CORDIS provides links to public deliverables and publications of HORIZON projects.
Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .
Deliverables
Compilation of a data management plan.
Compilation of a report on communications and public engagement (WP5).
Final scientific advances report on WP1 (opens in new window)Compilation of a report on the scientific advances of WP1 (Primary CPG)
Final scientific advances report on WP2 (opens in new window)Compilation of a report on the scientific advances of WP2 (Evolutionary/Comparative CPG).
Final scientific advances report on WP3 (opens in new window)Compilation of a report on the scientific advances of WP3 (Translational CPG).
Collective scientific advances report 3 (opens in new window)Joint report of WP1-3 on their scientific advances
Report on training activities and career fair (opens in new window)Compilation of a report on training activities and career fair (WP4).
Scientific publications report (opens in new window)Compilation of a report on scientific publications (WP5).
Collective scientific advances report 1 (opens in new window)Joint report of WP13 on their scientific advances
Collective scientific advances report 2 (opens in new window)Joint report of WP1-3 on their scientific advances
Title: Pan-genome applicationsPreliminary course topics: (i) Building and comparing recombination networks (P.Bonizzoni UNIMIB, 1 ECTS); (ii) Advanced Linear Programming (L.Stougie NWO-I, 1 ECTS); (iii) Cancer evolution (G.Della Vedova UNIMIB, 0.5 ECTS); (iv) Probabilistic and machine learning methods (T.Vinař UKBA, 0.5 ECTS); (v) Reproducible research (J.Köster, 0.5 ECTS); (vi) Innovation, entrepreneurship, and commercial exploitation (F.Perraudeau PENDULUM, 0.5 ECTS). The school will include a multi-session hackathon where groups of participants will analyze pan-genomic data sets provided by non-academic partners (analysis leaders Z.Iqbal EMBL, F.Perraudeau PENDULUM, P.Bonizzoni UNIMIB).
Summer school 1 (opens in new window)Title: Algorithmic techniques in pan-genomicsPreliminary course topics: (i) Data structures for genomic variants (R.Durbin UCAM, T.Marschall UDUS, 0.5 ECTS), (ii) Pan-genome storage and search (J.Stoye UNIBI, 1 ECTS); (iii) Alignments of pan-genome graphs (V.Mäkinen UHEL, 1 ECTS); (iv) Research dissemination, open science and open access (T.Marschall UDUS, 0.5 ECTS); (v) Project management (J.Budiš GENETON, 0.5 ECTS); (vi) Scientific writing and research dissemination (A.Schönhuth UNIBI, 0.5 ECTS). The school will include a multi-session hackathon where groups of participants will analyze pan-genomic data sets provided by non- academic partners (analysis leaders B.Brejová UK BA, J.Budiš GENETON, T.Marschall UDUS)
Winter wet lab (opens in new window)Title: Collaborating with wet-lab biologistsThe winter school will give participants hands-on laboratory experience, allowing them to better understand wet-lab possibilities and limitations and become more effective collaborators with wet-lab biologists. Preliminary topics include: (i) Basic laboratory techniques, DNA extraction (UK BA, 0.5 ECTS); (ii) Sequencing with Oxford Nanopore devices: from DNA sample to sequences (XXX ONT, 1 ECTS), (iii) Illumina sequencing for clinical diagnostics (J.Budiš GENETON, 1 ECTS), (iv) Data analysis challenges (T.Vinař UK BA, 0.5 ECTS), (v) Soft-skills: Efficient interdisciplinary communication (Z.Iqbal EMBL, 0.5 ECTS), (vi) Soft-skills: Intellectual Property: Management and issues (W.Pirovano BC, 0.5 ECTS).
Annual workshop 2 (opens in new window)Title: Pan-genome sequencing and analysisThree half-days will be dedicated to scientific courses, one half-day to the soft-skills course. Other activities will include business meeting (afternoon of day 1), hackathon (afternoon of day 3), and problem sessions (evenings). The preliminary topics of the courses: (i) Metagenome assembly and analysis (R.Chikhi IP, 1 ECTS); (ii) Latest pan-genome research trends (seminars by advisory board members, 0.5 ECTS); (iii) Soft-skills: Improving research impact with social media presence (P. Peterlongo INRIA, 0.5 ECTS), (iv) Peer Community in bioinformatics: a new approach to reviewing and publishing (C. Scornavacca, CNRS, 0.5).
