Evolutionary Cellular Computing for Environmental Synthetic Biology

Project Information

ECCO

Grant agreement ID: 101044360

DOI

10.3030/101044360

EC signature date 21 April 2022

Start date 1 October 2022

End date 30 September 2027

Funded under

• European Research Council (ERC)

Total cost

€ 2 131 809,00

EU contribution

€ 2 131 809,00

Coordinated by

AGENCIA ESTATAL CONSEJO SUPERIOR DE INVESTIGACIONES CIENTIFICAS
Spain

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (15)

pBLAM1-x: standardized transposon tools for high-throughput screening

Author(s): Alejaldre, L., Anhel, A. M., Goñi-Moreno, Á.
Published in: Synthetic Biology, 2023, ISSN 2397-7000
Publisher: Oxford Academic
DOI: 10.1093/synbio/ysad012

Pressure‐dependent growth controls 3D architecture of Pseudomonas putida microcolonies

Author(s): Kim, J., de Lorenzo, V., Goñi‐Moreno, Á
Published in: Environmental Microbiology Reports, 2023, ISSN 1758-2229
Publisher: Wiley
DOI: 10.1111/1758-2229.13182

Turing patterns with cellular computers

Author(s): Lewis Grozinger, Ángel Goñi-Moreno
Published in: Cell Systems, Issue 15, 2025, ISSN 2405-4712
Publisher: Elsevier BV
DOI: 10.1016/J.CELS.2024.11.015

Automated workflow for genotyping individual transposon library variants

Author(s): Lorea Alejaldre, Ana-Mariya Anhel, Lewis Grozinger, Ángel Goñi-Moreno
Published in: BMC Methods, Issue 3, 2026, ISSN 3004-8729
Publisher: Springer Science and Business Media LLC
DOI: 10.1186/S44330-025-00054-3

Construction of a syntrophic <i>Pseudomonas putida</i> consortium with reciprocal substrate processing

Author(s): Barbora Burýšková; Jesús Miró-Bueno; Barbora Popelářová; Barbora Gavendová; Ángel Goñi-Moreno; Pavel Dvořák
Published in: Synthetic Biology, 2025, ISSN 2397-7000
Publisher: Oxford Academic
DOI: 10.1093/SYNBIO/YSAF012

Dynamics of genetic circuits in Pseudomonas protegens

Author(s): Juan Rico, Pablo Japón, Luis M. Rubio, Ángel Goñi-Moreno
Published in: Cell Systems, Issue 17, 2026, ISSN 2405-4712
Publisher: Elsevier BV
DOI: 10.1016/J.CELS.2025.101513

Genetic designs for stochastic and probabilistic biocomputing

Author(s): Lewis Grozinger, Jesús Miró-Bueno, Ángel Goñi-Moreno
Published in: Physical Review E, Issue 111, 2025, ISSN 2470-0045
Publisher: American Physical Society (APS)
DOI: 10.1103/PHYSREVE.111.054412

Workflow to Select Functional Promoter DNA Baits and Screen Arrayed Gene Libraries in Yeast

Author(s): Fañanás‐Pueyo, I., Anhel, A. M., Goñi‐Moreno, Á., Oñate‐Sánchez, L.
Published in: Current Protocols, 2024, ISSN 2691-1299
Publisher: Wiley
DOI: 10.1002/cpz1.70059

Standardized Quorum Sensing Tools for Gram-Negative Bacteria

Author(s): Paula Múgica-Galán, Jesús Miró-Bueno, Ángeles Hueso-Gil, Pablo Japón, Ángel Goñi-Moreno
Published in: ACS Synthetic Biology, Issue 14, 2025, ISSN 2161-5063
Publisher: American Chemical Society (ACS)
DOI: 10.1021/ACSSYNBIO.5C00036

GENETTA: a Network-Based Tool for the Analysis of Complex Genetic Designs

Author(s): Crowther, M., Wipat, A., Goñi-Moreno, Á
Published in: ACS Synthetic Biology, 2023, ISSN 2161-5063
Publisher: American Chemical Society
DOI: 10.1021/acssynbio.3c00333

Exploring the computing power of microbes that shapes the environment

Author(s): Crislaine KS Rocha, Ángeles Hueso-Gil, Lorea Alejaldre, Juan Rico, Paula Múgica-Galán, Ángel Goñi-Moreno
Published in: Current Opinion in Microbiology, Issue 89, 2026, ISSN 1369-5274
Publisher: Elsevier BV
DOI: 10.1016/J.MIB.2025.102700

Why cellular computations challenge our design principles

Author(s): Lewis Grozinger, Bruno Cuevas-Zuviría, Ángel Goñi-Moreno
Published in: Seminars in Cell &amp; Developmental Biology, Issue 171, 2025, ISSN 1084-9521
Publisher: Elsevier BV
DOI: 10.1016/J.SEMCDB.2025.103616

SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes

Author(s): Martínez-García, E., Fraile, S., Algar, E., Aparicio, T., Velázquez, E., Calles, B., ... de Lorenzo, V.
Published in: Nucleic Acids Research, 2022, ISSN 1362-4962
Publisher: Oxford Academic
DOI: 10.1093/nar/gkac1059

Biocomputation: Moving Beyond Turing with Living Cellular Computers

Author(s): Goñi-Moreno, Á
Published in: Communications of the ACM, 2024, ISSN 0001-0782
Publisher: Association for Computing Machinary, Inc.
DOI: 10.1145/3635470

The Laboratory Automation Protocol (LAP) Format and Repository: A Platform for Enhancing Workflow Efficiency in Synthetic Biology

Author(s): Anhel, A. M., Alejaldre, L., Goñi-Moreno, Á.
Published in: ACS Synthetic BIology, 2023, ISSN 2161-5063
Publisher: American Chemical Society
DOI: 10.1021/acssynbio.3c00397

Conference proceedings (1)

Parameter Evolvability in Gene Expression Models Drives Phenotypic Adaptation

Author(s): Pablo Japón, Jesús Miró-Bueno, Ángel Goñi-Moreno
Published in: ALIFE 2025: Ciphers of Life: Proceedings of the Artificial Life Conference 2025, Issue 37, 2025
Publisher: MIT Press
DOI: 10.1162/ISAL.A.869