A European Health Data Toolbox for Enhancing Cardiology Data Interoperability, Reusability and Privacy

Risultati finali

Pubblicazioni

Cardiac magnetic resonance markers of pre-clinical hypertrophic and dilated cardiomyopathy in genetic variant carriers

Autori: Philip M. Croon, Marion van Vugt, Cornelis P. Allaart, Bram Ruijsink, Perry M. Elliott, Folkert W. Asselbergs, Rohan Khera, Connie R. Bezzina, Michiel Winter, A. Floriaan Schmidt
Pubblicato in: BMC Medicine, Numero 23, 2025, ISSN 1741-7015
Editore: Springer Science and Business Media LLC
DOI: 10.1186/S12916-025-04226-4

A scalable and transparent data pipeline for AI-enabled health data ecosystems

Autori: Tuncay Namli, Ali Anıl Sınacı, Suat Gönül, Cristina Ruiz Herguido, Patricia Garcia-Canadilla, Adriana Modrego Muñoz, Arnau Valls Esteve, Gökçe Banu Laleci Ertürkmen
Pubblicato in: Frontiers in Medicine, Numero 11, 2024, ISSN 2296-858X
Editore: Frontiers Media SA
DOI: 10.3389/FMED.2024.1393123

Five critical quality criteria for artificial intelligence-based prediction models

Autori: Florien S van Royen, Folkert W Asselbergs, Fernando Alfonso, Panos Vardas, and Maarten van Smeden
Pubblicato in: European Heart Journal, Numero 44, 2023, ISSN 0195-668X
Editore: Oxford University Press
DOI: 10.1093/eurheartj/ehad727

Digital twins: reimagining the future of cardiovascular risk prediction and personalised care

Autori: Katarzyna Dziopa, Karim Lekadir, Pim van der Harst, Folkert W. Asselbergs
Pubblicato in: Hellenic Journal of Cardiology, Numero 81, 2024, ISSN 1109-9666
Editore: Elsevier BV
DOI: 10.1016/J.HJC.2024.06.001

The CODE-EHR global framework: lifting the veil on health record data

Autori: Folkert W Asselbergs; Dipak Kotecha
Pubblicato in: European Heart Journal, Numero 44, 2023, ISSN 0195-668X
Editore: Oxford University Press
DOI: 10.1093/eurheartj/ehad424

A textual dataset of de-identified health records in Spanish and Catalan for medical entity recognition and anonymization

Autori: Salvador Lima-López, Eulàlia Farré-Maduell, Luis Gasco, Jan Rodríguez-Miret, Santiago Frid, Xavier Pastor, Xavier Borrat, Martin Krallinger
Pubblicato in: Scientific Data, Numero 12, 2025, ISSN 2052-4463
Editore: Springer Science and Business Media LLC
DOI: 10.1038/S41597-025-05320-1

BMC Medicine

Autori: Philip M Croon; Marion van Vugt; Cornelis P Allaart; Bram Ruijsink; Perry M Elliott; Folkert W Asselbergs; Rohan Khera; Connie R Bezzina; Michiel Winter; Amand Floriaan Schmidt
Pubblicato in: BMC Medicine, 2025, ISSN 1741-7015
Editore: BioMed Central
DOI: 10.1101/2024.11.15.24317368

A review of evaluation approaches for explainable AI with applications in cardiology

Autori: Ahmed M. Salih, Ilaria Boscolo Galazzo, Polyxeni Gkontra, Elisa Rauseo, Aaron Mark Lee, Karim Lekadir, Petia Radeva, Steffen E. Petersen, Gloria Menegaz
Pubblicato in: Artificial Intelligence Review, Numero 57, 2024, ISSN 1573-7462
Editore: Springer Science and Business Media LLC
DOI: 10.1007/S10462-024-10852-W

Diagnosis extraction from unstructured Dutch echocardiogram reports using span- and document-level characteristic classification

Autori: Bauke Arends, Melle Vessies, Dirk van Osch, Arco Teske, Pim van der Harst, René van Es, Bram van Es
Pubblicato in: BMC Medical Informatics and Decision Making, Numero 25, 2025, ISSN 1472-6947
Editore: Springer Science and Business Media LLC
DOI: 10.1186/S12911-025-02897-W

Artificial intelligence: revolutionizing cardiology with large language models

Autori: Machteld J Boonstra, Davy Weissenbacher, Jason H Moore, Graciela Gonzalez-Hernandez, Folkert W Asselbergs
Pubblicato in: European Heart Journal, Numero 45, 2024, ISSN 0195-668X
Editore: Oxford University Press
DOI: 10.1093/eurheartj/ehad838

Characterization of Non-Ischemic Dilated Cardiomyopathy in a Native Tanzanian Cohort: MOYO Study

