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Adaptive immunity in prokaryotes: how Bacteria do not forgive and do not forget their enemies

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Publications

Complete Genome Sequences of Two T4-Like Escherichia coli Bacteriophages

Author(s): Ana Rita Costa, Stan J. J. Brouns, Franklin L. Nobrega
Published in: Genome Announcements, Issue 6/26, 2018, ISSN 2169-8287
DOI: 10.1128/genomea.00586-18

Bacteriophage DNA glucosylation impairs target DNA binding by type I and II but not by type V CRISPR–Cas effector complexes

Author(s): Marnix Vlot, Joep Houkes, Silke J A Lochs, Daan C Swarts, Peiyuan Zheng, Tim Kunne, Prarthana Mohanraju, Carolin Anders, Martin Jinek, John van der Oost, Mark J Dickman, Stan J J Brouns
Published in: Nucleic Acids Research, Issue 46/2, 2017, Page(s) 873-885, ISSN 0305-1048
DOI: 10.1093/nar/gkx1264

Cas4 Facilitates PAM-Compatible Spacer Selection during CRISPR Adaptation

Author(s): Sebastian N. Kieper, Cristóbal Almendros, Juliane Behler, Rebecca E. McKenzie, Franklin L. Nobrega, Anna C. Haagsma, Jochem N.A. Vink, Wolfgang R. Hess, Stan J.J. Brouns
Published in: Cell Reports, Issue 22/13, 2018, Page(s) 3377-3384, ISSN 2211-1247
DOI: 10.1016/j.celrep.2018.02.103

Complete Genome Sequence of the Escherichia coli Phage Ayreon

Author(s): Marnix Vlot, Franklin L. Nobrega, Che F. A. Wong, Yue Liu, Stan J. J. Brouns
Published in: Genome Announcements, Issue 6/2, 2018, ISSN 2169-8287
DOI: 10.1128/genomea.01354-17

Repetitive DNA Reeling by the Cascade-Cas3 Complex in Nucleotide Unwinding Steps

Author(s): Luuk Loeff, Stan J.J. Brouns, Chirlmin Joo
Published in: Molecular Cell, Issue 70/3, 2018, Page(s) 385-394.e3, ISSN 1097-2765
DOI: 10.1016/j.molcel.2018.03.031

Role of nucleotide identity in effective CRISPR target escape mutations

Author(s): Tim Künne, Yifan Zhu, Fausia da Silva, Nico Konstantinides, Rebecca E McKenzie, Ryan N Jackson, Stan JJ Brouns
Published in: Nucleic Acids Research, Issue 46/19, 2018, Page(s) 10395-10404, ISSN 0305-1048
DOI: 10.1093/nar/gky687

CRISPR-Cas: Adapting to change

Author(s): Simon A. Jackson, Rebecca E. McKenzie, Robert D. Fagerlund, Sebastian N. Kieper, Peter C. Fineran, Stan J. J. Brouns
Published in: Science, Issue 356/6333, 2017, Page(s) eaal5056, ISSN 0036-8075
DOI: 10.1126/science.aal5056

Molecular and Evolutionary Determinants of Bacteriophage Host Range

Author(s): Patrick A. de Jonge, Franklin L. Nobrega, Stan J.J. Brouns, Bas E. Dutilh
Published in: Trends in Microbiology, 2018, ISSN 0966-842X
DOI: 10.1016/j.tim.2018.08.006

Targeting mechanisms of tailed bacteriophages

Author(s): Franklin L. Nobrega, Marnix Vlot, Patrick A. de Jonge, Lisa L. Dreesens, Hubertus J. E. Beaumont, Rob Lavigne, Bas E. Dutilh, Stan J. J. Brouns
Published in: Nature Reviews Microbiology, Issue 16, 2018, Page(s) 760 - 773, ISSN 1740-1526
DOI: 10.1038/s41579-018-0070-8

Cas3-Derived Target DNA Degradation Fragments Fuel Primed CRISPR Adaptation

Author(s): Tim Künne, Sebastian N. Kieper, Jasper W. Bannenberg, Anne I.M. Vogel, Willem R. Miellet, Misha Klein, Martin Depken, Maria Suarez-Diez, Stan J.J. Brouns
Published in: Molecular Cell, Issue 63/5, 2016, Page(s) 852-864, ISSN 1097-2765
DOI: 10.1016/j.molcel.2016.07.011

An updated evolutionary classification of CRISPR–Cas systems

Author(s): Kira S. Makarova, Yuri I. Wolf, Omer S. Alkhnbashi, Fabrizio Costa, Shiraz A. Shah, Sita J. Saunders, Rodolphe Barrangou, Stan J. J. Brouns, Emmanuelle Charpentier, Daniel H. Haft, Philippe Horvath, Sylvain Moineau, Francisco J. M. Mojica, Rebecca M. Terns, Michael P. Terns, Malcolm F. White, Alexander F. Yakunin, Roger A. Garrett, John van der Oost, Rolf Backofen, Eugene V. Koonin
Published in: Nature Reviews Microbiology, Issue 13/11, 2015, Page(s) 722-736, ISSN 1740-1526
DOI: 10.1038/nrmicro3569

CRISPR interference and priming varies with individual spacer sequences

Author(s): Chaoyou Xue, Arun S. Seetharam, Olga Musharova, Konstantin Severinov, Stan J. J. Brouns, Andrew J. Severin, Dipali G. Sashital
Published in: Nucleic Acids Research, Issue 43/22, 2015, Page(s) 10831-10847, ISSN 0305-1048
DOI: 10.1093/nar/gkv1259

CRISPR sabotage

Author(s): John van der Oost, Stan J. J. Brouns
Published in: Genome Biology, Issue 16/1, 2015, Page(s) 1-3, ISSN 1474-760X
DOI: 10.1186/s13059-015-0820-0