Project description
Early molecular diagnosis of aquaculture pathogens
Aquaculture is one of the world’s fastest-growing food sectors and an integral component of Europe’s bioeconomy. Without fish farming, there would not be enough fish to feed the world population. However, farmed fish are vulnerable to disease. This makes early diagnosis a priority. The EU-funded AQUASENSE project will develop a new biosensor for early molecular diagnosis of aquaculture pathogens and to evaluate the use of third-generation sequencing to monitor potential reservoirs of pathogens. Using turbot aquaculture as a study case, the project will test its device for the detection of pathogens in turbot. The aim will be to allow more targeted treatments and reduce mortality and the use of antibiotics.
Objective
The aquaculture industry is essential to meet the dietary needs of the growing world population and an important contributor to the European economy and to the people’s health and welfare. However, its expansion has been limited by the great variety of diseases that affect farmed species and cause great economic losses. There is an urgent need to find new methodologies that allow cost-effective and early-detection that can be easily applied in decentralized settings or points-of-care. The main goal of AQUASENSE is the development of a new biosensor for early molecular diagnosis of aquaculture pathogens and to evaluate the use of third generation sequencing to monitor potential reservoirs of pathogens. To perform this, the turbot aquaculture will be used as a study case. A miniaturized device based on microscale solid phase extraction (µSPE) and microfluidics will be developed and optimized to perform universal highly efficient DNA extraction and purification from aquaculture samples. Then this system will be integrated with a novel biosensing module, based on isothermal amplification and CRISPR/Cas system, to develop a micro total analysis system (µTAS) suitable for resource-limited analysis. This device will be evaluated for the detection of two of the most problematic pathogens in turbot. In parallel, a miniaturized nanopore sequencer will be used to monitor the microbiome present in the samples and the potential reservoirs of pathogens, with the aid of the universal highly efficient DNA extraction device. This technology will allow more targeted treatments and reduce mortality and the use of antibiotics, improving the profitability of the sector. These objectives fit with important goals included in the Farm to Fork European Strategy (European Green Deal), such as reduce dependency on antimicrobials, improve the knowledge about microbiome and reach a more sustainable aquaculture production, all of them aimed at achieving a robust and resilient food system.
Fields of science (EuroSciVoc)
CORDIS classifies projects with EuroSciVoc, a multilingual taxonomy of fields of science, through a semi-automatic process based on NLP techniques. See: The European Science Vocabulary.
CORDIS classifies projects with EuroSciVoc, a multilingual taxonomy of fields of science, through a semi-automatic process based on NLP techniques. See: The European Science Vocabulary.
- engineering and technology electrical engineering, electronic engineering, information engineering electronic engineering sensors biosensors
- agricultural sciences agriculture, forestry, and fisheries fisheries
- engineering and technology environmental biotechnology biosensing
- natural sciences biological sciences genetics DNA
- social sciences economics and business economics sustainable economy
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Keywords
Project’s keywords as indicated by the project coordinator. Not to be confused with the EuroSciVoc taxonomy (Fields of science)
Project’s keywords as indicated by the project coordinator. Not to be confused with the EuroSciVoc taxonomy (Fields of science)
Programme(s)
Multi-annual funding programmes that define the EU’s priorities for research and innovation.
Multi-annual funding programmes that define the EU’s priorities for research and innovation.
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H2020-EU.1.3. - EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions
MAIN PROGRAMME
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H2020-EU.1.3.2. - Nurturing excellence by means of cross-border and cross-sector mobility
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Topic(s)
Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.
Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.
Funding Scheme
Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.
Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.
MSCA-IF - Marie Skłodowska-Curie Individual Fellowships (IF)
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Call for proposal
Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.
Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.
(opens in new window) H2020-MSCA-IF-2020
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Net EU financial contribution. The sum of money that the participant receives, deducted by the EU contribution to its linked third party. It considers the distribution of the EU financial contribution between direct beneficiaries of the project and other types of participants, like third-party participants.
4715-330 Braga
Portugal
The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.