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INNOVATIVE TOOLS FOR SUSTAINABLE EXPLORATION OF MARINE MICROBIOMINNOVATIVE TOOLS FOR SUSTAINABLE EXPLORATION OF MARINE MICROBIOMES: TOWARDS A CIRCULAR BLUE BIOECONOMY AND HEALTHIER MARINE ENVIRONMENTS

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Initial technology watch and benchmarking report (opens in new window)

Report compiling information related to the technology areas involved in the project (e.g., bioinformatics, microbiome cultivation and biodiscovery strategies), incl. latest innovations and emerging trends and developments. This study will be conducted through the revision of the most recent patents and relevant publications in the research field of marine microbiomes. This deliverable is the result of T6.3

HR Policy (opens in new window)

Binding Human resources (HR) policy, compliant with the European charter for Researchers the Code of Conduct for the Recruitment of Researchers, and national regulations, which will observe strict merit criteria and non-discrimination during recruitment, as well as family aspects of seconded/recruited personnel. This deliverable is the result of T1.1

Mid term policy brief (opens in new window)

Summary of evidences from results, technical drivers or barriers encountered throughput the project to support EU policy developments on microbiome research at M24. This deliverable may be part of the clustering activities and may include aspects related ABS, DSI and IPR in microbiome research from the workshop organized in T6.5.

Best Practices of Communication and Dissemination Actions (opens in new window)

Highlights and examples of good practices of the Communication and Dissemination activities up the first 30 months including e.g. their objective, description, target audience, implementation and impact. This deliverable is the result of T7.1, T7.2. and T7.3.

Initial Dissemination and Communication Plan (opens in new window)

Strategy for the dissemination and communication activities, including how target audiences will be approached and a timeline for the content creation and publication. This deliverable is the result of T7.1

Certification for biosafety and GMO manipulation (opens in new window)

Compilation of required certification for all partners involved in chemical and biological work, involving manipulation of (genetically modified) microorganisms, issue by the relevant biosafety offices and compliant with the respective national regulations of each beneficiary. This deliverable is the result of T1.5

Recommendations for data interoperability (opens in new window)

Report on results of scaling workflow in cloud environments such as ELIXIR or EOSC and on the hackathons organized with national and/or international networks. The report will include a set of recommendations for optimizing CPU and storage utilization of cloud resources for metagenome analyses. This deliverable is the result of T3.6.

Intermediate DMP (opens in new window)

Data management plan (FAIR-formatted) that describes data organisation and adequate provisions for its access, preservation, curation, sharing, and eventual deletion and curation at month 36 of the project. This deliverable is the result of T1.2

Initial DMP (opens in new window)

Data management plan (FAIR-formatted) that describes data organisation and curation, and adequate provisions for its access, preservation, sharing, and eventual deletion at month 6 of the project. This deliverable is the result of T1.2

Website of the project (opens in new window)

BLUETOOLS website, accessible to the wide public and presented in an intuitive and visually attractive manner. The website will act as a main conduit of communication with the general public and will include project information cleared for dissemination and communication. This deliverable is the result of T7.3

Publications

Metagenomics-Toolkit: the flexible and efficient cloud-based metagenomics workflow featuring machine learning-enabled resource allocation (opens in new window)

Author(s): Peter Belmann; Benedikt Osterholz; Nils Kleinboelting; Alfred Puehler; Andreas Schlueter; Alexander Sczyrba
Published in: NAR Genomics and Bioinformatics, 2024, ISSN 2631-9268
Publisher: Oxford Academic
DOI: 10.1093/NARGAB/LQAF093

BioData Mining (opens in new window)

Author(s): Tubbesing, Tom Jonas; Schlüter, Andreas; Sczyrba, Alexander
Published in: BioData Mining, 2025, ISSN 1756-0381
Publisher: BioMed Central
DOI: 10.1186/S13040-025-00453-W

