New system-driven bioremediation of polluted habitats and environment

Informazioni relative al progetto

NYMPHE

ID dell’accordo di sovvenzione: 101060625

DOI

10.3030/101060625

Data della firma CE 5 Dicembre 2022

Data di avvio 1 Gennaio 2023

Data di completamento 31 Dicembre 2026

Finanziato da

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Costo totale

€ 5 702 902,80

Contributo UE

€ 5 499 973,50

Coordinato da

ALMA MATER STUDIORUM - UNIVERSITA DI BOLOGNA
Italy

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Websites, patent fillings, videos etc. (1)

Project website

Project website online – linked to Task 5.4

Documents, reports (4)

Chemical and toxicological characterization of all matrices from contaminated sites

Report on the initial chemical and toxicological characterization of all matrices from the Nymphe contaminated sites – linked to Task 4.2

Initial dissemination and communication plan

Preparation of a detailed plan outlining main target groups, communication channels, project outcomes to be disseminated and dissemination strategies – linked to Task 5.2

Report on the sites ready for field experiments

Report on the sites ready for field experiments, including site characterization for in situ remediation, infrastructures and permits – linked to Task 4.1

Report on stakeholder analysis and mapping

Report on stakeholder analysis and mapping – linked to Task 5.1

Data Management Plan (1)

Initial Data Management Plan

The DMP will provide the identification elements and the descriptions of the data sets and will include details regarding how the research data will be handled during the project and how they will be preserved after it is completed. It will specify which methodologies and standards will be used in the data creation and management and how and when the data will be shared and made open for re-use – linked to Task 5.6

Pubblicazioni

Conference proceedings (17)

Synergistic Microplastic Degradation In Wastewater: How Can Electrochemical Oxidation Enhance Biodegradation?

Autori: Ceballos-Escalera A., Pous N., Bañeras L., Balaguer MD., Puig S.
Pubblicato in: 9th World Conference of the International Society for Microbial Electrochemistry and Technology (ISMET), 2025, ISBN 978-3-944280-78-3
Editore: Helmholtz-Zentrum für Umweltforschung
DOI: 10.5281/ZENODO.18299899

Plant Growth-Promoting Bacteria for Improved Phytoremediation of Contaminated Sites

Autori: Jakubová L., Červená J., Šmrhová T., Mašek F., Šuman J., Uhlík O.
Pubblicato in: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editore: Technical University of Crete
DOI: 10.5281/ZENODO.18269576

Microbial community assemblies for the biodegradation of mixed hydrocarbon pollutants in industrial contaminated soil.

Autori: Musmeci E, Giovanetti L, Palladino G, Candela M, Fava F, Biagi E, Zanaroli G
Pubblicato in: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editore: Technical University of Crete
DOI: 10.5281/ZENODO.18259733

NYMPHE Project: Eni Rewind’s bioremediation field tests

Autori: Barompriori M, Decima MA, Santoro F, Villani F
Pubblicato in: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editore: Technical University of Crete
DOI: 10.5281/ZENODO.18377596

Guild composition of rhizosphere bacteria exploitable for hydrocarbon bioremediation is driven by ecological interactions

Autori: Francesca Mapelli, Eleonora Rolli, Gabriele Capriglia, Luigi Bazzana, Elisa Ghitti, Lorenzo Vergani, Eliana Musmeci, Elena Biagi, Giulio Zanaroli, Sara Borin
Pubblicato in: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editore: Technical University of Crete

Adsorptive removal of Contaminants of Emerging Concern from Urban Wastewater using Bivalve Shells

Autori: Jesus F, Pascoal E, Calisto V, Blasco-Gómez R, Esteve-Núñez A, Jiménez-Conde M, Blázquez-Hernández S, Heras IL, Vosáhlova S, Kodešová T, Kyclt R, Pereira JL
Pubblicato in: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editore: Technical University of Crete
DOI: 10.5281/ZENODO.18268533

Innovative Approaches to Engineer Enzymes for Plastic Recycling Solutions

Autori: Vidal P, Gimenez J, Romero S… Ferrer M
Pubblicato in: 17th International Symposium on Biocatalysis and Biotransformations (Biotrans 2025), 2025
Editore: LD Organisation srl
DOI: 10.5281/ZENODO.18329768