Supervisory Board of the network (opens in new window)Appoint a supervisory board of the ITN
Annual workshop 3 (opens in new window)Title: Large-scale pan-genomicsThree half-days will be dedicated to scientific courses, one half-day to the soft-skills course. Other activities will include business meeting (afternoon of day 1), hackathon (afternoon of day 3), and problem sessions (evenings). The preliminary topics of the courses: (i) Pan-genome data structure based AI/Machine Learning. (A.Schönhuth UNIBI, 1 ECTS); (ii) Distributed processing of large genomic data (K.Heljanko UHEL, 0.5 ECTS); (iii) Soft-skills: Communication techniques for research dissemination (L.Stougie NWO-I, 0.5 ECTS).
Annual Workshop 1 (opens in new window)Title Challenges of computational pangenomicsThree halfdays will be dedicated to scientific courses one halfday to the softskills course Other activities will include business meeting afternoon of day 1 hackathon afternoon of day 3 and problem sessions evenings The preliminary topics of the coursesi Overview of existing methods and tools for pangenomics SPissis NWOI E Rivals CNRS JStoye UNIBI 1 ECTS ii Overview of open challenges for pangenomics ASchonhuth UNIBI RDurbin UCAM TMarschall UDUS 05 ECTS iii Softskills Ethics in research research integrity Gender and Diversity Issues NPisanti UNIPI PBonizzoni UNIMIB 05 ECTS
Publications
Author(s):
Giulia Bernardini, Gabriele Fici, Paweł Gawrychowski, and Solon P. Pissis
Published in:
Leibniz International Proceedings in Informatics (LIPIcs), Issue 283, 2023, Page(s) 12:1-12:19, ISBN 978-3-95977-289-1
Publisher:
Schloss Dagstuhl – Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.isaac.2023.12
Author(s):
Estéban Gabory and Eric Rivals and Michelle Sweering and Hilde Verbeek and Pengfei Wang
Published in:
Proceedings of the Prague Stringology Conference 2023, 2023, Page(s) 42-56, ISBN 978-80-01-07206-6
Publisher:
Prague Stringology Club
Author(s):
Panagiotis Charalampopoulos and Huiping Chen and Peter Christen and Grigorios Loukides and Nadia Pisanti and Solon P. Pissis and Jakub Radoszewski
Published in:
32nd International Symposium on Algorithms and Computation (ISAAC 2021), Issue 212, 2021, Page(s) 65:1--65:19, ISSN 1868-8969
Publisher:
Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.isaac.2021.65
Author(s):
Park, Sangsoo; Park, Sung Gwan; Cazaux, Bastien; Park, Kunsoo; Rivals, Eric
Published in:
32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021), Issue 191, 2021, Page(s) 22:1--22:9, ISBN 978-3-95977-186-3
Publisher:
Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.cpm.2021.22
Author(s):
Bernardini, Giulia and Conte, Alessio and Gabory, Esteban and Grossi, Roberto and Loukides, Grigorios and Pissis, Solon P. and Punzi, Giulia and Sweering, Michelle
Published in:
33rd Annual Symposium on Combinatorial Pattern Matching (CPM 2022), Issue 223, 2022, Page(s) 16:1--16:17, ISSN 1868-8969
Publisher:
Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.cpm.2022.16
Author(s):
Wiktor Zuba and Grigorios Loukides and Solon P. Pissis and Sharma V. Thankachan
Published in:
49th International Symposium on Mathematical Foundations of Computer Science (MFCS 2024), Issue Vol 306, 2024, Page(s) 85:1–85:18
Publisher:
Schloss Dagstuhl – Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.mfcs.2024.85
Author(s):
Esteban Gabory, Chang Liu, Grigorios Loukides, Solon P. Pissis, Wiktor Zuba
Published in:
2024 IEEE 40th International Conference on Data Engineering (ICDE), 2024, Page(s) 4828-4842
Publisher:
IEEE
DOI:
10.1109/icde60146.2024.00367
Author(s):
