New system-driven bioremediation of polluted habitats and environment

Project Information

NYMPHE

Grant agreement ID: 101060625

DOI

10.3030/101060625

EC signature date 5 December 2022

Start date 1 January 2023

End date 31 December 2026

Funded under

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Total cost

€ 5 702 902,80

EU contribution

€ 5 499 973,50

Coordinated by

ALMA MATER STUDIORUM - UNIVERSITA DI BOLOGNA
Italy

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Websites, patent fillings, videos etc. (1)

Project website

Project website online – linked to Task 5.4

Documents, reports (4)

Chemical and toxicological characterization of all matrices from contaminated sites

Report on the initial chemical and toxicological characterization of all matrices from the Nymphe contaminated sites – linked to Task 4.2

Initial dissemination and communication plan

Preparation of a detailed plan outlining main target groups, communication channels, project outcomes to be disseminated and dissemination strategies – linked to Task 5.2

Report on the sites ready for field experiments

Report on the sites ready for field experiments, including site characterization for in situ remediation, infrastructures and permits – linked to Task 4.1

Report on stakeholder analysis and mapping

Report on stakeholder analysis and mapping – linked to Task 5.1

Data Management Plan (1)

Initial Data Management Plan

The DMP will provide the identification elements and the descriptions of the data sets and will include details regarding how the research data will be handled during the project and how they will be preserved after it is completed. It will specify which methodologies and standards will be used in the data creation and management and how and when the data will be shared and made open for re-use – linked to Task 5.6

Publications

Peer reviewed articles (16)

Computationally guided genome rewiring of Escherichia coli and its application for nanopolyethylene terephthalate (PET) biodegradation and upcycling

Author(s): Vidal, Paula; Giménez-Dejoz, Joan; Fernandez-Lopez, Laura; Romero, Sonia; Nazemi, Seyed Amirabbas; Luengo, Miguel; Gonzalez-Alfonso, Jose L.; Martinez-Sugrañes, Mireia; Robles-Martín, Ana; Almendral, David; Roda, Sergi; Pérez-García, Pablo; Kruse, Luzie; Jaeger, Karl-Erich; Streit, Wolfgang R.; Plou, Francisco J.; Floor, Martin; Shahgaldian, Patrick; Bargiela, Rafael; Guallar, Víctor; Ferrer, Manuel
Published in: Trends in Biotechnology, 2025, ISSN 1879-3096
Publisher: Cell Press
DOI: 10.5281/ZENODO.12568116

The Structural Permissiveness of Triosephosphate Isomerase (TpiA) of <i>Escherichia coli</i>

Author(s): Belén Calles, Borja Pitarch, Víctor de Lorenzo
Published in: ChemBioChem, Issue 26, 2025, ISSN 1439-4227
Publisher: Wiley
DOI: 10.1002/CBIC.202400863

Pavlovian‐Type Learning in Environmental Bacteria: Regulation of Herbicide Resistance by Arsenic in <scp> <i>Pseudomonas putida</i> </scp>

Author(s): David Paez‐Espino; Gonzalo Durante‐Rodríguez; Elena Alonso Fernandes; Manuel Carmona; Victor de Lorenzo
Published in: Environmental Microbiology, 2024, ISSN 1462-2920
Publisher: Wiley
DOI: 10.1111/1462-2920.70012

Polychlorinated biphenyls modify Arabidopsis root exudation pattern to accommodate degrading bacteria, showing strain and functional trait specificity

Author(s): Rolli E., Ghitti E, Mapelli F., Borin S.
Published in: Frontiers in plant science, 2024, ISSN 1664-462X
Publisher: Lausanne Frontiers Media
DOI: 10.3389/fpls.2024.1429096

Pressure-dependent growth controls 3D architecture of Pseudomonas putida microcolonies

Author(s): Juhyun Kim, Víctor de Lorenzo, Ángel Goñi-Moreno
Published in: Environmental Microbiology Reports, 2023, ISSN 1758-2229
Publisher: Wiley
DOI: 10.1111/1758-2229.13182

ChemCatChem

Author(s): Paula Vidal, Ana Robles‐Martín, Laura Fernandez‐Lopez, Jose L. Gonzalez‐Alfonso, David Almendral, Ruben Muñoz‐Tafalla, Francisco J. Plou, Víctor Guallar, Manuel Ferrer
Published in: ChemCatChem, Issue 16, 2025, ISSN 1867-3880
Publisher: Wiley - VCH Verlag GmbH & CO. KGaA
DOI: 10.1002/CCTC.202400765

Embedding a feruloyl esterase active site into a thermophilic endoxylanase scaffold for the degradation of feruloylated xylans

