New system-driven bioremediation of polluted habitats and environment

Información del proyecto

NYMPHE

Identificador del acuerdo de subvención: 101060625

DOI

10.3030/101060625

Fecha de la firma de la CE 5 Diciembre 2022

Fecha de inicio 1 Enero 2023

Fecha de finalización 31 Diciembre 2026

Financiado con arreglo a

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Coste total

€ 5 702 902,80

Aportación de la UE

€ 5 499 973,50

Coordinado por

ALMA MATER STUDIORUM - UNIVERSITA DI BOLOGNA
Italy

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Websites, patent fillings, videos etc. (1)

Project website

Project website online – linked to Task 5.4

Documents, reports (4)

Chemical and toxicological characterization of all matrices from contaminated sites

Report on the initial chemical and toxicological characterization of all matrices from the Nymphe contaminated sites – linked to Task 4.2

Initial dissemination and communication plan

Preparation of a detailed plan outlining main target groups, communication channels, project outcomes to be disseminated and dissemination strategies – linked to Task 5.2

Report on the sites ready for field experiments

Report on the sites ready for field experiments, including site characterization for in situ remediation, infrastructures and permits – linked to Task 4.1

Report on stakeholder analysis and mapping

Report on stakeholder analysis and mapping – linked to Task 5.1

Data Management Plan (1)

Initial Data Management Plan

The DMP will provide the identification elements and the descriptions of the data sets and will include details regarding how the research data will be handled during the project and how they will be preserved after it is completed. It will specify which methodologies and standards will be used in the data creation and management and how and when the data will be shared and made open for re-use – linked to Task 5.6

Publicaciones

Conference proceedings (17)

Synergistic Microplastic Degradation In Wastewater: How Can Electrochemical Oxidation Enhance Biodegradation?

Autores: Ceballos-Escalera A., Pous N., Bañeras L., Balaguer MD., Puig S.
Publicado en: 9th World Conference of the International Society for Microbial Electrochemistry and Technology (ISMET), 2025, ISBN 978-3-944280-78-3
Editor: Helmholtz-Zentrum für Umweltforschung
DOI: 10.5281/ZENODO.18299899

Plant Growth-Promoting Bacteria for Improved Phytoremediation of Contaminated Sites

Autores: Jakubová L., Červená J., Šmrhová T., Mašek F., Šuman J., Uhlík O.
Publicado en: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editor: Technical University of Crete
DOI: 10.5281/ZENODO.18269576

Microbial community assemblies for the biodegradation of mixed hydrocarbon pollutants in industrial contaminated soil.

Autores: Musmeci E, Giovanetti L, Palladino G, Candela M, Fava F, Biagi E, Zanaroli G
Publicado en: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editor: Technical University of Crete
DOI: 10.5281/ZENODO.18259733

NYMPHE Project: Eni Rewind’s bioremediation field tests

Autores: Barompriori M, Decima MA, Santoro F, Villani F
Publicado en: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editor: Technical University of Crete
DOI: 10.5281/ZENODO.18377596

Guild composition of rhizosphere bacteria exploitable for hydrocarbon bioremediation is driven by ecological interactions

Autores: Francesca Mapelli, Eleonora Rolli, Gabriele Capriglia, Luigi Bazzana, Elisa Ghitti, Lorenzo Vergani, Eliana Musmeci, Elena Biagi, Giulio Zanaroli, Sara Borin
Publicado en: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editor: Technical University of Crete

Adsorptive removal of Contaminants of Emerging Concern from Urban Wastewater using Bivalve Shells

Autores: Jesus F, Pascoal E, Calisto V, Blasco-Gómez R, Esteve-Núñez A, Jiménez-Conde M, Blázquez-Hernández S, Heras IL, Vosáhlova S, Kodešová T, Kyclt R, Pereira JL
Publicado en: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editor: Technical University of Crete
DOI: 10.5281/ZENODO.18268533

Innovative Approaches to Engineer Enzymes for Plastic Recycling Solutions

Autores: Vidal P, Gimenez J, Romero S… Ferrer M
Publicado en: 17th International Symposium on Biocatalysis and Biotransformations (Biotrans 2025), 2025
Editor: LD Organisation srl
DOI: 10.5281/ZENODO.18329768

