A European Health Data Toolbox for Enhancing Cardiology Data Interoperability, Reusability and Privacy

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Publications

Cardiac magnetic resonance markers of pre-clinical hypertrophic and dilated cardiomyopathy in genetic variant carriers

Auteurs: Philip M. Croon, Marion van Vugt, Cornelis P. Allaart, Bram Ruijsink, Perry M. Elliott, Folkert W. Asselbergs, Rohan Khera, Connie R. Bezzina, Michiel Winter, A. Floriaan Schmidt
Publié dans: BMC Medicine, Numéro 23, 2025, ISSN 1741-7015
Éditeur: Springer Science and Business Media LLC
DOI: 10.1186/S12916-025-04226-4

A scalable and transparent data pipeline for AI-enabled health data ecosystems

Auteurs: Tuncay Namli, Ali Anıl Sınacı, Suat Gönül, Cristina Ruiz Herguido, Patricia Garcia-Canadilla, Adriana Modrego Muñoz, Arnau Valls Esteve, Gökçe Banu Laleci Ertürkmen
Publié dans: Frontiers in Medicine, Numéro 11, 2024, ISSN 2296-858X
Éditeur: Frontiers Media SA
DOI: 10.3389/FMED.2024.1393123

Five critical quality criteria for artificial intelligence-based prediction models

Auteurs: Florien S van Royen, Folkert W Asselbergs, Fernando Alfonso, Panos Vardas, and Maarten van Smeden
Publié dans: European Heart Journal, Numéro 44, 2023, ISSN 0195-668X
Éditeur: Oxford University Press
DOI: 10.1093/eurheartj/ehad727

Digital twins: reimagining the future of cardiovascular risk prediction and personalised care

Auteurs: Katarzyna Dziopa, Karim Lekadir, Pim van der Harst, Folkert W. Asselbergs
Publié dans: Hellenic Journal of Cardiology, Numéro 81, 2024, ISSN 1109-9666
Éditeur: Elsevier BV
DOI: 10.1016/J.HJC.2024.06.001

The CODE-EHR global framework: lifting the veil on health record data

Auteurs: Folkert W Asselbergs; Dipak Kotecha
Publié dans: European Heart Journal, Numéro 44, 2023, ISSN 0195-668X
Éditeur: Oxford University Press
DOI: 10.1093/eurheartj/ehad424

A textual dataset of de-identified health records in Spanish and Catalan for medical entity recognition and anonymization

Auteurs: Salvador Lima-López, Eulàlia Farré-Maduell, Luis Gasco, Jan Rodríguez-Miret, Santiago Frid, Xavier Pastor, Xavier Borrat, Martin Krallinger
Publié dans: Scientific Data, Numéro 12, 2025, ISSN 2052-4463
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/S41597-025-05320-1

BMC Medicine

Auteurs: Philip M Croon; Marion van Vugt; Cornelis P Allaart; Bram Ruijsink; Perry M Elliott; Folkert W Asselbergs; Rohan Khera; Connie R Bezzina; Michiel Winter; Amand Floriaan Schmidt
Publié dans: BMC Medicine, 2025, ISSN 1741-7015
Éditeur: BioMed Central
DOI: 10.1101/2024.11.15.24317368

A review of evaluation approaches for explainable AI with applications in cardiology

Auteurs: Ahmed M. Salih, Ilaria Boscolo Galazzo, Polyxeni Gkontra, Elisa Rauseo, Aaron Mark Lee, Karim Lekadir, Petia Radeva, Steffen E. Petersen, Gloria Menegaz
Publié dans: Artificial Intelligence Review, Numéro 57, 2024, ISSN 1573-7462
Éditeur: Springer Science and Business Media LLC
DOI: 10.1007/S10462-024-10852-W

Diagnosis extraction from unstructured Dutch echocardiogram reports using span- and document-level characteristic classification

Auteurs: Bauke Arends, Melle Vessies, Dirk van Osch, Arco Teske, Pim van der Harst, René van Es, Bram van Es
Publié dans: BMC Medical Informatics and Decision Making, Numéro 25, 2025, ISSN 1472-6947
Éditeur: Springer Science and Business Media LLC
DOI: 10.1186/S12911-025-02897-W

Artificial intelligence: revolutionizing cardiology with large language models

Auteurs: Machteld J Boonstra, Davy Weissenbacher, Jason H Moore, Graciela Gonzalez-Hernandez, Folkert W Asselbergs
Publié dans: European Heart Journal, Numéro 45, 2024, ISSN 0195-668X
Éditeur: Oxford University Press
DOI: 10.1093/eurheartj/ehad838

Characterization of Non-Ischemic Dilated Cardiomyopathy in a Native Tanzanian Cohort: MOYO Study

