Promoting a Plant Genetic Resource Community for Europe

Projektinformationen

PRO-GRACE

ID Finanzhilfevereinbarung: 101094738

DOI

10.3030/101094738

Projekt abgeschlossen

EK-Unterschriftsdatum 12 Dezember 2022

Startdatum 1 Januar 2023

Enddatum 31 Oktober 2025

Finanziert unter

• Research infrastructures

Gesamtkosten

€ 2 847 250,00

EU-Beitrag

€ 2 847 250,00

Koordiniert durch

AGENZIA NAZIONALE PER LE NUOVE TECNOLOGIE, L'ENERGIA E LO SVILUPPO ECONOMICO SOSTENIBILE
Italy

CORDIS bietet Links zu öffentlichen Ergebnissen und Veröffentlichungen von HORIZONT-Projekten.

Links zu Ergebnissen und Veröffentlichungen von RP7-Projekten sowie Links zu einigen Typen spezifischer Ergebnisse wie Datensätzen und Software werden dynamisch von OpenAIRE abgerufen.

Leistungen

Documents, reports (24)

A blueprint for a capacity building programme for genebanks and in situ/on farm conservation networks
Methods and minimum quality standards for in situ management of PGR, including CWR and WFP
System for describing, managing and accessing in situ conserved populations an interfacing them with EURISCO
Governance structure of the proposed infrastructure
Minimum quality standards for genebank operations
A blueprint for constructing national inventories of in situ resources
Blueprint for a genebank quality certification system
Demonstration of metabolomic methods and services

Demonstration of metabolomic methods and services for the identification of metabolites relevant for plant performance and food quality, such as nutritional/antinutritional/toxic metabolites in CWR/WFP material and CWR introgressions in 2 different gene pools

Unified, crop-specific standards, protocols and descriptors for the evaluation of the phenotypes and agronomic characteristics of PGR, incorporating the ECPGR, MIAPPE, Crop Ontology EMPHASIS and final user recommendations and methodologies (version 2)
An analysis of the ethical, social and regulatory aspects of the transition of the present PGR system to an integrated pan-European Research Infrastructure
Standards for collecting and displaying phenotypic data and images
Demonstration of bioinformatic methods and services for kinship/population structure/pedigree determination, gap analyses, GWAS and QTL analyses
A system for the unique identification of PGR based both on DOIs and DNA barcoding
1st International workshop and training school on Plant Genetic Resources
2nd International workshop and training school on Plant Genetic Resources
Demonstration of DNA barcoding, reduced representation sequencing/resequencing and cytogenomic methods and services

Demonstration of DNA barcoding, reduced representation sequencing/resequencing and cytogenomic methods and services for the assessment of the genetic variability, PAVs, assisting gap analysis, ploidy/aneuploidy determination and facilitation of interspecific crossing/introgression programs

Online meeting with other research infrastructures on related domains, defining the synergies and avoiding possible areas of overlap

Online meeting with other RI to discuss synergies and avoid possible areas ofoverlap

Simplified sample collection protocols amenable to use by non-specialized personnel
Unified, crop-specific standards and protocols for the evaluation of the phenotypes and agronomic characteristics of PGR, incorporating the ECPGR, MIAPPE, Crop Ontology, EMPHASIS and final user recommendations and methodologies
Standards for collecting and displaying genetic data
Inventory of PGR information not yet represented in EURISCO and unified strategy for the interfacing of different information systems with EURISCO
Identification of the scientific services, stakeholders, promoters, and utilizers of the proposed RI (v1)
“Minimum Information About a Biological Collection” standard
Identification of the scientific services, stakeholders, promoters, and utilizers of the proposed RI (v2)

Data Management Plan (2)

Data management plan
Revised data management plan

Websites, patent fillings, videos etc. (2)

Project public website
Interconnection of the different phenotype databases with the central EURISCO information system

Other (1)

Workshop on the evaluation of in situ and ex situ PGR collections, organized in collaboration with the EMPHASIS RI

Veröffentlichungen

Peer reviewed articles (32)

History and current status of plant genetic resources conserved and maintained by the Hungarian central genebank

