Coding for DNA Storage

Project Information

DNAStorage

Grant agreement ID: 101045114

DOI

10.3030/101045114

EC signature date 10 May 2022

Start date 1 June 2022

End date 31 May 2027

Funded under

• European Research Council (ERC)

Total cost

€ 1 999 096,00

EU contribution

€ 1 999 096,00

Coordinated by

TECHNION - ISRAEL INSTITUTE OF TECHNOLOGY
Israel

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (5)

Error-Correcting Codes for Nanopore Sequencing

Author(s): Anisha Banerjee; Yonatan Yehezkeally; Antonia Wachter-Zeh; Eitan Yaakobi
Published in: IEEE Transactions on Information Theory, 2024, ISSN 1557-9654
Publisher: IEEE
DOI: 10.1109/TIT.2024.3380615

Scientific Reports

Author(s): Omer Sabary, Alexander Yucovich, Guy Shapira, Eitan Yaakobi
Published in: Scientific Reports, 2024, ISSN 2045-2322
Publisher: Nature
DOI: 10.1038/s41598-024-51730-3

Sequence Design and Reconstruction Under the Repeat Channel in Enzymatic DNA Synthesis

Author(s): Roy Shafir; Omer Sabary; Leon Anavy; Eitan Yaakobi; Zohar Yakhini
Published in: IEEE Transactions on Communications, 2023, ISSN 1558-0857
Publisher: IEEE
DOI: 10.1109/TCOMM.2023.3330848

GradHC: highly reliable gradual hash-based clustering for DNA storage systems

Author(s): Dvir Ben Shabat, Adar Hadad, Avital Boruchovsky, Eitan Yaakobi
Published in: Bioinformatics, 2024, ISSN 1367-4811
Publisher: Bioinformatics
DOI: 10.1093/bioinformatics/btae274

Bee Identification Problem for DNA Strands

Author(s): Johan Chrisnata, Han Mao Kiah, Alexander Vardy , and Eitan Yaakobi
Published in: IEEE Journal on Selected Areas in Information Theory, 2023, ISSN 2641-8770
Publisher: IEEE Journal on Selected Areas in Information Theory
DOI: 10.1109/JSAIT.2023.3294423

Conference proceedings (7)

On the Capacity of DNA Labeling

Author(s): Dganit Hanania; Daniella Bar-Lev; Yevgeni Nogin; Yoav Shechtman; Eitan Yaakobi
Published in: 2023 IEEE International Symposium on Information Theory (ISIT), 2023, ISSN 2157-8117
Publisher: 2023 IEEE International Symposium on Information Theory (ISIT)
DOI: 10.1109/ISIT54713.2023.10206769

DNA-Correcting Codes: End-to-end Correction in DNA Storage Systems

Author(s): Avital Boruchovsky; Daniella Bar-Lev; Eitan Yaakobi
Published in: 2023 IEEE International Symposium on Information Theory (ISIT), 2023, ISSN 2157-8117
Publisher: IEEE
DOI: 10.1109/ISIT54713.2023.1020653610.1109/ISIT54713.2023.10206536

Cover Your Bases: How to Minimize the Sequencing Coverage in DNA Storage Systems

Author(s): Daniella Bar-Lev; Omer Sabary; Ryan Gabrys; Eitan Yaakobi
Published in: 2023 IEEE International Symposium on Information Theory (ISIT), 2023, ISSN 2157-8117
Publisher: IEEE
DOI: 10.1109/ISIT54713.2023.10206882

DNA Synthesis Using Shortmers

Author(s): Maria Abu-Sini; Andreas Lenz; Eitan Yaakobi
Published in: 2023 IEEE International Symposium on Information Theory (ISIT), 2023, ISSN 2157-8117
Publisher: IEEE
DOI: 10.1109/ISIT54713.2023.10206609

Coding for IBLTs with Listing Guarantees

Author(s): Daniella Bar-Lev; Avi Mizrahi; Tuvi Etzion; Ori Rottenstreich; Eitan Yaakobi
Published in: 2023 IEEE International Symposium on Information Theory (ISIT), 2023, ISSN 2157-8117
Publisher: IEEE
DOI: 10.1109/ISIT54713.2023.10206563

On the Intersection of Multiple Insertion (or Deletion) Balls and its Application to List Decoding Under the Reconstruction Model

Author(s): Maria Abu-Sini; Eitan Yaakobi
Published in: IEEE Transactions on Information Theory, 2023, ISSN 1557-9654
Publisher: IEEE
DOI: 10.1109/TIT.2023.3319608

Data-Driven Bee Identification for DNA Strands

Author(s): Shubhransh Singhvi; Avital Boruchovsky; Han Mao Kiah; Eitan Yaakobi
Published in: 2023 IEEE International Symposium on Information Theory (ISIT), 2023, ISSN 2157-8117
Publisher: 2023 IEEE International Symposium on Information Theory (ISIT)
DOI: 10.1109/ISIT54713.2023.10206637