Neural Spectral Image Decoding

Project Information

NEURAL SPICING

Grant agreement ID: 101002198

DOI

10.3030/101002198

EC signature date 22 April 2021

Start date 1 May 2021

End date 30 April 2026

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 999 975,00

EU contribution

€ 1 999 975,00

Coordinated by

DEUTSCHES KREBSFORSCHUNGSZENTRUM HEIDELBERG
Germany

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Open Research Data Pilot (1)

Data management plan

Publications

Peer reviewed articles (7)

Efficient Photoacoustic Image Synthesis with Deep Learning

Author(s): Tom Rix; Kris K. Dreher; Jan-Hinrich Nölke; Melanie Schellenberg; Minu D. Tizabi; Alexander Seitel; Lena Maier-Hein
Published in: Sensors, Issue 23 (16), 2023, Page(s) 7085 ff, ISSN 1424-8220
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/s23167085

Semantic segmentation of multispectral photoacoustic images using deep learning

Author(s): Melanie Schellenberg, Kris K. Dreher, Niklas Holzwarth, Fabian Isensee, Annika Reinke, Nicholas Schreck, Alexander Seitel, Minu D. Tizabi, Lena Maier-Hein, and Janek Gröhl
Published in: Photoacoustics, Issue 26, 2022, ISSN 2213-5979
Publisher: Elsevier GmbH
DOI: 10.1016/j.pacs.2022.100341

Photoacoustic image synthesis with generative adversarial networks

Author(s): Melanie Schellenberg, Janek Gröhl, Kris K. Dreher, Jan-Hinrich Nölke, Niklas Holzwarth, Minu D. Tizabi, Alexander Seitel, Lena Maier-Hein,
Published in: Photoacoustics, Issue 28, 2022, ISSN 2213-5979
Publisher: Elsevier GmbH
DOI: 10.1016/j.pacs.2022.100402

Spectral imaging enables contrast agent-free real-time ischemia monitoring in laparoscopic surgery

Author(s): Leonardo Ayala; Tim J. Adler; Silvia Seidlitz; Sebastian Wirkert; Christina Engels; Alexander Seitel; Jan Sellner; Alexey Aksenov; Matthias Bodenbach; Pia Bader; Sebastian Baron; Anant Vemuri; Manuel Wiesenfarth; Nicholas Schreck; Diana Mindroc; Minu Tizabi; Sebastian Pirmann; Brittaney Everitt; Annette Kopp-Schneider; Dogu Teber; Lena Maier-Hein
Published in: Science Advances, Issue 10(9), 2023, ISSN 2375-2548
Publisher: American Association for the Advancement of Science (AAAS)
DOI: 10.1101/2022.03.08.22271465

SIMPA: an open-source toolkit for simulation and image processing for photonics and acoustics

Author(s): Janek Gröhl; Kris K. Dreher; Melanie Schellenberg; Tom Rix; Niklas Holzwarth; Patricia Vieten; Leonardo Ayala; Sarah E. Bohndiek; Alexander Seitel; Lena Maier-Hein
Published in: Journal of Biomedical Optics, Issue 8, 2022, ISSN 1083-3668
Publisher: S P I E - International Society for Optical Engineering
DOI: 10.1117/1.jbo.27.8.083010

ICG-augmented hyperspectral imaging for visualization of intestinal perfusion compared to conventional ICG fluorescence imaging: An experimental study.

Author(s): Studier-Fischer, A., Schwab, F. M., Rees, M., Seidlitz, S., Sellner, J., Özdemir, B., Ayala, L., Odenthal, J., Knoedler, S., Kowalewski, K.-F., Haney, C. M., Dietrich, M., Salg, G. A., Kenngott, H. G., Müller-Stich, B. P., Maier-Hein, L., & Nickel, F.
Published in: International Journal of Surgery, Issue 109(12), 2023, ISSN 1743-9191
Publisher: Surgical Association
DOI: 10.1097/js9.0000000000000706

HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs

Author(s): Alexander Studier-Fischer, Silvia Seidlitz, Jan Sellner, Marc Bressan, Berkin Özdemir, Leonardo Ayala, Jan Odenthal, Samuel Knoedler, Karl-Friedrich Kowalewski, Caelan Max Haney, Gabriel Salg, Maximilian Dietrich, Hannes Kenngott, Ines Gockel, Thilo Hackert, Beat Peter Müller-Stich, Lena Maier-Hein & Felix Nickel
Published in: Scientific Data, Issue 10(414), 2023, ISSN 2052-4463
Publisher: Springer Nature
DOI: 10.1038/s41597-023-02315-8