Autoren: Zoltan Ay, Attila Simon, Adrienn Gyurkó, Evelin Fekete, Balázs Horváth, Borbála Baktay
Veröffentlicht in: Genetic Resources, 2025, ISSN 2708-3764
Herausgeber: Alliance of Bioversity International and CIAT
DOI: 10.46265/GENRESJ.FCUW9498

QTL mapping for kernel-related traits in a durum wheat x T. dicoccum segregating population

Autoren: Ana Paola Valladares Garcia, Francesca Desiderio, Rosanna Simeone, Stefano Ravaglia, Roberto Ciorba, Agostino Fricano, Davide Guerra, Antonio Blanco, Luigi Cattivelli, Elisabetta Mazzucotelli
Veröffentlicht in: Frontiers in Plant Science, Ausgabe 14, 2023, ISSN 1664-462X
Herausgeber: Frontiers
DOI: 10.3389/FPLS.2023.1253385

The use of web resources for metabolomics in horticultural crops

Autoren: Esra Karakas; Mustafa Bulut; Alisdair R. Fernie
Veröffentlicht in: Horticulture Advances, Ausgabe 3, 2025, ISSN 2948-1104
Herausgeber: Springer Nature
DOI: 10.1007/S44281-025-00073-8

Resequencing and phenotyping of the first highly inbred eggplant multiparent population reveal SmLBD13 as a key gene associated with root morphology

Autoren: Andrea Arrones , Virginia Baraja-Fonseca , Andrea Solana , Mariola Plazas , Salvador Soler , Jaime Prohens , Santiago Vilanova and Pietro Gramazio
Veröffentlicht in: Horticulture Research, ISSN 2052-7276
Herausgeber: Oxford University Press (OUP)
DOI: 10.1093/HR/UHAF167

A proposal for genebank metrics to enhance collection management

Autoren: Theo van Hintum, Bela Bartha, Claudio Niggli, Alvina Avagyan, Sylvia Vogl, Lisa Achathaler, Vojtech Holubec, Ludmilla Papouskova, Francesco Ferrari, Graziano Rossi, Attila Simon, Lajos Horvath, Renata Kowalik, Maja Boczkowka, Stephan Weise, Markus Oppermann, Maarten van Zonneveld, Matija Obreza, Erik Wijnker, Noam Chayut, Fadia Chairi, Johan Axelsson, Lise Lykke Steffensen, Filippo Guzzon
Veröffentlicht in: Plant Genetic Resources: Characterization and Utilization, 2025, ISSN 1479-2621
Herausgeber: Cambridge University Press (CUP)
DOI: 10.1017/S147926212510021X

What metabolomics has taught us about tomato fruit ripening and quality

Autoren: Esra Karakas, Alisdair R Fernie
Veröffentlicht in: Journal of Experimental Botany, 2025, ISSN 0022-0957
Herausgeber: Oxford University Press (OUP)
DOI: 10.1093/JXB/ERAF209

A significantly enhanced role for plant genetic resource centres in linking in situ and ex situ conservation to aid user germplasm access

Autoren: Nigel Maxted, Anne-Françoise Adam-Blondon, Catherine Hazel Aguilar, Ana Maria Barata, Béla Bartha, Riccardo Bocci, Domenico De Paola, Heli S. Fitzgerald, Louis John Fresta, Pietro Fusani, Giovanni Giuliano, Filippo Guzzon, Philipp Holzherr, Vojtěch Holubec, José María Iriondo Alegría, Juozas Labokas, Lorenzo Maggioni, Joana Magos Brehm, Anna Palmé, Jade Phillips, Jaime Prohens, Lorenzo Raggi, Parthenopi Ralli, Dainis Rungis, Karuine Sarikyan, Jelka Šuštar-Vozlič, Imke Thormann, Goran Zdunić
Veröffentlicht in: Genetic Resources, 2025, ISSN 2708-3764
Herausgeber: Alliance of Bioversity International and CIAT
DOI: 10.46265/GENRESJ.UNVV5571

Strengthening European research cooperation on plant genetic resources conservation and use

Autoren: Sandra Goritschnig, Stephan Weise, Filippo Guzzon, Lorenzo Maggioni, Theo Van Hintum, Lise Lykke Steffensen, Nils Stein, Giovanni Giuliano
Veröffentlicht in: Genetic Resources, 2025, ISSN 2708-3764
Herausgeber: Alliance of Bioversity International and CIAT
DOI: 10.46265/GENRESJ.LUZJ7324

