Energy Landscapes from Cryo-EM and Simulations

Project Information

EnLaCES

Grant agreement ID: 101024130

DOI

10.3030/101024130

Project closed

EC signature date 14 April 2021

Start date 1 October 2021

End date 30 September 2023

Funded under

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Total cost

€ 160 932,48

EU contribution

€ 160 932,48

Coordinated by

AGENCIA ESTATAL CONSEJO SUPERIOR DE INVESTIGACIONES CIENTIFICAS
Spain

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (6)

Computational biophysics meets cryo-EM revolution in the search for the functional dynamics of biomolecular systems

Author(s): Mauricio G. S. Costa, Mert Gur, James M. Krieger, Ivet Bahar
Published in: Wiley Interdisciplinary Reviews: Computational Molecular Science, 2023, Page(s) e1689, ISSN 1759-0884
Publisher: Wiley Periodicals, Inc.
DOI: 10.1002/wcms.1689

Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials

Author(s): D. Herreros, R. R. Lederman, J. M. Krieger, A. Jiménez-Moreno, M. Martínez, D. Myška, D. Strelak, J. Filipovic, C. O. S. Sorzano, J. M. Carazo
Published in: Nature Communications, Issue 14, 2023, Page(s) 154, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-35791-y

Structural mobility tunes signalling of the GluA1 AMPA glutamate receptor

Author(s): Danyang Zhang, Josip Ivica, James M. Krieger, Hinze Ho, Keitaro Yamashita, Imogen Stockwell, Rozbeh Baradaran, Ondrej Cais, Ingo H. Greger
Published in: Nature, Issue 621, 2023, Page(s) 877–882, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-023-06528-0

Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine Enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing

Author(s): James M. Krieger, Carlos Oscar S. Sorzano, Jose Maria Carazo
Published in: International Journal of Molecular Sciences, Issue 24, 2023, Page(s) 14245, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms241814245

Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM

Author(s): D. Herreros, J. M. Krieger, Y. Fonseca, P. Conesa, M. Harastani, R. Vuillemot, I. Hamitouche, R. Serrano Gutiérrez, M. Gragera, R. Melero, S. Jonic, J. M. Carazo, C. O. Sorzano
Published in: Acta Crystallographica Section D: Structural Biology, Issue 79, 2023, Page(s) 569-584, ISSN 2059-7983
Publisher: International Union of Crystallography (co-published with Wiley)
DOI: 10.1107/s2059798323004497

The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation

Author(s): Tiziana Ginex, Clara Marco-Marín, Miłosz Wieczór, Carlos P. Mata, James Krieger, Paula Ruiz-Rodriguez, Maria Luisa López-Redondo, Clara Francés-Gómez, Roberto Melero, Carlos Óscar Sánchez-Sorzano, Marta Martínez, Nadine Gougeard, Alicia Forcada-Nadal, Sara Zamora-Caballero, Roberto Gozalbo-Rovira, Carla Sanz-Frasquet, Rocío Arranz, Jeronimo Bravo, Vicente Rubio, Alberto Marina, The IBV-C
Published in: PLOS Pathogens, Issue 18, 2022, Page(s) e1010995, ISSN 1553-7366
Publisher: Public Library of Science
DOI: 10.1371/journal.ppat.1010995