Other (4)

Application-driven Validation of Posteriors in Inverse Problems

Author(s): Tim J. Adler, Jan-Hinrich Nölke, Annika Reinke, Minu Dietlinde Tizabi, Sebastian Gruber, Dasha Trofimova, Lynton Ardizzone, Paul F. Jaeger, Florian Buettner, Ullrich Köthe, Lena Maier-Hein
Published in: 2023
Publisher: arXiv
DOI: 10.48550/arxiv.2309.09764

Understanding metric-related pitfalls in image analysis validation

Author(s): Annika Reinke, Minu D. Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew Blaschko, Florian Buettner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian
Published in: 2023
Publisher: arXiv
DOI: 10.48550/arxiv.2302.01790

Metrics reloaded: Recommendation for image analysis validation

Author(s): Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D. Tizabi, Florian Buettner, Evangelia Christodoulou, Ben Glocker, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, A. Emre Kavur, Carole H. Sudre, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Tim Rädsch, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arrie
Published in: 2023
Publisher: arXiv
DOI: 10.48550/arxiv.2206.01653

Machine learning-based analysis of hyperspectral images for automated sepsis diagnosis

Author(s): Dietrich, Maximilian; Seidlitz, Silvia; Schreck, Nicholas; Wiesenfarth, Manuel; Godau, Patrick; Tizabi, Minu; Sellner, Jan; Marx, Sebastian; Kn��dler, Samuel; Allers, Michael M.; Ayala, Leonardo; Schmidt, Karsten; Brenner, Thorsten; Studier-Fischer, Alexander; Nickel, Felix; M��ller-Stich, Beat P.; Kopp-Schneider, Annette; Weigand, Markus A.; Maier-Hein, Lena
Published in: arXiv, 2021
Publisher: arXiv
DOI: 10.48550/arxiv.2106.08445

Conference proceedings (2)

Unsupervised Domain Transfer with Conditional Invertible Neural Networks

Author(s): Kris K. Dreher, Leonardo Ayala, Melanie Schellenberg, Marco Hübner, Jan-Hinrich Nölke, Tim J. Adler, Silvia Seidlitz, Jan Sellner, Alexander Studier-Fischer, Janek Gröhl, Felix Nickel, Ullrich Köthe, Alexander Seitel, Lena Maier-Hein
Published in: Lecture Notes in Computer Science, Issue 14220, 2023, ISBN 978-3-031-43907-0
Publisher: Springer Nature
DOI: 10.1007/978-3-031-43907-0_73

Semantic segmentation of surgical hyperspectral images under geometric domain shifts

Author(s): Sellner, Jan; Seidlitz, Silvia; Studier-Fischer, Alexander; Motta, Alessandro; Özdemir, Berkin; Müller-Stich, Beat Peter; Nickel, Felix; Maier-Hein, Lena
Published in: Lecture Notes in Computer Science, Issue 14228, 2023, ISBN 978-3-031-43996-4
Publisher: Springer Nature
DOI: 10.1007/978-3-031-43996-4_59

Non-peer reviewed articles (2)

Spectral Organ Fingerprints For Machine Learning-Based Intraoperative Tissue Classification With Hyperspectral Imaging

Author(s): Alexander Studier-Fischer, Silvia Seidlitz, Jan Sellner, Berkin Özdemir, Manuel Wiesenfarth, Leonardo Ayala, Jan Odenthal, Samuel Knödler, Karl-Friedrich Kowalewski, Caelan Max Haney, Isabella Camplisson, Maximilian Dietrich, Karsten Schmidt, Gabriel Alexander Salg, Hannes Götz Kenngott, Tim Julian Adler, Nicholas Schreck, Annette Kopp-Schneider, Klaus Maier-Hein, Lena Maier-Hein, Beat Peter M
Published in: Scientific Reports, Issue 12, 2022, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-022-15040-w

Robust deep learning-based semantic organ segmentation in hyperspectral images

Author(s): Silvia Seidlitz, Jan Sellner, Jan Odenthal, Berkin Özdemir, Alexander Studier-Fischer, Samuel Knödler, Leonardo Ayala, Tim Adler, Hannes G Kenngott, Minu Tizabi, Martin Wagner, Felix Nickel, Beat P Müller-Stich, Lena Maier-Hein
Published in: Medical Image Analysis, Issue 80, 2022, ISSN 1361-8415
Publisher: Elsevier BV
DOI: 10.1016/j.media.2022.102488