Autori: Lulu Said Fundikira, Pilly Chillo, Mohamed Z. Alimohamed, Henry Mayala, Engerasiya Kifai, Geofrey M. Aloyce, Appolinary Kamuhabwa, Gideon Kwesigabo, Linda W. van Laake, Folkert W. Asselbergs
Pubblicato in: Global Heart, Numero 19, 2024, ISSN 2211-8160
Editore: Elsevier Science & Technology
DOI: 10.5334/gh.1298

Cardiovascular care with digital twin technology in the era of generative artificial intelligence

Autori: Phyllis M Thangaraj, Sean H Benson, Evangelos K Oikonomou, Folkert W Asselbergs, Rohan Khera
Pubblicato in: European Heart Journal, Numero 45, 2024, ISSN 0195-668X
Editore: Oxford University Press (OUP)
DOI: 10.1093/EURHEARTJ/EHAE619

Exploring the Potential of Neural Machine Translation for Cross-Language Clinical NLP Resource Generation through Annotation Projection

Autori: Jan Rodriguez Miret; Eulalia Farre Maduell; Salvador Lima Lopez; Laura Vigil Gimenez; Vicent Briva-Iglesias; Martin Krallinger
Pubblicato in: Machine Translation for Conquering Language Barriers, 2024, ISSN 1573-0573
Editore: Springer Science and Business Media B.V.
DOI: 10.20944/PREPRINTS202408.0616.V1

Preserving Privacy in Large Language Models: A Survey on Current Threats and Solutions

Autori: Michele Miranda, Elena Sofia Ruzzetti, Andrea Santilli, Fabio Massimo Zanzotto, Sébastien Bratières, Emanuele Rodolà
Pubblicato in: Transactions on Machine Learning Research, 2025, ISSN 2835-8856
Editore: Transactions on Machine Learning Research
DOI: 10.48550/arXiv.2408.05212

FUTURE-AI: international consensus guideline for trustworthy and deployable artificial intelligence in healthcare

Autori: Lekadir, Karim; Feragen, Aasa; Fofanah, Abdul Joseph; Frangi, Alejandro F; Buyx, Alena; Emelie, Anais; Lara, Andrea; Porras, Antonio R; Chan, An-Wen; Navarro, Arcadi; Glocker, Ben; Botwe, Benard O; Khanal, Bishesh; Beger, Brigit; Wu, Carol C; Cintas, Celia; Langlotz, Curtis P; Rueckert, Daniel; Mzurikwao, Deogratias; Fotiadis, Dimitrios I; Zhussupov, Doszhan; Ferrante, Enzo; Meijering, Erik; Weicken, Eva; González, Fabio A; Asselbergs, Folkert W; Prior, Fred; Krestin, Gabriel P; Collins, Gary; Tegenaw, Geletaw S; Kaissis, Georgios; Misuraca, Gianluca; Tsakou, Gianna; Dwivedi, Girish; Kondylakis, Haridimos; Jayakody, Harsha; Woodruf, Henry C; Mayer, Horst Joachim; Aerts, Hugo JWL; Walsh, Ian; Chouvarda, Ioanna; Buvat, Irène; Tributsch, Isabell; Rekik, Islem; Duncan, James; Kalpathy-Cramer, Jayashree; Zahir, Jihad; Park, Jinah; Mongan, John; Gichoya, Judy W; Schnabel, Julia A; Kushibar, Kaisar; Riklund, Katrine; Mori, Kensaku; Marias, Kostas; Amugongo, Lameck M; Fromont, Lauren A; Maier-Hein, Lena; Alberich, Leonor Cerdá; Rittner, Leticia; Phiri, Lighton; Marrakchi-Kacem, Linda; Donoso-Bach, Lluís; Martí-Bonmatí, Luis; Cardoso, M Jorge; Bobowicz, Maciej; Shabani, Mahsa; Tsiknakis, Manolis; Zuluaga, Maria A; Bielikova, Maria; Fritzsche, Marie-Christine; Camacho, Marina; Linguraru, Marius George; Wenzel, Markus; De Bruijne, Marleen; Tolsgaard, Martin G; Ghassemi, Marzyeh; Ashrafuzzaman, Md; Goisauf, Melanie; Yaqub, Mohammad; Abadía, Mónica Cano; Mahmoud, Mukhtar M E; Elattar, Mustafa; Rieke, Nicola; Papanikolaou, Nikolaos; Lazrak, Noussair; Díaz, Oliver; Salvado, Olivier; Pujol, Oriol; Sall, Ousmane; Guevara, Pamela; Gordebeke, Peter; Lambin, Philippe; Brown, Pieta; Abolmaesumi, Purang; Dou, Qi; Lu, Qinghua; Osuala, Richard; Nakasi, Rose; Zhou, S Kevin; Napel, Sandy; Colantonio, Sara; Albarqouni, Shadi; Joshi, Smriti; Carter, Stacy; Klein, Stefan; Petersen, Steffen E; Aussó, Susanna; Awate, Suyash; Raviv, Tammy Riklin; Cook, Tessa; Mutsvangwa, Tinashe E M; Rogers, Wendy A; Niessen, Wiro J; Puig-Bosch, Xènia; Zeng, Yi; Mohammed, Yunusa G; Aquino, Yves Saint James; Salahuddin, Zohaib; Starmans, Martijn P A
Pubblicato in: BMJ, 2025, ISSN 1756-1833
Editore: BMJ Publishing Group
DOI: 10.1136/BMJ-2024-081554

