New system-driven bioremediation of polluted habitats and environment

Informations projet

NYMPHE

N° de convention de subvention: 101060625

DOI

10.3030/101060625

Date de signature de la CE 5 Decembre 2022

Date de début 1 Janvier 2023

Date de fin 31 Decembre 2026

Financé au titre de

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Coût total

€ 5 702 902,80

Contribution de l’UE

€ 5 499 973,50

Coordonné par

ALMA MATER STUDIORUM - UNIVERSITA DI BOLOGNA
Italy

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Websites, patent fillings, videos etc. (1)

Project website

Project website online – linked to Task 5.4

Documents, reports (4)

Chemical and toxicological characterization of all matrices from contaminated sites

Report on the initial chemical and toxicological characterization of all matrices from the Nymphe contaminated sites – linked to Task 4.2

Initial dissemination and communication plan

Preparation of a detailed plan outlining main target groups, communication channels, project outcomes to be disseminated and dissemination strategies – linked to Task 5.2

Report on the sites ready for field experiments

Report on the sites ready for field experiments, including site characterization for in situ remediation, infrastructures and permits – linked to Task 4.1

Report on stakeholder analysis and mapping

Report on stakeholder analysis and mapping – linked to Task 5.1

Data Management Plan (1)

Initial Data Management Plan

The DMP will provide the identification elements and the descriptions of the data sets and will include details regarding how the research data will be handled during the project and how they will be preserved after it is completed. It will specify which methodologies and standards will be used in the data creation and management and how and when the data will be shared and made open for re-use – linked to Task 5.6

Publications

Peer reviewed articles (16)

Computationally guided genome rewiring of Escherichia coli and its application for nanopolyethylene terephthalate (PET) biodegradation and upcycling

Auteurs: Vidal, Paula; Giménez-Dejoz, Joan; Fernandez-Lopez, Laura; Romero, Sonia; Nazemi, Seyed Amirabbas; Luengo, Miguel; Gonzalez-Alfonso, Jose L.; Martinez-Sugrañes, Mireia; Robles-Martín, Ana; Almendral, David; Roda, Sergi; Pérez-García, Pablo; Kruse, Luzie; Jaeger, Karl-Erich; Streit, Wolfgang R.; Plou, Francisco J.; Floor, Martin; Shahgaldian, Patrick; Bargiela, Rafael; Guallar, Víctor; Ferrer, Manuel
Publié dans: Trends in Biotechnology, 2025, ISSN 1879-3096
Éditeur: Cell Press
DOI: 10.5281/ZENODO.12568116

The Structural Permissiveness of Triosephosphate Isomerase (TpiA) of <i>Escherichia coli</i>

Auteurs: Belén Calles, Borja Pitarch, Víctor de Lorenzo
Publié dans: ChemBioChem, Numéro 26, 2025, ISSN 1439-4227
Éditeur: Wiley
DOI: 10.1002/CBIC.202400863

Pavlovian‐Type Learning in Environmental Bacteria: Regulation of Herbicide Resistance by Arsenic in <scp> <i>Pseudomonas putida</i> </scp>

Auteurs: David Paez‐Espino; Gonzalo Durante‐Rodríguez; Elena Alonso Fernandes; Manuel Carmona; Victor de Lorenzo
Publié dans: Environmental Microbiology, 2024, ISSN 1462-2920
Éditeur: Wiley
DOI: 10.1111/1462-2920.70012

Polychlorinated biphenyls modify Arabidopsis root exudation pattern to accommodate degrading bacteria, showing strain and functional trait specificity

Auteurs: Rolli E., Ghitti E, Mapelli F., Borin S.
Publié dans: Frontiers in plant science, 2024, ISSN 1664-462X
Éditeur: Lausanne Frontiers Media
DOI: 10.3389/fpls.2024.1429096

Pressure-dependent growth controls 3D architecture of Pseudomonas putida microcolonies

Auteurs: Juhyun Kim, Víctor de Lorenzo, Ángel Goñi-Moreno
Publié dans: Environmental Microbiology Reports, 2023, ISSN 1758-2229
Éditeur: Wiley
DOI: 10.1111/1758-2229.13182

ChemCatChem

Auteurs: Paula Vidal, Ana Robles‐Martín, Laura Fernandez‐Lopez, Jose L. Gonzalez‐Alfonso, David Almendral, Ruben Muñoz‐Tafalla, Francisco J. Plou, Víctor Guallar, Manuel Ferrer
Publié dans: ChemCatChem, Numéro 16, 2025, ISSN 1867-3880
Éditeur: Wiley - VCH Verlag GmbH & CO. KGaA
DOI: 10.1002/CCTC.202400765

Embedding a feruloyl esterase active site into a thermophilic endoxylanase scaffold for the degradation of feruloylated xylans