De la Naturaleza a la Inteligencia Artificial: Diseñando la Biocatálisis del futuro

Autores: Ferrer, M., Vidal Ramon, P., Fernandez-Lopez, L., Robles Martín, A., Muñoz Tafalla, R., Gimenez Dejoz, J., Bargiela, R., & Guallar, V.
Publicado en: Congress of the Spanish Society of Biotechnology (Biotec2025), 2025
Editor: Universitata Autonoma de Barcelona
DOI: 10.5281/ZENODO.18373122

Unravelling the petroleum hydrocarbon-triggered shift in root exudation of sunflower (Helianthus annuus)

Autores: Elisa Ghitti, Eleonora Rolli, Francesca Mapelli, Gabriele Capriglia, Luigi Bazzana, Leilei Zhang, Luigi Lucini, Sara Borin
Publicado en: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editor: Technical University of Crete

Mining of toluene and xylene degraders from contaminated soil

Autores: Smrhova T. ,Masek F., Suman J., Strejcek M., Rippelova V., McGachy L., Uhlik O.
Publicado en: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editor: Technical University of Crete
DOI: 10.5281/ZENODO.18299124

Microbial electrochemistry in bioremediation

Autores: Puig, S., Bañeras, Ll., Pous, N., Balaguer, M.D. and Ceballos-Escalera, A
Publicado en: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editor: Technical University of Crete
DOI: 10.5281/ZENODO.18299712

Pesticide and plastic degradation by soil microorganisms

Autores: S. Monogyiou, K. Karkanorachaki, E. Syranidou, P. Seridou, and N. Kalogerakis
Publicado en: 18th International Symposium on Persistent Toxic Substances & Health, 2024, ISBN 978-618-5558-08-6
Editor: Technical University of Crete
DOI: 10.5281/ZENODO.18385158

Removal of antibiotic contaminants by microalgae

Autores: P. Seridou, S. Monogyiou, E. Syranidou and N. Kalogerakis
Publicado en: 18th International Symposium on Persistent Toxic Substances & Health, 2024, ISBN 978-618-5558-08-6
Editor: Technical University of Crete
DOI: 10.5281/ZENODO.18385090

Biocatalytic Strategies for the Degradation of Emerging Micropollutants: From Nanoplastics to Pharmaceuticals

Autores: Cervantes Dominguez, F. V., Almendral Nieto, D., Chernikova, T., Bargiela, R., Golyshin, P., & Ferrer, M.
Publicado en: Congress of the Spanish Society of Biotechnology (Biotec2025), 2025
Editor: Universitata autonoma de Barcelona
DOI: 10.5281/ZENODO.18373505

Novel biocatalyst for sustainable plastic removal

Autores: Vidal P
Publicado en: Congress of the Spanish Society of Catalysis (SECAT2025), 2025
Editor: University of Alcalà
DOI: 10.5281/ZENODO.18325332

Non-flavonoid root exudates shaped the plant ‘cry-for-help’ under polychlorinated biphenyl stress

Autores: Eleonora Rolli, Elisa Ghitti, Lorenzo Vergani, Francesca Mapelli, Sara Borin
Publicado en: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editor: Technical University of Crete

Potential of Bivalves for Bioremediation of Wastewater – Comparative Assessment of Biofiltration and Biosorption

Autores: Jesus F, Pascoal E, Sousa E, Abreu G, Mantas D, Monteiro L, Sousa M, Calisto V, Pereira JL
Publicado en: SETAC Europe 35th Annual Meeting, 2025, ISSN 2310-3043
Editor: SOCIETY OF ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY
DOI: 10.5281/ZENODO.18269141

Peer reviewed articles (21)

Engineering Escherichia coli for polyethylene terephthalate powder biodegradation via computational rewiring of an outer membrane protein