Auteurs: Lulu Said Fundikira, Pilly Chillo, Mohamed Z. Alimohamed, Henry Mayala, Engerasiya Kifai, Geofrey M. Aloyce, Appolinary Kamuhabwa, Gideon Kwesigabo, Linda W. van Laake, Folkert W. Asselbergs
Publié dans: Global Heart, Numéro 19, 2024, ISSN 2211-8160
Éditeur: Elsevier Science & Technology
DOI: 10.5334/gh.1298

Cardiovascular care with digital twin technology in the era of generative artificial intelligence

Auteurs: Phyllis M Thangaraj, Sean H Benson, Evangelos K Oikonomou, Folkert W Asselbergs, Rohan Khera
Publié dans: European Heart Journal, Numéro 45, 2024, ISSN 0195-668X
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/EURHEARTJ/EHAE619

Exploring the Potential of Neural Machine Translation for Cross-Language Clinical NLP Resource Generation through Annotation Projection

Auteurs: Jan Rodriguez Miret; Eulalia Farre Maduell; Salvador Lima Lopez; Laura Vigil Gimenez; Vicent Briva-Iglesias; Martin Krallinger
Publié dans: Machine Translation for Conquering Language Barriers, 2024, ISSN 1573-0573
Éditeur: Springer Science and Business Media B.V.
DOI: 10.20944/PREPRINTS202408.0616.V1

Preserving Privacy in Large Language Models: A Survey on Current Threats and Solutions

Auteurs: Michele Miranda, Elena Sofia Ruzzetti, Andrea Santilli, Fabio Massimo Zanzotto, Sébastien Bratières, Emanuele Rodolà
Publié dans: Transactions on Machine Learning Research, 2025, ISSN 2835-8856
Éditeur: Transactions on Machine Learning Research
DOI: 10.48550/arXiv.2408.05212

FUTURE-AI: international consensus guideline for trustworthy and deployable artificial intelligence in healthcare

Auteurs: Lekadir, Karim; Feragen, Aasa; Fofanah, Abdul Joseph; Frangi, Alejandro F; Buyx, Alena; Emelie, Anais; Lara, Andrea; Porras, Antonio R; Chan, An-Wen; Navarro, Arcadi; Glocker, Ben; Botwe, Benard O; Khanal, Bishesh; Beger, Brigit; Wu, Carol C; Cintas, Celia; Langlotz, Curtis P; Rueckert, Daniel; Mzurikwao, Deogratias; Fotiadis, Dimitrios I; Zhussupov, Doszhan; Ferrante, Enzo; Meijering, Erik; Weicken, Eva; González, Fabio A; Asselbergs, Folkert W; Prior, Fred; Krestin, Gabriel P; Collins, Gary; Tegenaw, Geletaw S; Kaissis, Georgios; Misuraca, Gianluca; Tsakou, Gianna; Dwivedi, Girish; Kondylakis, Haridimos; Jayakody, Harsha; Woodruf, Henry C; Mayer, Horst Joachim; Aerts, Hugo JWL; Walsh, Ian; Chouvarda, Ioanna; Buvat, Irène; Tributsch, Isabell; Rekik, Islem; Duncan, James; Kalpathy-Cramer, Jayashree; Zahir, Jihad; Park, Jinah; Mongan, John; Gichoya, Judy W; Schnabel, Julia A; Kushibar, Kaisar; Riklund, Katrine; Mori, Kensaku; Marias, Kostas; Amugongo, Lameck M; Fromont, Lauren A; Maier-Hein, Lena; Alberich, Leonor Cerdá; Rittner, Leticia; Phiri, Lighton; Marrakchi-Kacem, Linda; Donoso-Bach, Lluís; Martí-Bonmatí, Luis; Cardoso, M Jorge; Bobowicz, Maciej; Shabani, Mahsa; Tsiknakis, Manolis; Zuluaga, Maria A; Bielikova, Maria; Fritzsche, Marie-Christine; Camacho, Marina; Linguraru, Marius George; Wenzel, Markus; De Bruijne, Marleen; Tolsgaard, Martin G; Ghassemi, Marzyeh; Ashrafuzzaman, Md; Goisauf, Melanie; Yaqub, Mohammad; Abadía, Mónica Cano; Mahmoud, Mukhtar M E; Elattar, Mustafa; Rieke, Nicola; Papanikolaou, Nikolaos; Lazrak, Noussair; Díaz, Oliver; Salvado, Olivier; Pujol, Oriol; Sall, Ousmane; Guevara, Pamela; Gordebeke, Peter; Lambin, Philippe; Brown, Pieta; Abolmaesumi, Purang; Dou, Qi; Lu, Qinghua; Osuala, Richard; Nakasi, Rose; Zhou, S Kevin; Napel, Sandy; Colantonio, Sara; Albarqouni, Shadi; Joshi, Smriti; Carter, Stacy; Klein, Stefan; Petersen, Steffen E; Aussó, Susanna; Awate, Suyash; Raviv, Tammy Riklin; Cook, Tessa; Mutsvangwa, Tinashe E M; Rogers, Wendy A; Niessen, Wiro J; Puig-Bosch, Xènia; Zeng, Yi; Mohammed, Yunusa G; Aquino, Yves Saint James; Salahuddin, Zohaib; Starmans, Martijn P A
Publié dans: BMJ, 2025, ISSN 1756-1833
Éditeur: BMJ Publishing Group
DOI: 10.1136/BMJ-2024-081554