De la Naturaleza a la Inteligencia Artificial: Diseñando la Biocatálisis del futuro

Autori: Ferrer, M., Vidal Ramon, P., Fernandez-Lopez, L., Robles Martín, A., Muñoz Tafalla, R., Gimenez Dejoz, J., Bargiela, R., & Guallar, V.
Pubblicato in: Congress of the Spanish Society of Biotechnology (Biotec2025), 2025
Editore: Universitata Autonoma de Barcelona
DOI: 10.5281/ZENODO.18373122

Unravelling the petroleum hydrocarbon-triggered shift in root exudation of sunflower (Helianthus annuus)

Autori: Elisa Ghitti, Eleonora Rolli, Francesca Mapelli, Gabriele Capriglia, Luigi Bazzana, Leilei Zhang, Luigi Lucini, Sara Borin
Pubblicato in: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editore: Technical University of Crete

Mining of toluene and xylene degraders from contaminated soil

Autori: Smrhova T. ,Masek F., Suman J., Strejcek M., Rippelova V., McGachy L., Uhlik O.
Pubblicato in: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editore: Technical University of Crete
DOI: 10.5281/ZENODO.18299124

Microbial electrochemistry in bioremediation

Autori: Puig, S., Bañeras, Ll., Pous, N., Balaguer, M.D. and Ceballos-Escalera, A
Pubblicato in: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editore: Technical University of Crete
DOI: 10.5281/ZENODO.18299712

Pesticide and plastic degradation by soil microorganisms

Autori: S. Monogyiou, K. Karkanorachaki, E. Syranidou, P. Seridou, and N. Kalogerakis
Pubblicato in: 18th International Symposium on Persistent Toxic Substances & Health, 2024, ISBN 978-618-5558-08-6
Editore: Technical University of Crete
DOI: 10.5281/ZENODO.18385158

Removal of antibiotic contaminants by microalgae

Autori: P. Seridou, S. Monogyiou, E. Syranidou and N. Kalogerakis
Pubblicato in: 18th International Symposium on Persistent Toxic Substances & Health, 2024, ISBN 978-618-5558-08-6
Editore: Technical University of Crete
DOI: 10.5281/ZENODO.18385090

Biocatalytic Strategies for the Degradation of Emerging Micropollutants: From Nanoplastics to Pharmaceuticals

Autori: Cervantes Dominguez, F. V., Almendral Nieto, D., Chernikova, T., Bargiela, R., Golyshin, P., & Ferrer, M.
Pubblicato in: Congress of the Spanish Society of Biotechnology (Biotec2025), 2025
Editore: Universitata autonoma de Barcelona
DOI: 10.5281/ZENODO.18373505

Novel biocatalyst for sustainable plastic removal

Autori: Vidal P
Pubblicato in: Congress of the Spanish Society of Catalysis (SECAT2025), 2025
Editore: University of Alcalà
DOI: 10.5281/ZENODO.18325332

Non-flavonoid root exudates shaped the plant ‘cry-for-help’ under polychlorinated biphenyl stress

Autori: Eleonora Rolli, Elisa Ghitti, Lorenzo Vergani, Francesca Mapelli, Sara Borin
Pubblicato in: 9th European Bioremediation Conference (EBCIX), 2025, ISBN 978-618-5558-13-0
Editore: Technical University of Crete

Potential of Bivalves for Bioremediation of Wastewater – Comparative Assessment of Biofiltration and Biosorption

Autori: Jesus F, Pascoal E, Sousa E, Abreu G, Mantas D, Monteiro L, Sousa M, Calisto V, Pereira JL
Pubblicato in: SETAC Europe 35th Annual Meeting, 2025, ISSN 2310-3043
Editore: SOCIETY OF ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY
DOI: 10.5281/ZENODO.18269141

Peer reviewed articles (21)

Engineering Escherichia coli for polyethylene terephthalate powder biodegradation via computational rewiring of an outer membrane protein