Autores: Joan Giménez-Dejoz, Paula Vidal, Sonia Romero, David Almendral, Miguel Luengo, Mireia Martinez-Sugrañes, Jose L. Gonzalez-Alfonso, Ana Robles-Martín, Francisco J. Plou, Rafael Bargiela, Martin Floor, Manuel Ferrer, Víctor Guallar, Laura Fernandez-Lopez
Publicado en: iScience, 2026, ISSN 2589-0042
Editor: Elsevier
DOI: 10.5281/ZENODO.17578239

Computationally guided genome rewiring of Escherichia coli and its application for nanopolyethylene terephthalate (PET) biodegradation and upcycling

Autores: Vidal, Paula; Giménez-Dejoz, Joan; Fernandez-Lopez, Laura; Romero, Sonia; Nazemi, Seyed Amirabbas; Luengo, Miguel; Gonzalez-Alfonso, Jose L.; Martinez-Sugrañes, Mireia; Robles-Martín, Ana; Almendral, David; Roda, Sergi; Pérez-García, Pablo; Kruse, Luzie; Jaeger, Karl-Erich; Streit, Wolfgang R.; Plou, Francisco J.; Floor, Martin; Shahgaldian, Patrick; Bargiela, Rafael; Guallar, Víctor; Ferrer, Manuel
Publicado en: Trends in Biotechnology, 2025, ISSN 1879-3096
Editor: Cell Press
DOI: 10.5281/ZENODO.12568116

The Structural Permissiveness of Triosephosphate Isomerase (TpiA) of <i>Escherichia coli</i>

Autores: Belén Calles, Borja Pitarch, Víctor de Lorenzo
Publicado en: ChemBioChem, Edición 26, 2025, ISSN 1439-4227
Editor: Wiley
DOI: 10.1002/CBIC.202400863

Pavlovian‐Type Learning in Environmental Bacteria: Regulation of Herbicide Resistance by Arsenic in <scp> <i>Pseudomonas putida</i> </scp>

Autores: David Paez‐Espino; Gonzalo Durante‐Rodríguez; Elena Alonso Fernandes; Manuel Carmona; Victor de Lorenzo
Publicado en: Environmental Microbiology, 2024, ISSN 1462-2920
Editor: Wiley
DOI: 10.1111/1462-2920.70012

Polychlorinated biphenyls modify Arabidopsis root exudation pattern to accommodate degrading bacteria, showing strain and functional trait specificity

Autores: Rolli E., Ghitti E, Mapelli F., Borin S.
Publicado en: Frontiers in plant science, 2024, ISSN 1664-462X
Editor: Lausanne Frontiers Media
DOI: 10.3389/fpls.2024.1429096

Differential effect of monoterpenes and flavonoids on the transcription of aromatic ring-hydroxylating dioxygenase genes in Rhodococcus opacus C1 and Rhodococcus sp. WAY2

Autores: Zubrova, Andrea; Tadrosová, Manuela; Semerád, Jaroslav; Cajthaml, Tomas; Pajer, Petr; Strejcek, Michal; Suman, Jachym; Uhlik, Ondrej
Publicado en: Microbial Genomics, 2025, ISSN 2057-5858
Editor: Microbiology Society
DOI: 10.5281/ZENODO.15090620

Pressure-dependent growth controls 3D architecture of Pseudomonas putida microcolonies

Autores: Juhyun Kim, Víctor de Lorenzo, Ángel Goñi-Moreno
Publicado en: Environmental Microbiology Reports, 2023, ISSN 1758-2229
Editor: Wiley
DOI: 10.1111/1758-2229.13182

ChemCatChem

Autores: Paula Vidal, Ana Robles‐Martín, Laura Fernandez‐Lopez, Jose L. Gonzalez‐Alfonso, David Almendral, Ruben Muñoz‐Tafalla, Francisco J. Plou, Víctor Guallar, Manuel Ferrer
Publicado en: ChemCatChem, Edición 16, 2025, ISSN 1867-3880
Editor: Wiley - VCH Verlag GmbH & CO. KGaA
DOI: 10.1002/CCTC.202400765

Thermophilic compost bacteria as a promising approach for removal of diclofenac and related pharmaceuticals from wastewater

