Computational Microscopy of Cells

Project Information

COMP-O-CELL

Grant agreement ID: 101053661

DOI

10.3030/101053661

EC signature date 25 May 2022

Start date 1 September 2022

End date 31 August 2027

Funded under

• European Research Council (ERC)

Total cost

€ 2 498 148,00

EU contribution

€ 2 498 148,00

Coordinated by

RIJKSUNIVERSITEIT GRONINGEN
Netherlands

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Data Management Plan (1)

Data Management Plan

Drafting of Data Management Plan

Publications

Peer reviewed articles (6)

Bartender: Martini 3 Bonded Terms via Quantum Mechanics-based Molecular Dynamics

Author(s): Gilberto P. Pereira; Riccardo Alessandri; Moisés Domínguez; Rocío Araya-Osorio; Linus Grünewald; Luís Borges-Araújo; Sangwook Wu; Siewert J. Marrink; Paulo C. T. Souza; Raul Mera-Adasme
Published in: JCTC, 2024, ISSN 1549-9626
Publisher: ACS
DOI: 10.26434/chemrxiv-2024-62kh1-v2

Dynamics of chromosome organization in a minimal bacterial cell

Author(s): Benjamin R. Gilbert; Zane R. Thornburg; Troy A. Brier; Jan A. Stevens; Fabian Grünewald; John E. Stone; John E. Stone; Siewert J. Marrink; Zaida Luthey-Schulten; Zaida Luthey-Schulten; Zaida Luthey-Schulten
Published in: Frontiers in Cell and Developmental Biology, Vol 11 (2023), 2023, ISSN 2296-2646
Publisher: Frontiers Media
DOI: 10.1016/j.bpj.2023.11.1996

Martini 3 Coarse-Grained Force Field for Cholesterol

Author(s): Luís Borges-Araújo; Ana C. Borges-Araújo; Tugba Nur Ozturk; Daniel P. Ramirez-Echemendia; Balázs Fábián; Timothy S. Carpenter; Sebastian Thallmair; Jonathan Barnoud; Helgi I. Ingólfsson; Gerhard Hummer; D. Peter Tieleman; Siewert J. Marrink; Paulo C. T. Souza; Manuel N. Melo
Published in: "Journal of Chemical Theory and Computation, 2023, 19 (20), pp.7387-7404. ⟨10.1021/acs.jctc.3c00547⟩", 2023, ISSN 1549-9626
Publisher: ACS
DOI: 10.26434/chemrxiv-2023-lh7bq

Automatic Optimization of Lipid Models in the Martini Force Field Using <i>SwarmCG</i>

Author(s): Charly Empereur-mot; Kasper B. Pedersen; Riccardo Capelli; Martina Crippa; Cristina Caruso; Mattia Perrone; Paulo C. T. Souza; Siewert J. Marrink; Giovanni M. Pavan
Published in: JCIM, 2023, ISSN 1549-9626
Publisher: ACS
DOI: 10.1021/acs.jcim.3c00530

Molecular dynamics simulation of an entire cell

Author(s): Stevens et al.
Published in: Frontiers in Chemistry, 2023, ISSN 2296-2646
Publisher: frontiers
DOI: 10.3389/fchem.2023.1106495

Pragmatic Coarse-Graining of Proteins: Models and Applications

Author(s): Borges-Araújo, Luís; Patmanidis, Ilias; Singh, Akhil P.; Santos, Lucianna H. S.; Sieradzan, Adam K.; Vanni, Stefano; Czaplewski, Cezary; Pantano, Sergio; Shinoda, Wataru; Monticelli, Luca; Liwo, Adam; Marrink, Siewert J.; Souza, Paulo C. T.
Published in: JCTC, 2023, ISSN 1549-9626
Publisher: ACS
DOI: 10.1021/acs.jctc.3c00733