Autori: Joan Giménez-Dejoz, Paula Vidal, Sonia Romero, David Almendral, Miguel Luengo, Mireia Martinez-Sugrañes, Jose L. Gonzalez-Alfonso, Ana Robles-Martín, Francisco J. Plou, Rafael Bargiela, Martin Floor, Manuel Ferrer, Víctor Guallar, Laura Fernandez-Lopez
Pubblicato in: iScience, 2026, ISSN 2589-0042
Editore: Elsevier
DOI: 10.5281/ZENODO.17578239

Computationally guided genome rewiring of Escherichia coli and its application for nanopolyethylene terephthalate (PET) biodegradation and upcycling

Autori: Vidal, Paula; Giménez-Dejoz, Joan; Fernandez-Lopez, Laura; Romero, Sonia; Nazemi, Seyed Amirabbas; Luengo, Miguel; Gonzalez-Alfonso, Jose L.; Martinez-Sugrañes, Mireia; Robles-Martín, Ana; Almendral, David; Roda, Sergi; Pérez-García, Pablo; Kruse, Luzie; Jaeger, Karl-Erich; Streit, Wolfgang R.; Plou, Francisco J.; Floor, Martin; Shahgaldian, Patrick; Bargiela, Rafael; Guallar, Víctor; Ferrer, Manuel
Pubblicato in: Trends in Biotechnology, 2025, ISSN 1879-3096
Editore: Cell Press
DOI: 10.5281/ZENODO.12568116

The Structural Permissiveness of Triosephosphate Isomerase (TpiA) of <i>Escherichia coli</i>

Autori: Belén Calles, Borja Pitarch, Víctor de Lorenzo
Pubblicato in: ChemBioChem, Numero 26, 2025, ISSN 1439-4227
Editore: Wiley
DOI: 10.1002/CBIC.202400863

Pavlovian‐Type Learning in Environmental Bacteria: Regulation of Herbicide Resistance by Arsenic in <scp> <i>Pseudomonas putida</i> </scp>

Autori: David Paez‐Espino; Gonzalo Durante‐Rodríguez; Elena Alonso Fernandes; Manuel Carmona; Victor de Lorenzo
Pubblicato in: Environmental Microbiology, 2024, ISSN 1462-2920
Editore: Wiley
DOI: 10.1111/1462-2920.70012

Polychlorinated biphenyls modify Arabidopsis root exudation pattern to accommodate degrading bacteria, showing strain and functional trait specificity

Autori: Rolli E., Ghitti E, Mapelli F., Borin S.
Pubblicato in: Frontiers in plant science, 2024, ISSN 1664-462X
Editore: Lausanne Frontiers Media
DOI: 10.3389/fpls.2024.1429096

Differential effect of monoterpenes and flavonoids on the transcription of aromatic ring-hydroxylating dioxygenase genes in Rhodococcus opacus C1 and Rhodococcus sp. WAY2

Autori: Zubrova, Andrea; Tadrosová, Manuela; Semerád, Jaroslav; Cajthaml, Tomas; Pajer, Petr; Strejcek, Michal; Suman, Jachym; Uhlik, Ondrej
Pubblicato in: Microbial Genomics, 2025, ISSN 2057-5858
Editore: Microbiology Society
DOI: 10.5281/ZENODO.15090620

Pressure-dependent growth controls 3D architecture of Pseudomonas putida microcolonies

Autori: Juhyun Kim, Víctor de Lorenzo, Ángel Goñi-Moreno
Pubblicato in: Environmental Microbiology Reports, 2023, ISSN 1758-2229
Editore: Wiley
DOI: 10.1111/1758-2229.13182

ChemCatChem

Autori: Paula Vidal, Ana Robles‐Martín, Laura Fernandez‐Lopez, Jose L. Gonzalez‐Alfonso, David Almendral, Ruben Muñoz‐Tafalla, Francisco J. Plou, Víctor Guallar, Manuel Ferrer
Pubblicato in: ChemCatChem, Numero 16, 2025, ISSN 1867-3880
Editore: Wiley - VCH Verlag GmbH & CO. KGaA
DOI: 10.1002/CCTC.202400765

Thermophilic compost bacteria as a promising approach for removal of diclofenac and related pharmaceuticals from wastewater