Nicola Rizzo and Veli Mäkinen
Published in:
International Workshop on Combinatorial Algorithms: Combinatorial Algorithms, Issue 13270, 2022, Page(s) 480--493, ISBN 978-3-031-06678-8
Publisher:
Springer International Publishing
DOI:
10.1007/978-3-031-06678-8_35
Author(s):
Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis, Hilde Verbeek
Published in:
Lecture Notes in Computer Science, LATIN 2024: Theoretical Informatics, 2024, Page(s) 162-177
Publisher:
Springer Nature Switzerland
DOI:
10.1007/978-3-031-55598-5_11
Author(s):
Giulia Bernardini, Huiping Chen, Alessio Conte, Roberto Grossi, Veronica Guerrini, Grigorios Loukides, Nadia Pisanti, Solon P. Pissis
Published in:
Proceedings of the 2024 SIAM International Conference on Data Mining (SDM), 2024, Page(s) 190-198
Publisher:
Society for Industrial and Applied Mathematics
DOI:
10.1137/1.9781611978032.22
Author(s):
Panagiotis Charalampopoulos and Tomasz Kociumaka and Solon P. Pissis and Jakub Radoszewski
Published in:
29th Annual European Symposium on Algorithms (ESA 2021), Issue 204, 2021, Page(s) 30:1--30:17, ISSN 1868-8969
Publisher:
Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.esa.2021.30
Author(s):
Conte, Alessio; Grossi, Roberto; Loukides, Grigorios; Pisanti, Nadia; Pissis, Solon P.; Punzi, Giulia; Bampis, Evripidis; Pagourtzis, Aris
Published in:
Fundamentals of Computation Theory, 23rd International Symposium (FCT), Issue 12867, 2021, Page(s) 162--175, ISBN 978-3-030-86593-1
Publisher:
Springer International Publishing
DOI:
10.1007/978-3-030-86593-1_11
Author(s):
Nicola Rizzo and Veli Mäkinen
Published in:
33rd Annual Symposium on Combinatorial Pattern Matching (CPM 2022), Issue 223, 2022, Page(s) 480--493, ISBN 978-3-031-06678-8
Publisher:
Springer International Publishing
DOI:
10.4230/lipics.cpm.2022.19
Author(s):
Philip Bille and Yakov Nekrich and Solon P. Pissis
Published in:
19th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2024), Issue Vol 294, 2024, Page(s) 14:1–14:12
Publisher:
Schloss Dagstuhl – Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.swat.2024.14
Author(s):
Charalampopoulos, Panagiotis; Pissis, Solon P.; Radoszewski, Jakub; Bannai, Hideo; Holub, Jan
Published in:
33rd Annual Symposium on Combinatorial Pattern Matching (CPM 2022), Issue 223, 2022, Page(s) 20:1--20:9, ISSN 1868-8969
Publisher:
Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.cpm.2022.20
Author(s):
Loukides, Grigorios; Pissis, Solon P.; Mutzel, Petra; Pagh, Rasmus; Herman, Grzegorz
Published in:
29th Annual European Symposium on Algorithms (ESA 2021) . , 64 , Leibniz International Proceedings in Informatics, LIPIcs , vol. 204 , Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing , pp. 1-21 , 29th Annual European Symposium on Algorithms, ESA 2021 , Vitual, Lisbon , Portugal , 6/09/21 . https://doi.org/10.4230/LIPIcs.ESA.2021.64, Issue 204, 2021, Page(s) 64:1--64:21, ISSN 1868-8969
Publisher:
Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.esa.2021.64
Author(s):
Eric Rivals, Michelle Sweering, and Pengfei Wang
Published in:
Leibniz International Proceedings in Informatics (LIPIcs), Issue 261, 2023, Page(s) 100:1--100:14, ISBN 978-3-95977-278-5
Publisher:
Schloss Dagstuhl –- Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.icalp.2023.100
Author(s):
Njagi Moses Mwaniki and Nadia Pisanti
Published in:
ISBRA 2022: Bioinformatics Research and Applications, Issue 13760, 2023, Page(s) 204–216, ISSN 0302-9743
Publisher:
Springer Verlag
DOI:
10.1007/978-3-031-23198-8_19
Author(s):
Zsuzsanna Lipták, Luca Parmigiani
Published in:
Lecture Notes in Computer Science, LATIN 2024: Theoretical Informatics, 2024, Page(s) 130-145
Publisher:
Springer Nature Switzerland
DOI:
10.1007/978-3-031-55598-5_9
Author(s):
Bernardini, Giulia; Chen, Huiping; Loukides, Grigorios; Pissis, Solon P.; Stougie, Leen; Sweering, Michelle; Bannai, Hideo; Holub, Jan
Published in:
33rd Annual Symposium on Combinatorial Pattern Matching (CPM 2022), Issue 223, 2022, Page(s) 12:1-12:18, ISBN 978-3-95977-234-1
Publisher:
Schloss Dagstuhl - Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.cpm.2022.12
Author(s):
Grigorios Loukides and Solon P. Pissis and Sharma V. Thankachan and Wiktor Zuba
Published in:
34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023), Issue Vol 259, 2023, Page(s) 21:1--21:20, ISBN 978-3-95977-276-1
Publisher:
Schloss Dagstuhl - Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.cpm.2023.21
Author(s):
Andrej Baláž, Travis Gagie, Adrián Goga, Simon Heumos, Gonzalo Navarro, Alessia Petescia, Jouni Sirén
Published in:
Lecture Notes in Computer Science, LATIN 2024: Theoretical Informatics, 2024, Page(s) 178-192
Publisher:
Springer Nature Switzerland
DOI:
10.1007/978-3-031-55598-5_12
Author(s):
Adrián Goga, Lore Depuydt, Nathaniel K. Brown, Jan Fostier, Travis Gagie, Gonzalo Navarro
Published in:
2024 Data Compression Conference (DCC), 2024, Page(s) 123-132
Publisher:
IEEE
DOI:
10.1109/dcc58796.2024.00020
Author(s):
Njagi Mwaniki, Erik Garrison, Nadia Pisanti
Published in:
Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies, 2024, Page(s) 70-79
Publisher:
SCITEPRESS - Science and Technology Publications
DOI:
10.5220/0011666900003414
Author(s):
Giulia Bernardini; Esteban Gabory; Solon P. Pissis; Leen Stougie; Michelle Sweering; Wiktor Zuba
Published in:
Latin American Symposium on Theoretical Informatics, Issue 13568, 2022, Page(s) 20–37, ISBN 978-3-031-20624-5
Publisher:
Springer International Publishing
DOI:
10.48550/arxiv.2209.01095
Author(s):
Nadia Pisanti
Published in:
32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021), Issue 191, 2021, Page(s) 3:1--3:2, ISSN 1868-8969
Publisher:
Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.cpm.2021.3
Author(s):
Philip Bille and Inge Li Gørtz and Moshe Lewenstein and Solon P. Pissis and Eva Rotenberg and Teresa Anna Steiner
Published in:
41st International Symposium on Theoretical Aspects of Computer Science (STACS 2024), Issue Vol 289, 2024, Page(s) 16:1–16:21
Publisher:
Schloss Dagstuhl – Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.stacs.2024.16
Author(s):
Panagiotis Charalampopoulos and Tomasz Kociumaka and Jakub Radoszewski and Solon P. Pissis and Wojciech Rytter and Tomasz Waleń and Wiktor Zuba
Published in:
30th Annual European Symposium on Algorithms (ESA 2022), Issue 244, 2022, Page(s) 35:1--35:19, ISSN 1868-8969
Publisher:
Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.esa.2022.35
Author(s):
Askar Gafurov, Tomáš Vinař, Broňa Brejová
Published in:
Lecture Notes in Computer Science, Connecting with Computability, 2021, Page(s) 227-236
Publisher:
Springer International Publishing
DOI:
10.1007/978-3-030-80049-9_21
Author(s):
Baláž, Andrej; Petescia, Alessia
Published in:
the 23rd Conference Information Technologies – Applications and Theory (ITAT 2023), vol 3498, Issue 1, 2023, Page(s) 232-241
Publisher:
CEUR Workshop Proceedings
DOI:
10.48550/arxiv.2306.14689
Author(s):
Nicola Rizzo, Manuel Cáceres, Veli Mäkinen
Published in:
Lecture Notes in Computer Science, String Processing and Information Retrieval, 2023, Page(s) 353-366
Publisher:
Springer Nature Switzerland
DOI:
10.1007/978-3-031-43980-3_29
Author(s):