Explainable machine learning using echocardiography to improve risk prediction in patients with chronic coronary syndrome

Autori: Mitchel A Molenaar, Berto J Bouma, Folkert W Asselbergs, Niels J Verouden, Jasper L Selder, Steven A J Chamuleau, Mark J Schuuring
Pubblicato in: European Heart Journal, Numero 5, 2024, ISSN 0195-668X
Editore: Oxford University Press
DOI: 10.1093/ehjdh/ztae001

BMC Medical Informatics and Decision Making

Autori: Arends, Bauke; Vessies, Melle; van Osch, Dirk; Teske, Arco; van der Harst, Pim; van Es, René; van Es, Bram
Pubblicato in: BMC Medical Informatics and Decision Making, 2025, ISSN 1472-6947
Editore: BioMed Central
DOI: 10.48550/ARXIV.2408.06930

Druggable proteins influencing cardiac structure and function: Implications for heart failure therapies and cancer cardiotoxicity

Autori: Schmidt, Amand F; Bourfiss, Mimount; Alasiri, Abdulrahman; Puyol-Anton, Esther; Chopade, Sandesh; van Vugt, Marion; van der Laan, Sander W; Gross, Christian; Clarkson, Chris; Henry, Albert; Lumbers, Tom R; van der Harst, Pim; Franceschini, Nora; etc.
Pubblicato in: Sience Advances, Numero 17, 2023, ISSN 2375-2548
Editore: American Association for the Advancement of Science
DOI: 10.1126/sciadv.add4984

MEDDOPLACE Shared Task overview: recognition, normalization and classification of locations and patient movement in clinical texts

Autori: Lima-López, Salvador; Farré-Maduell, Eulàlia; Brivá-Iglesias, Vicent; Gascó, Luis; Krallinger, Martin
Pubblicato in: Procesamiento del Lenguaje Natural, Numero 71, 2023, ISSN 1135-5948
Editore: Sociedad Espanola para el Procesamiento del Lenguaje Natural
DOI: 10.26342/2023-71-23

Explainable Artificial Intelligence and Cardiac Imaging: Toward More Interpretable Models

Autori: Salih, Ahmed; Boscolo Galazzo, Ilaria; Gkontra, Polyxeni; Lee, Aaron Mark; Lekadir, Karim; Raisi-Estabragh, Zahra; Petersen, Steffen E.
Pubblicato in: Circulation: Cardiovascular Imaging, Numero 4, 2023, ISSN 1941-9651
Editore: Lippincott Williams and Wilkins Ltd.
DOI: 10.1161/circimaging.122.014519

An assessment of the European Patient Summary for clinical research: a case study in cardiology

Autori: Gokce Banu Laleci Erturkmen, Ali Anil Sinaci, Tuncay Namli, Machteld J. Boonstra, Karim Lekadir, Polyxeni Gkontra, Catherine Chronaki, Rhonda Facile, Rebecca Baker, Rebecca Kush
Pubblicato in: Frontiers in Medicine, Numero 11, 2024, ISSN 2296-858X
Editore: Frontiers Media SA
DOI: 10.3389/FMED.2024.1481551

Prioritising genetic findings for drug target identification and validation

Autori: Nikita Hukerikara, Aroon D. Hingorani, Folkert W. Asselbergs, Chris Finan, Amand F. Schmidt
Pubblicato in: Atherosclerosis, Numero 390, 2024, ISSN 0021-9150
Editore: Elsevier Ireland Ltd
DOI: 10.1016/j.atherosclerosis.2024.117462

Overview of MedProcNER Task on Medical Procedure Detection and Entity Linking at BioASQ 2023

Autori: Lima-López S, Farré-Maduell E, Gascó L, Nentidis A, Krithara A, Katsimpras G, Paliouras G, Krallinger M.
Pubblicato in: CEUR Workshop Proceedings, Numero 1, 2023, ISSN 1613-0073
Editore: CEUR-WS

Overview of SympTEMIST at BioCreative VIII: corpus, guidelines and evaluation of systems for the detection and normalization of symptoms, signs and findings from text.