Explainable machine learning using echocardiography to improve risk prediction in patients with chronic coronary syndrome

Auteurs: Mitchel A Molenaar, Berto J Bouma, Folkert W Asselbergs, Niels J Verouden, Jasper L Selder, Steven A J Chamuleau, Mark J Schuuring
Publié dans: European Heart Journal, Numéro 5, 2024, ISSN 0195-668X
Éditeur: Oxford University Press
DOI: 10.1093/ehjdh/ztae001

BMC Medical Informatics and Decision Making

Auteurs: Arends, Bauke; Vessies, Melle; van Osch, Dirk; Teske, Arco; van der Harst, Pim; van Es, René; van Es, Bram
Publié dans: BMC Medical Informatics and Decision Making, 2025, ISSN 1472-6947
Éditeur: BioMed Central
DOI: 10.48550/ARXIV.2408.06930

Druggable proteins influencing cardiac structure and function: Implications for heart failure therapies and cancer cardiotoxicity

Auteurs: Schmidt, Amand F; Bourfiss, Mimount; Alasiri, Abdulrahman; Puyol-Anton, Esther; Chopade, Sandesh; van Vugt, Marion; van der Laan, Sander W; Gross, Christian; Clarkson, Chris; Henry, Albert; Lumbers, Tom R; van der Harst, Pim; Franceschini, Nora; etc.
Publié dans: Sience Advances, Numéro 17, 2023, ISSN 2375-2548
Éditeur: American Association for the Advancement of Science
DOI: 10.1126/sciadv.add4984

MEDDOPLACE Shared Task overview: recognition, normalization and classification of locations and patient movement in clinical texts

Auteurs: Lima-López, Salvador; Farré-Maduell, Eulàlia; Brivá-Iglesias, Vicent; Gascó, Luis; Krallinger, Martin
Publié dans: Procesamiento del Lenguaje Natural, Numéro 71, 2023, ISSN 1135-5948
Éditeur: Sociedad Espanola para el Procesamiento del Lenguaje Natural
DOI: 10.26342/2023-71-23

Explainable Artificial Intelligence and Cardiac Imaging: Toward More Interpretable Models

Auteurs: Salih, Ahmed; Boscolo Galazzo, Ilaria; Gkontra, Polyxeni; Lee, Aaron Mark; Lekadir, Karim; Raisi-Estabragh, Zahra; Petersen, Steffen E.
Publié dans: Circulation: Cardiovascular Imaging, Numéro 4, 2023, ISSN 1941-9651
Éditeur: Lippincott Williams and Wilkins Ltd.
DOI: 10.1161/circimaging.122.014519

An assessment of the European Patient Summary for clinical research: a case study in cardiology

Auteurs: Gokce Banu Laleci Erturkmen, Ali Anil Sinaci, Tuncay Namli, Machteld J. Boonstra, Karim Lekadir, Polyxeni Gkontra, Catherine Chronaki, Rhonda Facile, Rebecca Baker, Rebecca Kush
Publié dans: Frontiers in Medicine, Numéro 11, 2024, ISSN 2296-858X
Éditeur: Frontiers Media SA
DOI: 10.3389/FMED.2024.1481551

Prioritising genetic findings for drug target identification and validation

Auteurs: Nikita Hukerikara, Aroon D. Hingorani, Folkert W. Asselbergs, Chris Finan, Amand F. Schmidt
Publié dans: Atherosclerosis, Numéro 390, 2024, ISSN 0021-9150
Éditeur: Elsevier Ireland Ltd
DOI: 10.1016/j.atherosclerosis.2024.117462

Overview of MedProcNER Task on Medical Procedure Detection and Entity Linking at BioASQ 2023

Auteurs: Lima-López S, Farré-Maduell E, Gascó L, Nentidis A, Krithara A, Katsimpras G, Paliouras G, Krallinger M.
Publié dans: CEUR Workshop Proceedings, Numéro 1, 2023, ISSN 1613-0073
Éditeur: CEUR-WS

Overview of SympTEMIST at BioCreative VIII: corpus, guidelines and evaluation of systems for the detection and normalization of symptoms, signs and findings from text.