Autores: Francesca Demaria, Ramona Blattner, Chasper Puorger, Boris Kolvenbach, Mariana S Cretoiu, Timm Hettich, Philippe Corvini, Georg Lipps, Marcel Suleiman
Publicado en: Water Research, ISSN 1879-2448
Editor: Elsevier
DOI: 10.1016/J.WATRES.2025.124629

Embedding a feruloyl esterase active site into a thermophilic endoxylanase scaffold for the degradation of feruloylated xylans

Autores: Rubén Muñoz-Tafalla; Isabel Cea-Rama; Fadia V. Cervantes; Jose L. Gonzalez-Alfonso; Francisco J. Plou; Julio Polaina; Julia Sanz-Aparicio; Manuel Ferrer; Víctor Guallar; David Talens-Perales
Publicado en: Computational and Structural Biotechnology Journal, 2025, ISSN 2001-0370
Editor: Elsevier
DOI: 10.1016/J.CSBJ.2025.09.003

Penitentiaries: Bringing microbiological literacy to the fringes of society

Autores: Víctor de Lorenzo
Publicado en: Microbial Biotechnology, 2024, ISSN 1751-7915
Editor: Wiley
DOI: 10.1111/1751-7915.70052

Analyzing microbial communities and their biodegradation of multiple pharmaceuticals in membrane bioreactors

Autores: Marcel Suleiman, Francesca Demaria, Cristina Zimmardi, Boris Alexander Kolvenbach & Philippe François-Xavier Corvini
Publicado en: Applied Microbiology and Biotechnology, 2023, ISSN 2191-0855
Editor: Springer Nature
DOI: 10.1007/s00253-023-12677-z

In Vivo Sampling of Intracellular Heterogeneity of Pseudomonas putida Enables Multiobjective Optimization of Genetic Devices

Autores: Hueso-Gil A, Calles B, de Lorenzo V.
Publicado en: ACS Synthetic Biology, 2023, ISSN 2161-5063
Editor: American Chemical Society
DOI: 10.1021/acssynbio.3c00009

Pollutant profile complexity governs wastewater removal of recalcitrant pharmaceuticals

Autores: Suleiman M, Le Lay N, Demaria F, Kolvenbach BA, Cretoiu MS, Petchey OL, Jousset A, Corvini PF
Publicado en: ISME Journal, 2024, ISSN 1751-7370
Editor: Oxford University Press
DOI: 10.1093/ISMEJO/WRAE033

Journal of Hazardous Materials

Autores: Hairong Ma, Anna N. Khusnutdinova, Sofia Lemak, Tatyana N. Chernikova, Olga V. Golyshina, David Almendral, Manuel Ferrer, Peter N. Golyshin, Alexander F. Yakunin
Publicado en: Journal of Hazardous Materials, Edición 481, 2025, ISSN 0304-3894
Editor: Elsevier
DOI: 10.1016/J.JHAZMAT.2024.136540

Removal of contaminants from wastewater using the bivalve Corbicula fluminea - Comparative assessment of biofiltration and biosorption

Autores: Jesus F, Pascoal E, Sousa EML, Mantas D, Sousa M, Vaz BMC, Gonçalves FJM, Coutinho JAP, Ventura SPM, Calisto V, Pereira JL
Publicado en: Journal of Environmental Management, 2025, ISSN 1095-8630
Editor: Elsevier
DOI: 10.1016/J.JENVMAN.2025.128039

AND Logic Based on Suppressor tRNAs Enables Stringent Control of Sliding Base Editors in <i>Pseudomonas putida</i>

Autores: Elena Velázquez, Víctor de Lorenzo
Publicado en: ACS Synthetic Biology, Edición 13, 2024, ISSN 2161-5063
Editor: American Chemical Society (ACS)
DOI: 10.1021/ACSSYNBIO.4C00640

Carlos Asensio and the dawn of molecular microbial ecology

Autores: Víctor de Lorenzo; Fernando Baquero; Alfredo Aguilar
Publicado en: International Microbiology, 2024, ISSN 1618-1905
Editor: Springer
DOI: 10.1007/S10123-024-00596-6

Pseudomonas putida as a synthetic biology chassis and a metabolic engineering platform