Journal of the American Chemical Society (opens in new window)

Author(s): Matthew Penner; Oskar James Klein; Maximilian Gantz; Friederike E. H. Nintzel; Anne-Cathrin Prowald; Sally Boss; Paul Barker; Paul Dupree; Florian Hollfelder
Published in: Journal of the American Chemical Society, 2023, ISSN 0002-7863
Publisher: American Chemical Society
DOI: 10.1101/2023.11.22.568356

Accessible biocatalyst development by rapid in vitro semi-rational engineering (RISE) of enzymes (opens in new window)

Author(s): András Telek, Viktor Zsolt Gaják, Gergő Dargó, Jan Mičan, David Bednář, Beáta G. Vértessy, Gábor Tasnádi
Published in: iScience, Issue 29, 2026, ISSN 2589-0042
Publisher: Elsevier BV
DOI: 10.1016/J.ISCI.2025.114257

tRNA queuosine modification is involved in biofilm formation and virulence in bacteria (opens in new window)

Author(s): Jorge Díaz-Rullo;José Eduardo González-Pastor
Published in: Nucleic Acids Research, Issue 51(18), 2023, ISSN 1362-4962
Publisher: Oxford University Press
DOI: 10.1093/nar/gkad667

MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration (opens in new window)

Author(s): Zdouc, Mitja M.; Blin, Kai; Louwen, Nico L. L.; Navarro, Jorge; Loureiro, Catarina; Bader, Chantal D.; Bailey, Constance B.; Barra, Lena; Booth, Thomas J.; Bozhüyük, Kenan A. J.; Cediel-Becerra, José D. D.; Charlop-Powers, Zachary; Chevrette, Marc G.; Chooi, Yit Heng; DAgostino, Paul M.; de Rond, Tristan; Pup, Elena Del; Duncan, Katherine R.; Gu, Wenjia; Hanif, Novriyandi; Helfrich, Eric J. N.; Jenner, Matthew; Katsuyama, Yohei; Korenskaia, Aleksandra; Krug, Daniel; Libis, Vincent; Lund, George A.; Mantri, Shrikant; Morgan, Kalindi D.; Owen, Charlotte; Phan, Chin-Soon; Philmus, Benjamin; Reitz, Zachary L.; Robinson, Serina L.; Singh, Kumar Saurabh; Teufel, Robin; Tong, Yaojun; Tugizimana, Fidele; Ulanova, Dana; Winter, Jaclyn M.; Aguilar, César; Akiyama, Daniel Y.; Al-Salihi, Suhad A. A.; Alanjary, Mohammad; Alberti, Fabrizio; Aleti, Gajender; Alharthi, Shumukh A.; Arias Rojo, Mariela Y.; Arishi, Amr A.; Augustijn, Hannah E.; Avalon, Nicole E.; Avelar-Rivas, J. Abraham; Axt, Kyle K.; Barbieri, Hellen B.; Barbosa, Julio Cesar J.; Segato, Lucas Gabriel Barboza; Barrett, Susanna E.; Baunach, Martin; Beemelmanns, Christine; Beqaj, Dardan; Berger, Tim; Bernaldo-Agüero, Jordan; Bettenbühl, Sandra M.; Bielinski, Vincent A.; Biermann, Friederike; Borges, Ricardo M.; Borriss, Rainer; Breitenbach, Milena; Bretscher, Kevin M.; Brigham, Michael W.; Buedenbender, Larissa; Bulcock, Brodie W.; Cano-Prieto, Carolina; Ribeiro, João Manuel Capela Araújo; Carrion, Victor J.; Carter, Riley S.; Castelo-Branco, Raquel; Castro-Falcón, Gabriel; Chagas, Fernanda