Gakovic, Igor Koncar, Nenad Filipovic
Opublikowane w: 2023
Wydawca: University of Kragujevac
DOI: 10.5281/zenodo.10519120

Microfluidic Lab-on-Chip System Development for Cell Culture Cultivation

Autorzy: Milivojevic N, Zivanovic M, Nikolic D, Jovanovic Z, Seklic D, Nikolic M, Filipovic N
Opublikowane w: ICSSM 2021 Proceedings, 2021
Wydawca: Serbian Society of Mechanics
DOI: 10.5281/zenodo.6323630

Numerical analysis of vibration effects on the lumbar spine

Autorzy: Igor Saveljic, Slavica Macuzic Saveljic, Nenad Filipovic
Opublikowane w: 2021 20th International Symposium INFOTEH-JAHORINA (INFOTEH), 2021, Strona(/y) 1-4, ISBN 978-1-7281-8229-2
Wydawca: IEEE
DOI: 10.1109/infoteh51037.2021.9400660

Hemodynamics of Femoro-Popliteal “Bi-Pass” Surgery using FEA Methods

Autorzy: Dalibor D. Nikolic; Dragan B. Sekulic; Danko Z. Milasinovic; Dragana S. Paunovic; Igor M. SekuliC; Igor B. Saveljic; Nenad D. Filipovic
Opublikowane w: Crossref, Numer 2, 2021
Wydawca: IEEE
DOI: 10.1109/bibe52308.2021.9635376

Automatic Curvature Analysis for Finely Interpolated Spinal Curves

Autorzy: Mihai Neghina; Radu Emanuil Petruse; Sasa Cukovic; Caliri Schiau; Nenad Filipovic
Opublikowane w: Crossref, Numer 2, 2021
Wydawca: IEEE
DOI: 10.1109/bibe52308.2021.9635424

Computational modeling in bioengineering and bioinformatics

Autorzy: N Filipovic
Opublikowane w: 2019, ISBN 978-0-128-19583-3
Wydawca: Elsevier

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