Esteban Gabory and Moses Njagi Mwaniki and Nadia Pisanti and Solon P. Pissis and Jakub Radoszewski and Michelle Sweering and Wiktor Zuba
Published in:
34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023), Issue Vol 259, 2023, Page(s) 11:1--11:20, ISBN 978-3-95977-276-1
Publisher:
Schloss Dagstuhl - Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.cpm.2023.11
Author(s):
Konstantinn Bonnet and Tobias Marschall and Daniel Doerr
Published in:
22nd International Workshop on Algorithms in Bioinformatics (WABI 2022), Issue 242, 2022, Page(s) 6:1--6:23, ISSN 1868-8969
Publisher:
Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.wabi.2022.6
Author(s):
Adrián Goga and Andrej Baláž
Published in:
22nd International Workshop on Algorithms in Bioinformatics (WABI 2022), Issue Vol 242, 2022, Page(s) 18:1--18:12, ISBN 978-3-95977-243-3
Publisher:
Schloss Dagstuhl - Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.wabi.2022.18
Author(s):
Rocco Ascone and Giulia Bernardini and Alessio Conte and Massimo Equi and Esteban Gabory and Roberto Grossi and Nadia Pisanti
Published in:
24th International Workshop on Algorithms in Bioinformatics (WABI 2024), Issue Vol 312, 2024, Page(s) 14:1–14:21
Publisher:
Schloss Dagstuhl – Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.wabi.2024.14
Author(s):
Eva Herencsárová, Broňa Brejová
Published in:
the 23rd Conference Information Technologies – Applications and Theory (ITAT 2023), vol 3498, Issue 1, 2023, Page(s) 232-241
Publisher:
CEUR Workshop Proceedings
DOI:
10.1101/2023.07.20.549917v1
Author(s):
Panagiotis Charalampopoulos and Solon P. Pissis and Jakub Radoszewski and Wojciech Rytter and Tomasz Waleń and Wiktor Zuba
Published in:
41st International Symposium on Theoretical Aspects of Computer Science (STACS 2024), Issue Vol 289, 2024, Page(s) 24:1–24:22
Publisher:
Schloss Dagstuhl – Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.stacs.2024.24
Author(s):
Verbeek, Hilde and Ayad, Lorraine A.K. and Loukides, Grigorios and Pissis, Solon P.
Published in:
35th Annual Symposium on Combinatorial Pattern Matching (CPM 2024), Issue Vol 296, 2024, Page(s) 28:1--28:13
Publisher:
Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.cpm.2024.28
Author(s):
Nicola Rizzo, Manuel Cáceres, and Veli Mäkinen
Published in:
Leibniz International Proceedings in Informatics (LIPIcs), Issue 273, 2023, Page(s) 10:1--10:17, ISBN 978-3-95977-294-5
Publisher:
Schloss Dagstuhl – Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.wabi.2023.10
Author(s):
Giulia Bernardini and Huiping Chen and Inge Li Gørtz and Christoffer Krogh and Grigorios Loukides and Solon P. Pissis and Leen Stougie and Michelle Sweering
Published in:
35th Annual Symposium on Combinatorial Pattern Matching (CPM 2024), Issue Vol 296, 2024, Page(s) 6:1–6:16
Publisher:
Schloss Dagstuhl – Leibniz-Zentrum für Informatik
DOI:
10.4230/lipics.cpm.2024.6
Author(s):
Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis
Published in:
Proceedings of the VLDB Endowment, Issue 16, 2023, Page(s) 2117-2131, ISSN 2150-8097
Publisher:
Proceedings VLDB Endowment
DOI:
10.14778/3598581.3598586
Author(s):
Xiao Luo, Xiongbin Kang, Alexander Schönhuth
Published in:
Frontiers in Genetics, Issue 13, 2022, ISSN 1664-8021
Publisher:
Frontiers Media
DOI:
10.3389/fgene.2022.868280
Author(s):
Pío Sierra, Richard Durbin
Published in:
Mobile DNA, Issue 15, 2024, ISSN 1759-8753
Publisher:
BioMed Central
DOI:
10.1186/s13100-024-00323-y
Author(s):
Zuzana Holesova, Ondrej Pös, Juraj Gazdarica, Marcel Kucharik, Jaroslav Budis, Michaela Hyblova, Gabriel Minarik, Tomas Szemes