Autori: Lima-López, Salvador; Farré-Maduell, Eulàlia; Gasco-Sánchez, Luis; Rodríguez-Miret, Jan; Krallinger, Martin
Pubblicato in: 2023
Editore: Proceedings of the BioCreative VIII Challenge and Workshop: Curation and Evaluation in the era of Generative Models.
DOI: 10.5281/ZENODO.8223653

OmniSketch: Efficient Multi-Dimensional High-Velocity Stream Analytics with Arbitrary Predicates

Autori: Wieger R. Punter, Odysseas Papapetrou, Minos Garofalakis
Pubblicato in: Proceedings of the VLDB Endowment, Numero 17, 2023
Editore: arXiv
DOI: 10.14778/3632093.3632098

Overview of BioASQ 2025: The Thirteenth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering

Autori: Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Martin Krallinger, Miguel Rodríguez-Ortega, Eduard Rodriguez-López, Natalia Loukachevitch, Andrey Sakhovskiy, Elena Tutubalina, Dimitris Dimitriadis, Grigorios Tsoumakas, George Giannakoulas, Alexandra Bekiaridou, Athanasios Samaras, Giorgio Maria Di Nunzio, Nicola Ferro, Stefano Marchesin, Marco Martinelli, Gianmaria Silvello, Georgios Paliouras
Pubblicato in: Lecture Notes in Computer Science, Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2025
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-032-04354-2_12

Overview of MultiCardioNER Task at BioASQ 2024 on Medical Specialty and Language Adaptation of Clinical NER Systems for Spanish, English and Italian

Autori: Lima-López S, Farré-Maduell E, Rodríguez-Miret J, Rodríguez-Ortega M, Lilli L, Lenkowicz J, Ceroni G, Kossoff J, Shah A, Nentidis A, Krithara A, Katsimpras G, Paliouras G, Krallinger M.
Pubblicato in: Working Notes of the Conference and Labs of the Evaluation Forum. CLEF 2024. Lecture Notes in Computer Science, 2024
Editore: CEUR Workshop Proceedings

Overview of MedProcNER Task on Medical Procedure Detection and Entity Linking at BioASQ 2023

Autori: Salvador Lima-López, Eulàlia Farré-Maduell, Luis Gascó, Anastasios Nentidis, Anastasia Krithara, Georgios Katsimpras, Georgios Paliouras and Martin Krallinger
Pubblicato in: InCLEF (Working Notes), 2023
Editore: InCLEF (Working Notes)

Lecture Notes in Computer Science: BioASQ at CLEF2023: The Eleventh Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge

Autori: Nentidis, Anastasios; Krithara, Anastasia; Paliouras, Georgios; Farre Maduell, Eulalia; Lima Lopez, Salvador; Krallinger, Martin
Pubblicato in: Advances in Information Retrieval. ECIR 2023. Lecture Notes in Computer Science, Numero 13982, 2023, ISSN 0302-9743
Editore: Springer Verlag
DOI: 10.1007/978-3-031-28241-6_66

Generation of Radiology Findings in Chest X-Ray by Leveraging Collaborative Knowledge

Autori: Manuela Daniela Danu, George Marica, Sanjeev Kumar Karn, Bogdan Georgescu, Awais Mansoor, Florin Ghesu, Lucian Mihai Itu, Constantin Suciu, Sasa Grbic, Oladimeji Farri, Dorin Comaniciu
Pubblicato in: Procedia Computer Science, 2023, ISSN 1877-0509
Editore: Elsevier BV
DOI: 10.1016/j.procs.2023.08.094

Multilingual Clinical NER for Diseases and Medications Recognition in Cardiology Texts using BERT Embeddings

Autori: Danu M. D., Marica G., Suciu C., Itu L. M., Farri O.
Pubblicato in: Working Notes of the Conference and Labs of the Evaluation Forum. CLEF 2024., 2024
Editore: CEUR Workshop Proceedings

Overview of MultiClinSum task at BioASQ 2025: evaluation of clinical case summarization strategies for multiple languages: data, evaluation, resources and results

Autori: Miguel Rodríguez-Ortega, Eduard Rodríguez-López, Salvador Lima-López, Carlos Escolano, Audrey Mash, Maite Melero, Lorenzo Pratesi, Laura Vigil-Gimenez, Leticia Fernandez, Eulàlia Farré-Maduell and Martin Krallinger
Pubblicato in: CLEF BioASQ workshop 2025, 2025
Editore: CLEF 2025 Working Notes

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Pubblicazioni

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