Autori: Francesca Demaria, Ramona Blattner, Chasper Puorger, Boris Kolvenbach, Mariana S Cretoiu, Timm Hettich, Philippe Corvini, Georg Lipps, Marcel Suleiman
Pubblicato in: Water Research, ISSN 1879-2448
Editore: Elsevier
DOI: 10.1016/J.WATRES.2025.124629

Embedding a feruloyl esterase active site into a thermophilic endoxylanase scaffold for the degradation of feruloylated xylans

Autori: Rubén Muñoz-Tafalla; Isabel Cea-Rama; Fadia V. Cervantes; Jose L. Gonzalez-Alfonso; Francisco J. Plou; Julio Polaina; Julia Sanz-Aparicio; Manuel Ferrer; Víctor Guallar; David Talens-Perales
Pubblicato in: Computational and Structural Biotechnology Journal, 2025, ISSN 2001-0370
Editore: Elsevier
DOI: 10.1016/J.CSBJ.2025.09.003

Penitentiaries: Bringing microbiological literacy to the fringes of society

Autori: Víctor de Lorenzo
Pubblicato in: Microbial Biotechnology, 2024, ISSN 1751-7915
Editore: Wiley
DOI: 10.1111/1751-7915.70052

Analyzing microbial communities and their biodegradation of multiple pharmaceuticals in membrane bioreactors

Autori: Marcel Suleiman, Francesca Demaria, Cristina Zimmardi, Boris Alexander Kolvenbach & Philippe François-Xavier Corvini
Pubblicato in: Applied Microbiology and Biotechnology, 2023, ISSN 2191-0855
Editore: Springer Nature
DOI: 10.1007/s00253-023-12677-z

In Vivo Sampling of Intracellular Heterogeneity of Pseudomonas putida Enables Multiobjective Optimization of Genetic Devices

Autori: Hueso-Gil A, Calles B, de Lorenzo V.
Pubblicato in: ACS Synthetic Biology, 2023, ISSN 2161-5063
Editore: American Chemical Society
DOI: 10.1021/acssynbio.3c00009

Pollutant profile complexity governs wastewater removal of recalcitrant pharmaceuticals

Autori: Suleiman M, Le Lay N, Demaria F, Kolvenbach BA, Cretoiu MS, Petchey OL, Jousset A, Corvini PF
Pubblicato in: ISME Journal, 2024, ISSN 1751-7370
Editore: Oxford University Press
DOI: 10.1093/ISMEJO/WRAE033

Journal of Hazardous Materials

Autori: Hairong Ma, Anna N. Khusnutdinova, Sofia Lemak, Tatyana N. Chernikova, Olga V. Golyshina, David Almendral, Manuel Ferrer, Peter N. Golyshin, Alexander F. Yakunin
Pubblicato in: Journal of Hazardous Materials, Numero 481, 2025, ISSN 0304-3894
Editore: Elsevier
DOI: 10.1016/J.JHAZMAT.2024.136540

Removal of contaminants from wastewater using the bivalve Corbicula fluminea - Comparative assessment of biofiltration and biosorption

Autori: Jesus F, Pascoal E, Sousa EML, Mantas D, Sousa M, Vaz BMC, Gonçalves FJM, Coutinho JAP, Ventura SPM, Calisto V, Pereira JL
Pubblicato in: Journal of Environmental Management, 2025, ISSN 1095-8630
Editore: Elsevier
DOI: 10.1016/J.JENVMAN.2025.128039

AND Logic Based on Suppressor tRNAs Enables Stringent Control of Sliding Base Editors in <i>Pseudomonas putida</i>

Autori: Elena Velázquez, Víctor de Lorenzo
Pubblicato in: ACS Synthetic Biology, Numero 13, 2024, ISSN 2161-5063
Editore: American Chemical Society (ACS)
DOI: 10.1021/ACSSYNBIO.4C00640

Carlos Asensio and the dawn of molecular microbial ecology

Autori: Víctor de Lorenzo; Fernando Baquero; Alfredo Aguilar
Pubblicato in: International Microbiology, 2024, ISSN 1618-1905
Editore: Springer
DOI: 10.1007/S10123-024-00596-6

Pseudomonas putida as a synthetic biology chassis and a metabolic engineering platform