O.; Charria-Girón, Esteban; Chaudhri, Ayesha Ahmed; Chaudhry, Vasvi; Choi, Hyukjae; Choi, Yukyung; Choupannejad, Roya; Chromy, Jakub; Chue Donahey, Melinda S.; Collemare, Jérôme; Connolly, Jack A.; Creamer, Kaitlin E.; Crüsemann, Max; Cruz, Andres Arredondo; Cumsille, Andres; Dallery, Jean-Felix; Damas-Ramos, Luis Caleb; Damiani, Tito; de Kruijff, Martinus; Martín, Belén Delgado; Sala, Gerardo Della; Dillen, Jelle; Doering, Drew T.; Dommaraju, Shravan R.; Durusu, Suhan; Egbert, Susan; Ellerhorst, Mark; Faussurier, Baptiste; Fetter, Artem; Feuermann, Marc; Fewer, David P.; Foldi, Jonathan; Frediansyah, Andri; Garza, Erin A.; Gavriilidou, Athina; Gentile, Andrea; Gerke, Jennifer; Gerstmans, Hans; Gomez-Escribano, Juan Pablo; González-Salazar, Luz A.; Grayson, Natalie E.; Greco, Claudio; Gris Gomez, Juan E.; Guerra, Sebastian; Flores, Shaday Guerrero; Gurevich, Alexey; Gutiérrez-García, Karina; Hart, Lauren; Haslinger, Kristina; He, Beibei; Hebra, Teo; Hemmann, Jethro L.; Hindra, Hindra; Höing, Lars; Holland, Darren C.; Holme, Jonathan E.; Horch, Therese; Hrab, Pavlo; Hu, Jie; Huynh, Thanh-Hau; Hwang, Ji-Yeon; Iacovelli, Riccardo; Iftime, Dumitrita; Iorio, Marianna; Jayach; ran, Sidharth; Jeong, Eunah; Jing, Jiayi; Jung, Jung J.; Kakumu, Yuya; Kalkreuter, Edward; Kang, Kyo Bin; Kang, Sangwook; Kim, Wonyong; Kim, Geum Jin; Kim, Hyunwoo; Kim, Hyun Uk; Klapper, Martin; Koetsier, Robert A.; Kollten, Cassandra; Kovács, Ákos T.; Kriukova, Yelyzaveta; Kubach, Noel; Kunjapur, Aditya M.; Kushnareva, Aleksandra K.; Kust, Andreja; Lamber, Jessica; Larralde, Martin; Larsen, Niels J.; Launay, Adrien P.; Le, Ngoc-Thao-Hien; Lebeer, Sarah; Lee, Byung Tae; Lee, Kyungha; Lev, Katherine L.; Li, Shu-Ming; Li, Yong-Xin; Licona-Cassani, Cuauhtémoc; Lien, Annette; Liu, Jing; Lopez, Julius Adam V.; Machushynets, Nataliia V.; Macias, Marla I.; Mahmud, Taifo; Maleckis, Matiss; Martinez-Martinez, Añadir Maharai; Mast, Yvonne; Maximo, Marina F.; McBride, Christina M.; McLellan, Rose M.; Bhatt, Khyati Mehta; Melkonian, Chrats; Merrild, Aske; Metsä-Ketelä, Mikko; Mitchell, Douglas A.; Müller, Alison V.; Nguyen, Giang-Son; Nguyen, Hera T.; Niedermeyer, Timo H. J.; OHare, Julia H.; Ossowicki, Adam; Ostash, Bohdan O.
Published in: Nucleic Acids Research, 2024, ISSN 1362-4962
Publisher: Oxford Academic
DOI: 10.17169/REFUBIUM-47138

Distribution, abundance, and ecogenomics of the <i>Palauibacterales</i> , a new cosmopolitan thiamine-producing order within the <i>Gemmatimonadota</i> phylum (opens in new window)

Author(s): Borja Aldeguer-Riquelme; Josefa Antón; Fernando Santos
Published in: mSystems, Issue Vol. 8, No. 4, 2023, ISSN 2379-5077
Publisher: American Society for Microbiology
DOI: 10.1128/msystems.00215-23