Author(s): Rubén Muñoz-Tafalla; Isabel Cea-Rama; Fadia V. Cervantes; Jose L. Gonzalez-Alfonso; Francisco J. Plou; Julio Polaina; Julia Sanz-Aparicio; Manuel Ferrer; Víctor Guallar; David Talens-Perales
Published in: Computational and Structural Biotechnology Journal, 2025, ISSN 2001-0370
Publisher: Elsevier
DOI: 10.1016/J.CSBJ.2025.09.003

Penitentiaries: Bringing microbiological literacy to the fringes of society

Author(s): Víctor de Lorenzo
Published in: Microbial Biotechnology, 2024, ISSN 1751-7915
Publisher: Wiley
DOI: 10.1111/1751-7915.70052

Analyzing microbial communities and their biodegradation of multiple pharmaceuticals in membrane bioreactors

Author(s): Marcel Suleiman, Francesca Demaria, Cristina Zimmardi, Boris Alexander Kolvenbach & Philippe François-Xavier Corvini
Published in: Applied Microbiology and Biotechnology, 2023, ISSN 2191-0855
Publisher: Springer Nature
DOI: 10.1007/s00253-023-12677-z

In Vivo Sampling of Intracellular Heterogeneity of Pseudomonas putida Enables Multiobjective Optimization of Genetic Devices

Author(s): Hueso-Gil A, Calles B, de Lorenzo V.
Published in: ACS Synthetic Biology, 2023, ISSN 2161-5063
Publisher: American Chemical Society
DOI: 10.1021/acssynbio.3c00009

Pollutant profile complexity governs wastewater removal of recalcitrant pharmaceuticals

Author(s): Marcel Suleiman1, Natalie Le Lay1, Francesca Demaria1, Boris A. Kolvenbach1, Mariana S. Cretoiu2, Owen L. Petchey3, Alexandre Jousset2,4,*, Philippe F.-X. Corvin
Published in: ISME Journal, 2024, ISSN 1751-7370
Publisher: Oxford University Press
DOI: 10.1093/ismejo/wrae033

Journal of Hazardous Materials

Author(s): Hairong Ma, Anna N. Khusnutdinova, Sofia Lemak, Tatyana N. Chernikova, Olga V. Golyshina, David Almendral, Manuel Ferrer, Peter N. Golyshin, Alexander F. Yakunin
Published in: Journal of Hazardous Materials, Issue 481, 2025, ISSN 0304-3894
Publisher: Elsevier
DOI: 10.1016/J.JHAZMAT.2024.136540

AND Logic Based on Suppressor tRNAs Enables Stringent Control of Sliding Base Editors in <i>Pseudomonas putida</i>

Author(s): Elena Velázquez, Víctor de Lorenzo
Published in: ACS Synthetic Biology, Issue 13, 2024, ISSN 2161-5063
Publisher: American Chemical Society (ACS)
DOI: 10.1021/ACSSYNBIO.4C00640

Carlos Asensio and the dawn of molecular microbial ecology

Author(s): Víctor de Lorenzo; Fernando Baquero; Alfredo Aguilar
Published in: International Microbiology, 2024, ISSN 1618-1905
Publisher: Springer
DOI: 10.1007/S10123-024-00596-6

ACS Synthetic Biology

Author(s): Elena Velázquez; Víctor de Lorenzo
Published in: ACS Synthetic Biology, 2024, ISSN 2161-5063
Publisher: ACS Publications
DOI: 10.1021/ACSSYNBIO.4C00640

Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores

Author(s): Ana Robles-Martín, Ana, Rafael Amigot-Sánchez, Laura Fernandez-Lopez, Jose L. Gonzalez-Alfonso, Sergi Roda, Víctor Alcolea-Rodriguez, Diego Heras-Márquez, David Almendral, Cristina Coscolín, Francisco J. Plou, Raquel Portela, Miguel A. Bañares, Álvaro Mar
Published in: Nature Catalysis, 2023, ISSN 2520-1158
Publisher: Springer Nature
DOI: 10.1038/S41929-023-01048-6

Other (2)

The principle of uncertainty in biology: Will machine learning/artificial intelligence lead to the end of mechanistic studies?

Author(s): de Lorenzo V.
Published in: PLoS biology, 2024, ISSN 1545-7885
Publisher: Public Library of Science

Pseudomonas putida as a synthetic biology chassis and a metabolic engineering platform

Author(s): Esteban Martínez-García, Víctor de Lorenzo
Published in: Current Opinion in Biotechnology, 2024, ISSN 0958-1669
Publisher: Elsevier