New system-driven bioremediation of polluted habitats and environment

Información del proyecto

NYMPHE

Identificador del acuerdo de subvención: 101060625

DOI

10.3030/101060625

Fecha de la firma de la CE 5 Diciembre 2022

Fecha de inicio 1 Enero 2023

Fecha de finalización 31 Diciembre 2026

Financiado con arreglo a

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Coste total

€ 5 702 902,80

Aportación de la UE

€ 5 499 973,50

Coordinado por

ALMA MATER STUDIORUM - UNIVERSITA DI BOLOGNA
Italy

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Websites, patent fillings, videos etc. (1)

Project website

Project website online – linked to Task 5.4

Documents, reports (4)

Chemical and toxicological characterization of all matrices from contaminated sites

Report on the initial chemical and toxicological characterization of all matrices from the Nymphe contaminated sites – linked to Task 4.2

Initial dissemination and communication plan

Preparation of a detailed plan outlining main target groups, communication channels, project outcomes to be disseminated and dissemination strategies – linked to Task 5.2

Report on the sites ready for field experiments

Report on the sites ready for field experiments, including site characterization for in situ remediation, infrastructures and permits – linked to Task 4.1

Report on stakeholder analysis and mapping

Report on stakeholder analysis and mapping – linked to Task 5.1

Data Management Plan (1)

Initial Data Management Plan

The DMP will provide the identification elements and the descriptions of the data sets and will include details regarding how the research data will be handled during the project and how they will be preserved after it is completed. It will specify which methodologies and standards will be used in the data creation and management and how and when the data will be shared and made open for re-use – linked to Task 5.6

Publicaciones

Peer reviewed articles (16)

Computationally guided genome rewiring of Escherichia coli and its application for nanopolyethylene terephthalate (PET) biodegradation and upcycling

Autores: Vidal, Paula; Giménez-Dejoz, Joan; Fernandez-Lopez, Laura; Romero, Sonia; Nazemi, Seyed Amirabbas; Luengo, Miguel; Gonzalez-Alfonso, Jose L.; Martinez-Sugrañes, Mireia; Robles-Martín, Ana; Almendral, David; Roda, Sergi; Pérez-García, Pablo; Kruse, Luzie; Jaeger, Karl-Erich; Streit, Wolfgang R.; Plou, Francisco J.; Floor, Martin; Shahgaldian, Patrick; Bargiela, Rafael; Guallar, Víctor; Ferrer, Manuel
Publicado en: Trends in Biotechnology, 2025, ISSN 1879-3096
Editor: Cell Press
DOI: 10.5281/ZENODO.12568116

The Structural Permissiveness of Triosephosphate Isomerase (TpiA) of <i>Escherichia coli</i>

Autores: Belén Calles, Borja Pitarch, Víctor de Lorenzo
Publicado en: ChemBioChem, Edición 26, 2025, ISSN 1439-4227
Editor: Wiley
DOI: 10.1002/CBIC.202400863

Pavlovian‐Type Learning in Environmental Bacteria: Regulation of Herbicide Resistance by Arsenic in <scp> <i>Pseudomonas putida</i> </scp>

Autores: David Paez‐Espino; Gonzalo Durante‐Rodríguez; Elena Alonso Fernandes; Manuel Carmona; Victor de Lorenzo
Publicado en: Environmental Microbiology, 2024, ISSN 1462-2920
Editor: Wiley
DOI: 10.1111/1462-2920.70012

Polychlorinated biphenyls modify Arabidopsis root exudation pattern to accommodate degrading bacteria, showing strain and functional trait specificity

Autores: Rolli E., Ghitti E, Mapelli F., Borin S.
Publicado en: Frontiers in plant science, 2024, ISSN 1664-462X
Editor: Lausanne Frontiers Media
DOI: 10.3389/fpls.2024.1429096

Pressure-dependent growth controls 3D architecture of Pseudomonas putida microcolonies

Autores: Juhyun Kim, Víctor de Lorenzo, Ángel Goñi-Moreno
Publicado en: Environmental Microbiology Reports, 2023, ISSN 1758-2229
Editor: Wiley
DOI: 10.1111/1758-2229.13182

ChemCatChem

Autores: Paula Vidal, Ana Robles‐Martín, Laura Fernandez‐Lopez, Jose L. Gonzalez‐Alfonso, David Almendral, Ruben Muñoz‐Tafalla, Francisco J. Plou, Víctor Guallar, Manuel Ferrer
Publicado en: ChemCatChem, Edición 16, 2025, ISSN 1867-3880
Editor: Wiley - VCH Verlag GmbH & CO. KGaA
DOI: 10.1002/CCTC.202400765