Structural insights into light harvesting by antenna-containing rhodopsins in marine Asgard archaea (opens in new window)

Author(s): Gali Tzlil, María del Carmen Marín, Yuma Matsuzaki, Probal Nag, Shota Itakura, Yosuke Mizuno, Shunya Murakoshi, Tatsuki Tanaka, Shirley Larom, Masae Konno, Rei Abe-Yoshizumi, Ana Molina-Márquez, Daniela Bárcenas-Pérez, José Cheel, Michal Koblížek, Rosa León, Kota Katayama, Hideki Kandori, Igor Schapiro, Wataru Shihoya, Osamu Nureki, Keiichi Inoue, Andrey Rozenberg, Ariel Chazan, Oded Béjà
Published in: Nature Microbiology, Issue 10, 2025, ISSN 2058-5276
Publisher: Springer
DOI: 10.1038/S41564-025-02016-5

The coral Oculina patagonica holobiont and its response to confinement, temperature, and Vibrio infections (opens in new window)

Author(s): Martin-Cuadrado, Ana-Belen; Rubio-Portillo, Esther; Rossello, Francesc; Antón, Josefa
Published in: Microbiome, 2024, ISSN 2049-2618
Publisher: SpringerNature
DOI: 10.1186/S40168-024-01921-X

MITE: the Minimum Information about a Tailoring Enzyme database for capturing specialized metabolite biosynthesis (opens in new window)

Author(s): Adriano Rutz, Daniel Probst, César Aguilar, Daniel Y Akiyama, Fabrizio Alberti, Hannah E Augustijn, Nicole E Avalon, Christine Beemelmanns, Hellen Bertoletti Barbieri, Friederike Biermann, Alan J Bridge, Esteban Charria Girón, Russell Cox, Max Crüsemann, Paul M D’Agostino, Marc Feuermann, Jennifer Gerke, Karina Gutiérrez García, Jonathan E Holme, Ji-Yeon Hwang, Riccardo Iacovelli, Júlio César Jeronimo Barbosa, Navneet Kaur, Martin Klapper, Anna M Köhler, Aleksandra Korenskaia, Noel Kubach, Byung T Lee, Catarina Loureiro, Shrikant Mantri, Simran Narula, David Meijer, Jorge C Navarro-Muñoz, Giang-Son Nguyen, Sunaina Paliyal, Mohit Panghal, Latika Rao, Simon Sieber, Nika Sokolova, Sven T Sowa, Judit Szenei, Barbara R Terlouw, Heiner G Weddeling, Jingwei Yu, Nadine Ziemert, Tilmann Weber, Kai Blin, Justin J J van der Hooft, Marnix H Medema, Mitja M Zdouc
Published in: Nucleic Acids Research, 2025, ISSN 0305-1048
Publisher: Oxford University Press (OUP)
DOI: 10.1093/NAR/GKAF969

HulaChrimson: A Chrimson-like cation channelrhodopsin discovered using freshwater metatranscriptomics from Lake Hula (opens in new window)

Author(s): Hiroto Takahashi, Shunki Takaramoto, Takashi Nagata, Shai Fainsod, Yoshitaka Kato, Oded Béjà, Keiichi Inoue
Published in: Biophysics and Physicobiology, 2025, ISSN 2189-4779
Publisher: Biophysical Society of Japan
DOI: 10.2142/BIOPHYSICO.BPPB-V22.0014

HulaCCR1, a pump-like cation channelrhodopsin discovered in a lake microbiome (opens in new window)

Author(s): Shunki Takaramoto, Shai Fainsod, Takashi Nagata, Andrey Rozenberg, Oded Béjà, Keiichi Inoue
Published in: Journal of Molecular Biology, Issue 436, 2025, ISSN 0022-2836
Publisher: Elsevier BV
DOI: 10.1016/J.JMB.2024.168844

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