Auteurs: Rubén Muñoz-Tafalla; Isabel Cea-Rama; Fadia V. Cervantes; Jose L. Gonzalez-Alfonso; Francisco J. Plou; Julio Polaina; Julia Sanz-Aparicio; Manuel Ferrer; Víctor Guallar; David Talens-Perales
Publié dans: Computational and Structural Biotechnology Journal, 2025, ISSN 2001-0370
Éditeur: Elsevier
DOI: 10.1016/J.CSBJ.2025.09.003

Penitentiaries: Bringing microbiological literacy to the fringes of society

Auteurs: Víctor de Lorenzo
Publié dans: Microbial Biotechnology, 2024, ISSN 1751-7915
Éditeur: Wiley
DOI: 10.1111/1751-7915.70052

Analyzing microbial communities and their biodegradation of multiple pharmaceuticals in membrane bioreactors

Auteurs: Marcel Suleiman, Francesca Demaria, Cristina Zimmardi, Boris Alexander Kolvenbach & Philippe François-Xavier Corvini
Publié dans: Applied Microbiology and Biotechnology, 2023, ISSN 2191-0855
Éditeur: Springer Nature
DOI: 10.1007/s00253-023-12677-z

In Vivo Sampling of Intracellular Heterogeneity of Pseudomonas putida Enables Multiobjective Optimization of Genetic Devices

Auteurs: Hueso-Gil A, Calles B, de Lorenzo V.
Publié dans: ACS Synthetic Biology, 2023, ISSN 2161-5063
Éditeur: American Chemical Society
DOI: 10.1021/acssynbio.3c00009

Pollutant profile complexity governs wastewater removal of recalcitrant pharmaceuticals

Auteurs: Marcel Suleiman1, Natalie Le Lay1, Francesca Demaria1, Boris A. Kolvenbach1, Mariana S. Cretoiu2, Owen L. Petchey3, Alexandre Jousset2,4,*, Philippe F.-X. Corvin
Publié dans: ISME Journal, 2024, ISSN 1751-7370
Éditeur: Oxford University Press
DOI: 10.1093/ismejo/wrae033

Journal of Hazardous Materials

Auteurs: Hairong Ma, Anna N. Khusnutdinova, Sofia Lemak, Tatyana N. Chernikova, Olga V. Golyshina, David Almendral, Manuel Ferrer, Peter N. Golyshin, Alexander F. Yakunin
Publié dans: Journal of Hazardous Materials, Numéro 481, 2025, ISSN 0304-3894
Éditeur: Elsevier
DOI: 10.1016/J.JHAZMAT.2024.136540

AND Logic Based on Suppressor tRNAs Enables Stringent Control of Sliding Base Editors in <i>Pseudomonas putida</i>

Auteurs: Elena Velázquez, Víctor de Lorenzo
Publié dans: ACS Synthetic Biology, Numéro 13, 2024, ISSN 2161-5063
Éditeur: American Chemical Society (ACS)
DOI: 10.1021/ACSSYNBIO.4C00640

Carlos Asensio and the dawn of molecular microbial ecology

Auteurs: Víctor de Lorenzo; Fernando Baquero; Alfredo Aguilar
Publié dans: International Microbiology, 2024, ISSN 1618-1905
Éditeur: Springer
DOI: 10.1007/S10123-024-00596-6

ACS Synthetic Biology

Auteurs: Elena Velázquez; Víctor de Lorenzo
Publié dans: ACS Synthetic Biology, 2024, ISSN 2161-5063
Éditeur: ACS Publications
DOI: 10.1021/ACSSYNBIO.4C00640

Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores

Auteurs: Ana Robles-Martín, Ana, Rafael Amigot-Sánchez, Laura Fernandez-Lopez, Jose L. Gonzalez-Alfonso, Sergi Roda, Víctor Alcolea-Rodriguez, Diego Heras-Márquez, David Almendral, Cristina Coscolín, Francisco J. Plou, Raquel Portela, Miguel A. Bañares, Álvaro Mar
Publié dans: Nature Catalysis, 2023, ISSN 2520-1158
Éditeur: Springer Nature
DOI: 10.1038/S41929-023-01048-6

Other (2)

The principle of uncertainty in biology: Will machine learning/artificial intelligence lead to the end of mechanistic studies?

Auteurs: de Lorenzo V.
Publié dans: PLoS biology, 2024, ISSN 1545-7885
Éditeur: Public Library of Science

Pseudomonas putida as a synthetic biology chassis and a metabolic engineering platform

Auteurs: Esteban Martínez-García, Víctor de Lorenzo
Publié dans: Current Opinion in Biotechnology, 2024, ISSN 0958-1669
Éditeur: Elsevier