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microRNA assay system based on self-assembled nanoscale DNA origami arrays

Project description

Novel microRNA assay system

MicroRNAs (miRNAs) represent potential biomarkers for cancer diagnosis, prognosis and treatment. The quantification of miRNAs is important for early cancer detection and progression monitoring. The current techniques for miRNA detection based on DNA amplification are time-consuming, have low multiplexing capacity and lack absolute quantification. The EU-funded miRanDa project proposes to develop a miRNA assay system based on self-assembled nanoscale DNA origami arrays for the simultaneous detection of multiple miRNA targets from breast cancer cells and plasma by using a super-resolution technique: point accumulation for imaging in nanoscale topography, termed DNA-PAINT. This assay can be further developed and adapted to the rapid, specific, sensitive and multiple detections of other nucleic acid species.

Objective

MicroRNAs (miRNAs) are potential biomarkers for cancer diagnosis, prognosis and treatment monitoring. Specific detection and absolute quantification of miRNAs is of clinical relevance for early cancer detection and monitoring progression. The currently available techniques for miRNA detection based on DNA amplification are limited by lack of absolute quantification, low multiplexing capacity and time consumption. Here, I propose to develop a miRNA assay system based on self-assembled nanoscale DNA origami arrays (miRanDa) for the simultaneous detection of multiple miRNA targets from breast cancer cells and plasma by using DNA-PAINT, state-of-art super resolution technique. The formation of specifically configured finite 2D lattices of self-assembled DNA origami structures based on sticky-end hybridization will further improve the capacity of the detection system beyond the currently available techniques. This assay can be further developed and adapted to the rapid, specific, sensitive and multiple detection of additional nucleic acid species, such as ctDNA, mRNA or lncRNA.

Fields of science (EuroSciVoc)

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Topic(s)

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Funding Scheme

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MSCA-IF - Marie Skłodowska-Curie Individual Fellowships (IF)

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Call for proposal

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(opens in new window) H2020-MSCA-IF-2019

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Coordinator

UNIVERSITE DE FRIBOURG
Net EU contribution

Net EU financial contribution. The sum of money that the participant receives, deducted by the EU contribution to its linked third party. It considers the distribution of the EU financial contribution between direct beneficiaries of the project and other types of participants, like third-party participants.

€ 203 149,44
Address
AVENUE DE L EUROPE 20
1700 Fribourg
Switzerland

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Region
Schweiz/Suisse/Svizzera Espace Mittelland Fribourg / Freiburg
Activity type
Higher or Secondary Education Establishments
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Total cost

The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.

€ 203 149,44
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