Autores: Martínez-García E, de Lorenzo V
Publicado en: Current Opinion in Biotechnology, 2024, ISSN 0958-1669
Editor: Elsevier
DOI: 10.1016/J.COPBIO.2023.103025

Phenol-driven cometabolic degradation of cis-1,2-dichloroethene (cDCE): insights from Acinetobacter pittii and Ectopseudomonas alcaliphila

Autores: Miguel Desmarais; Serena Fraraccio; Jakub Ridl; Jachym Suman; Andre Perez-Potti; Kenneth A. Dawson; Iva Dolinova; Lenka McGachy; Miluse Hradilova; Alena Sevcu; Michal Strejcek; Ondrej Uhlik
Publicado en: Environmental Sciences Europe, 2025, ISSN 2190-4715
Editor: Springer
DOI: 10.1186/S12302-025-01237-Z

Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores

Autores: Ana Robles-Martín, Ana, Rafael Amigot-Sánchez, Laura Fernandez-Lopez, Jose L. Gonzalez-Alfonso, Sergi Roda, Víctor Alcolea-Rodriguez, Diego Heras-Márquez, David Almendral, Cristina Coscolín, Francisco J. Plou, Raquel Portela, Miguel A. Bañares, Álvaro Mar
Publicado en: Nature Catalysis, 2023, ISSN 2520-1158
Editor: Springer Nature
DOI: 10.1038/S41929-023-01048-6

Thesis and dissertations (7)

Assemblaggio di comunità microbiche e monitoraggio della biodegradazione di idrocarburi alifatici e aromatici in matrici ambientali contaminate-EN:Assembly of microbial communities and monitoring of the biodegradation of aliphatic and aromatic hydrocarbon

Autores: Benzi Giuly
Publicado en: 2025
Editor: University of Bologna
DOI: 10.5281/ZENODO.18377568

Impact of Earthworms on pesticide degrading microorganisms - Der Einfluss von Regenwürmern auf pestizidabbauende Mikroorganismen

Autores: Julika Reddig
Publicado en: 2024
Editor: LUH-Institute of Microbiology
DOI: 10.5281/ZENODO.18385808

Development of an In Situ Approach for Monitoring the Biodegradation of Emerging Contaminants in Oxic/Anoxic Conditions

Autores: Paridhi Soni
Publicado en: 2024
Editor: Leibniz University Hannover - Institut of Microbiology
DOI: 10.5281/ZENODO.18385878

Charakterizace bakteriálních izolátů ze zeminy kontaminované petrochemickým průmyslem degradujících toluen a xylen (English: Characterization of toluene- and xylene-degrading bacterial isolates from soil contaminated by the petroleum industry)

Autores: František Mašek
Publicado en: 2025
Editor: University of Chemistry and Technology, Prague, Department of Biochemistry and Microbiology

Enhancing phthalate and phenol degradation in environmental bacteria via pSEVA428-ACBE3 induced random mutagenesis.

Autores: Josep Maria Trullols Martínez
Publicado en: 2025
Editor: Universiotat deGirona, Department of Biology

ENRICHMENT, ISOLATION AND CHARACTERIZATION OF PHARMACEUTICAL-DEGRADING BACTERIA FOR BIOFILM-MEDIATED BIOREMEDIATION IN THE ERPE RIVER HYPORHEIC ZONE

Autores: Sara Di Goia
Publicado en: 2025
Editor: University of Milan
DOI: 10.5281/ZENODO.18385648

Avaliação do potencial de bivalves para o tratamento de águas residuais [EN transl: Assessment of the potential of bivalves for wastewater treatment]

Autores: Pascoal, Érica Tavares
Publicado en: 2024
Editor: University of Aveiro, Department of Biology

Other (1)

The principle of uncertainty in biology: Will machine learning/artificial intelligence lead to the end of mechanistic studies?

Autores: de Lorenzo V.
Publicado en: PLoS biology, 2024, ISSN 1545-7885
Editor: Public Library of Science

Book chapters (1)

Metagenomic protocols and strategies.

Autores: Bargiela R, Méndez-García C, Martínez-Martínez M, Ferrer M
Publicado en: 2018
Editor: Elsevier
DOI: 10.1016/B978-0-323-91631-8.00018-4