Embedding a feruloyl esterase active site into a thermophilic endoxylanase scaffold for the degradation of feruloylated xylans

Autores: Rubén Muñoz-Tafalla; Isabel Cea-Rama; Fadia V. Cervantes; Jose L. Gonzalez-Alfonso; Francisco J. Plou; Julio Polaina; Julia Sanz-Aparicio; Manuel Ferrer; Víctor Guallar; David Talens-Perales
Publicado en: Computational and Structural Biotechnology Journal, 2025, ISSN 2001-0370
Editor: Elsevier
DOI: 10.1016/J.CSBJ.2025.09.003

Penitentiaries: Bringing microbiological literacy to the fringes of society

Autores: Víctor de Lorenzo
Publicado en: Microbial Biotechnology, 2024, ISSN 1751-7915
Editor: Wiley
DOI: 10.1111/1751-7915.70052

Analyzing microbial communities and their biodegradation of multiple pharmaceuticals in membrane bioreactors

Autores: Marcel Suleiman, Francesca Demaria, Cristina Zimmardi, Boris Alexander Kolvenbach & Philippe François-Xavier Corvini
Publicado en: Applied Microbiology and Biotechnology, 2023, ISSN 2191-0855
Editor: Springer Nature
DOI: 10.1007/s00253-023-12677-z

In Vivo Sampling of Intracellular Heterogeneity of Pseudomonas putida Enables Multiobjective Optimization of Genetic Devices

Autores: Hueso-Gil A, Calles B, de Lorenzo V.
Publicado en: ACS Synthetic Biology, 2023, ISSN 2161-5063
Editor: American Chemical Society
DOI: 10.1021/acssynbio.3c00009

Pollutant profile complexity governs wastewater removal of recalcitrant pharmaceuticals

Autores: Marcel Suleiman1, Natalie Le Lay1, Francesca Demaria1, Boris A. Kolvenbach1, Mariana S. Cretoiu2, Owen L. Petchey3, Alexandre Jousset2,4,*, Philippe F.-X. Corvin
Publicado en: ISME Journal, 2024, ISSN 1751-7370
Editor: Oxford University Press
DOI: 10.1093/ismejo/wrae033

Journal of Hazardous Materials

Autores: Hairong Ma, Anna N. Khusnutdinova, Sofia Lemak, Tatyana N. Chernikova, Olga V. Golyshina, David Almendral, Manuel Ferrer, Peter N. Golyshin, Alexander F. Yakunin
Publicado en: Journal of Hazardous Materials, Edición 481, 2025, ISSN 0304-3894
Editor: Elsevier
DOI: 10.1016/J.JHAZMAT.2024.136540

AND Logic Based on Suppressor tRNAs Enables Stringent Control of Sliding Base Editors in <i>Pseudomonas putida</i>

Autores: Elena Velázquez, Víctor de Lorenzo
Publicado en: ACS Synthetic Biology, Edición 13, 2024, ISSN 2161-5063
Editor: American Chemical Society (ACS)
DOI: 10.1021/ACSSYNBIO.4C00640

Carlos Asensio and the dawn of molecular microbial ecology

Autores: Víctor de Lorenzo; Fernando Baquero; Alfredo Aguilar
Publicado en: International Microbiology, 2024, ISSN 1618-1905
Editor: Springer
DOI: 10.1007/S10123-024-00596-6

ACS Synthetic Biology

Autores: Elena Velázquez; Víctor de Lorenzo
Publicado en: ACS Synthetic Biology, 2024, ISSN 2161-5063
Editor: ACS Publications
DOI: 10.1021/ACSSYNBIO.4C00640

Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores

Autores: Ana Robles-Martín, Ana, Rafael Amigot-Sánchez, Laura Fernandez-Lopez, Jose L. Gonzalez-Alfonso, Sergi Roda, Víctor Alcolea-Rodriguez, Diego Heras-Márquez, David Almendral, Cristina Coscolín, Francisco J. Plou, Raquel Portela, Miguel A. Bañares, Álvaro Mar
Publicado en: Nature Catalysis, 2023, ISSN 2520-1158
Editor: Springer Nature
DOI: 10.1038/S41929-023-01048-6

Other (2)

The principle of uncertainty in biology: Will machine learning/artificial intelligence lead to the end of mechanistic studies?

Autores: de Lorenzo V.
Publicado en: PLoS biology, 2024, ISSN 1545-7885
Editor: Public Library of Science

Pseudomonas putida as a synthetic biology chassis and a metabolic engineering platform

Autores: Esteban Martínez-García, Víctor de Lorenzo
Publicado en: Current Opinion in Biotechnology, 2024, ISSN 0958-1669
Editor: Elsevier