Auteurs: Lima-López, Salvador; Farré-Maduell, Eulàlia; Gasco-Sánchez, Luis; Rodríguez-Miret, Jan; Krallinger, Martin
Publié dans: 2023
Éditeur: Proceedings of the BioCreative VIII Challenge and Workshop: Curation and Evaluation in the era of Generative Models.
DOI: 10.5281/ZENODO.8223653

OmniSketch: Efficient Multi-Dimensional High-Velocity Stream Analytics with Arbitrary Predicates

Auteurs: Wieger R. Punter, Odysseas Papapetrou, Minos Garofalakis
Publié dans: Proceedings of the VLDB Endowment, Numéro 17, 2023
Éditeur: arXiv
DOI: 10.14778/3632093.3632098

Overview of BioASQ 2025: The Thirteenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering

Auteurs: Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Martin Krallinger, Miguel Rodríguez-Ortega, Eduard Rodriguez-López, Natalia Loukachevitch, Andrey Sakhovskiy, Elena Tutubalina, Dimitris Dimitriadis, Grigorios Tsoumakas, George Giannakoulas, Alexandra Bekiaridou, Athanasios Samaras, Giorgio Maria Di Nunzio, Nicola Ferro, Stefano Marchesin, Marco Martinelli, Gianmaria Silvello, Georgios Paliouras
Publié dans: Lecture Notes in Computer Science, Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2025
Éditeur: Springer Nature Switzerland
DOI: 10.1007/978-3-032-04354-2_12

Overview of MultiCardioNER Task at BioASQ 2024 on Medical Specialty and Language Adaptation of Clinical NER Systems for Spanish, English and Italian

Auteurs: Lima-López S, Farré-Maduell E, Rodríguez-Miret J, Rodríguez-Ortega M, Lilli L, Lenkowicz J, Ceroni G, Kossoff J, Shah A, Nentidis A, Krithara A, Katsimpras G, Paliouras G, Krallinger M.
Publié dans: Working Notes of the Conference and Labs of the Evaluation Forum. CLEF 2024. Lecture Notes in Computer Science, 2024
Éditeur: CEUR Workshop Proceedings

Overview of MedProcNER Task on Medical Procedure Detection and Entity Linking at BioASQ 2023

Auteurs: Salvador Lima-López, Eulàlia Farré-Maduell, Luis Gascó, Anastasios Nentidis, Anastasia Krithara, Georgios Katsimpras, Georgios Paliouras and Martin Krallinger
Publié dans: InCLEF (Working Notes), 2023
Éditeur: InCLEF (Working Notes)

Lecture Notes in Computer Science: BioASQ at CLEF2023: The Eleventh Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge

Auteurs: Nentidis, Anastasios; Krithara, Anastasia; Paliouras, Georgios; Farre Maduell, Eulalia; Lima Lopez, Salvador; Krallinger, Martin
Publié dans: Advances in Information Retrieval. ECIR 2023. Lecture Notes in Computer Science, Numéro 13982, 2023, ISSN 0302-9743
Éditeur: Springer Verlag
DOI: 10.1007/978-3-031-28241-6_66

Generation of Radiology Findings in Chest X-Ray by Leveraging Collaborative Knowledge

Auteurs: Manuela Daniela Danu, George Marica, Sanjeev Kumar Karn, Bogdan Georgescu, Awais Mansoor, Florin Ghesu, Lucian Mihai Itu, Constantin Suciu, Sasa Grbic, Oladimeji Farri, Dorin Comaniciu
Publié dans: Procedia Computer Science, 2023, ISSN 1877-0509
Éditeur: Elsevier BV
DOI: 10.1016/j.procs.2023.08.094

Multilingual Clinical NER for Diseases and Medications Recognition in Cardiology Texts using BERT Embeddings

Auteurs: Danu M. D., Marica G., Suciu C., Itu L. M., Farri O.
Publié dans: Working Notes of the Conference and Labs of the Evaluation Forum. CLEF 2024., 2024
Éditeur: CEUR Workshop Proceedings

Overview of MultiClinSum task at BioASQ 2025: evaluation of clinical case summarization strategies for multiple languages: data, evaluation, resources and results

Auteurs: Miguel Rodríguez-Ortega, Eduard Rodríguez-López, Salvador Lima-López, Carlos Escolano, Audrey Mash, Maite Melero, Lorenzo Pratesi, Laura Vigil-Gimenez, Leticia Fernandez, Eulàlia Farré-Maduell and Martin Krallinger
Publié dans: CLEF BioASQ workshop 2025, 2025
Éditeur: CLEF 2025 Working Notes

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