Autori: Martínez-García E, de Lorenzo V
Pubblicato in: Current Opinion in Biotechnology, 2024, ISSN 0958-1669
Editore: Elsevier
DOI: 10.1016/J.COPBIO.2023.103025

Phenol-driven cometabolic degradation of cis-1,2-dichloroethene (cDCE): insights from Acinetobacter pittii and Ectopseudomonas alcaliphila

Autori: Miguel Desmarais; Serena Fraraccio; Jakub Ridl; Jachym Suman; Andre Perez-Potti; Kenneth A. Dawson; Iva Dolinova; Lenka McGachy; Miluse Hradilova; Alena Sevcu; Michal Strejcek; Ondrej Uhlik
Pubblicato in: Environmental Sciences Europe, 2025, ISSN 2190-4715
Editore: Springer
DOI: 10.1186/S12302-025-01237-Z

Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores

Autori: Ana Robles-Martín, Ana, Rafael Amigot-Sánchez, Laura Fernandez-Lopez, Jose L. Gonzalez-Alfonso, Sergi Roda, Víctor Alcolea-Rodriguez, Diego Heras-Márquez, David Almendral, Cristina Coscolín, Francisco J. Plou, Raquel Portela, Miguel A. Bañares, Álvaro Mar
Pubblicato in: Nature Catalysis, 2023, ISSN 2520-1158
Editore: Springer Nature
DOI: 10.1038/S41929-023-01048-6

Thesis and dissertations (7)

Assemblaggio di comunità microbiche e monitoraggio della biodegradazione di idrocarburi alifatici e aromatici in matrici ambientali contaminate-EN:Assembly of microbial communities and monitoring of the biodegradation of aliphatic and aromatic hydrocarbon

Autori: Benzi Giuly
Pubblicato in: 2025
Editore: University of Bologna
DOI: 10.5281/ZENODO.18377568

Impact of Earthworms on pesticide degrading microorganisms - Der Einfluss von Regenwürmern auf pestizidabbauende Mikroorganismen

Autori: Julika Reddig
Pubblicato in: 2024
Editore: LUH-Institute of Microbiology
DOI: 10.5281/ZENODO.18385808

Development of an In Situ Approach for Monitoring the Biodegradation of Emerging Contaminants in Oxic/Anoxic Conditions

Autori: Paridhi Soni
Pubblicato in: 2024
Editore: Leibniz University Hannover - Institut of Microbiology
DOI: 10.5281/ZENODO.18385878

Charakterizace bakteriálních izolátů ze zeminy kontaminované petrochemickým průmyslem degradujících toluen a xylen (English: Characterization of toluene- and xylene-degrading bacterial isolates from soil contaminated by the petroleum industry)

Autori: František Mašek
Pubblicato in: 2025
Editore: University of Chemistry and Technology, Prague, Department of Biochemistry and Microbiology

Enhancing phthalate and phenol degradation in environmental bacteria via pSEVA428-ACBE3 induced random mutagenesis.

Autori: Josep Maria Trullols Martínez
Pubblicato in: 2025
Editore: Universiotat deGirona, Department of Biology

ENRICHMENT, ISOLATION AND CHARACTERIZATION OF PHARMACEUTICAL-DEGRADING BACTERIA FOR BIOFILM-MEDIATED BIOREMEDIATION IN THE ERPE RIVER HYPORHEIC ZONE

Autori: Sara Di Goia
Pubblicato in: 2025
Editore: University of Milan
DOI: 10.5281/ZENODO.18385648

Avaliação do potencial de bivalves para o tratamento de águas residuais [EN transl: Assessment of the potential of bivalves for wastewater treatment]

Autori: Pascoal, Érica Tavares
Pubblicato in: 2024
Editore: University of Aveiro, Department of Biology

Other (1)

The principle of uncertainty in biology: Will machine learning/artificial intelligence lead to the end of mechanistic studies?

Autori: de Lorenzo V.
Pubblicato in: PLoS biology, 2024, ISSN 1545-7885
Editore: Public Library of Science

Book chapters (1)

Metagenomic protocols and strategies.

Autori: Bargiela R, Méndez-García C, Martínez-Martínez M, Ferrer M
Pubblicato in: 2018
Editore: Elsevier
DOI: 10.1016/B978-0-323-91631-8.00018-4