Published in:
BMC Genomics, Issue 25, 2024, ISSN 1471-2164
Publisher:
BioMed Central
DOI:
10.1186/s12864-024-10267-5
Author(s):
Luca Parmigiani, Erik Garrison, Jens Stoye, Tobias Marschall, Daniel Doerr
Published in:
Bioinformatics, Issue 40, 2024, ISSN 1367-4811
Publisher:
Bioinformatics
DOI:
10.1093/bioinformatics/btae720
Author(s):
Nikolai Romashchenko, Benjamin Linard, Fabio Pardi, Eric Rivals
Published in:
Bioinformatics, Issue 39, 2024, ISSN 1367-4811
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btad692
Author(s):
Victoria R. Carr, Solon P. Pissis, Peter Mullany, Saeed Shoaie, David Gomez-Cabrero, David L. Moyes
Published in:
Microbial Genomics, Issue 9, 2023, ISSN 2057-5858
Publisher:
Microbial Genomics
DOI:
10.1099/mgen.0.000917
Author(s):
Gizem Taş, Timo Westerdijk, Eric Postma, null null, Wouter van Rheenen, Mark K Bakker, Kristel R van Eijk, Maarten Kooyman, Ahmad Al Khleifat, Alfredo Iacoangeli, Nicola Ticozzi, Johnathan Cooper-Knock, Marta Gromicho, Siddharthan Chandran, Karen E Morrison, Pamela J Shaw, John Hardy, Michael Sendtner, Thomas Meyer, Nazli Başak, Isabella Fogh, Adriano Chiò, Andrea Calvo, Elisabetta Pupillo, Gia
Published in:
Bioinformatics, Issue 40, 2024, ISSN 1367-4811
Publisher:
Bioinformatics
DOI:
10.1093/bioinformatics/btae326
Author(s):
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti
Published in:
BMC Bioinformatics, Issue 25, 2024, ISSN 1471-2105
Publisher:
BioMed Central
DOI:
10.1186/s12859-024-05958-5
Author(s):
Téo Lemane, Paul Medvedev, Rayan Chikhi, Pierre Peterlongo
Published in:
Bioinformatics Advances, Issue 2, 2022, ISSN 2635-0041
Publisher:
Oxford University Press
DOI:
10.1093/bioadv/vbac029
Author(s):
Panagiotis Charalampopoulos; Costas S. Iliopoulos; Tomasz Kociumaka; Solon P. Pissis; Jakub Radoszewski; Juliusz Straszyński
Published in:
Algorithmica, Issue 84, 2022, Page(s) 1418–1440, ISSN 1432-0541
Publisher:
Springer Science
DOI:
10.48550/arxiv.1807.11702
Author(s):
Grigorios Loukides, Solon P. Pissis, Michelle Sweering
Published in:
IEEE Transactions on Knowledge and Data Engineering, Issue 35, 2023, Page(s) 11093-11111, ISSN 1041-4347
Publisher:
Institute of Electrical and Electronics Engineers
DOI:
10.1109/tkde.2022.3231780
Author(s):
Golnaz Badkobeh and Panagiotis Charalampopoulos and Dmitry Kosolobov and Solon P. Pissis
Published in:
Theoretical Computer Science, Issue 922, 2022, Page(s) 271-282, ISSN 0304-3975
Publisher:
Elsevier BV
DOI:
10.1016/j.tcs.2022.04.029
Author(s):
Gaëtan Benoit, Sébastien Raguideau, Robert James, Adam M. Phillippy, Rayan Chikhi, Christopher Quince
Published in:
Nature Biotechnology, Issue 42, 2024, Page(s) 1378-1383, ISSN 1087-0156
Publisher:
Nature Publishing Group
DOI:
10.1038/s41587-023-01983-6
Author(s):
Sauer, Lena,; Cánovas, Rodrigo; Roche, Daniel,; Shams-Eldin, Hosam; Ravel, Patrice; Colinge, Jacques; Schwarz, Ralph T.; Mamoun, Choukri Ben; Rivals, Eric; Cornillot, Emmanuel
Published in:
Malaria Journal, Issue 22, 2023, Page(s) 27-46, ISSN 1475-2875
Publisher:
BioMed Central
DOI:
10.1186/s12936-022-04430-0
Author(s):
Mai Alzamel, Christopher Hampson, Costas S. Iliopoulos, Zara Lim, Solon Pissis, Dimitrios Vlachakis, Steven Watts
Published in:
Theoretical Computer Science, Issue 978, 2023, Page(s) 114182, ISSN 0304-3975
Publisher:
Elsevier BV
DOI:
10.1016/j.tcs.2023.114182
Author(s):
Jozef Sitarčík, Tomáš Vinař, Broňa Brejová, Werner Krampl, Jaroslav Budiš, Ján Radvánszky, Mária Lucká
Published in:
Bioinformatics, Issue 39, 2023, ISSN 1367-4811
Publisher:
Oxford University Press
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