Graph-based pangenomes and pan-phenome provide a cornerstone for eggplant biology and breeding

Autoren: Luciana Gaccione, Laura Toppino, Marie Bolger, Maximilian Schmidt, Maria Rosaria Tassone, Maria Sulli, Emily Idahl, David Alonso, Giuseppe Aprea, Paola Ferrante, Véronique Lefebvre, Hatice Filiz Boyaci, Roland Schafleitner, Stefano Gattolin, Richard Finkers, Matthijs Brouwer, Arnaud Bovy, Jaime Prohens, Ezio Portis, Sergio Lanteri, Giuseppe Leonardo Rotino, Giovanni Giuliano, Björn Usadel, Lorenzo Barchi
Veröffentlicht in: Nature Communications, Ausgabe 16, 2025, ISSN 2041-1723
Herausgeber: Springer Science and Business Media LLC
DOI: 10.1038/S41467-025-64866-1

Quality management in a genebank environment: Principles and experiences at the Centre for Genetic Resources, The Netherlands (CGN)

Autoren: Theo Van Hintum, Erik Wijker
Veröffentlicht in: Genetic Resources, 2024, ISSN 2708-3764
Herausgeber: Alliance of Bioversity International and CIAT
DOI: 10.46265/GENRESJ.RFXB3570

Community seedbanks in Europe: their role between ex situ and on-farm conservation

Autoren: Riccardo Bocci, Béla Bartha, Helene Maierhofer, Michaela Arndorfer, Michele Salvan
Veröffentlicht in: Genetic Resources, 2025, ISSN 2708-3764
Herausgeber: Alliance of Bioversity International and CIAT
DOI: 10.46265/GENRESJ.OHNK3179

Unveiling pepper immunity’s robustness to temperature shifts: insights for empowering future crops

Autoren: William Billaud, Judith Hirsch, Valentin Ribaut, Lucie Tamisier, Anne Massire, Marion Szadkowski, Félicie Lopez-Lauri, Benoît Moury, Véronique Lefebvre
Veröffentlicht in: Horticulture Research, Ausgabe 11, 2024, ISSN 2052-7276
Herausgeber: Oxford University Press (OUP)
DOI: 10.1093/HR/UHAE239

Analysis of >3,400 worldwide eggplant accessions reveals two independent domestication events and multiple migration-diversification routes

Autoren: Barchi L, Aprea G, Rabanus-Wallace MT, Toppino L, Alonso D, Portis E, Lanteri S, Gaccione L, Omondi E, van Zonneveld M, Schafleitner R, Ferrante P, Börner A, Stein N, Díez MJ, Lefebvre V, Salinier J, Boyaci HF, Finkers R, Brouwer M, Bovy AG, Rotino GL, Pr
Veröffentlicht in: The Plant Journal, 2023, ISSN 0960-7412
Herausgeber: Wiley
DOI: 10.1111/TPJ.16455

A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology

Autoren: Ranawaka B, An J, Lorenc MT, Jung H, Sulli M, Aprea G, Roden S, Llaca V, Hayashi S, Asadyar L, LeBlanc Z, Ahmed Z, Naim F, de Campos SB, Cooper T, de Felippes FF, Dong P, Zhong S, Garcia-Carpintero V, Orzaez D, Dudley KJ, Bombarely A, Bally J, Winefield C
Veröffentlicht in: Nature Plants, 2023, ISSN 2055-0278
Herausgeber: Springer Nature
DOI: 10.1038/s41477-023-01489-8

Multi-environment association study highlights candidate genes for robust agronomic quantitative trait loci in a novel worldwide Capsicum core collection

Autoren: McLeod L, Barchi L, Tumino G, Tripodi P, Salinier J, Gros C, Boyaci HF, Ozalp R, Borovsky Y, Schafleitner R, Barchenger D, Finkers R, Brouwer M, Stein N, Rabanus-Wallace MT, Giuliano G, Voorrips R, Paran I, Lefebvre V
Veröffentlicht in: The Plant Journal, Ausgabe 116, 2023, ISSN 0960-7412
Herausgeber: Wiley
DOI: 10.1111/TPJ.16425

Metabolome guided treasure hunt - learning from metabolic diversity

Autoren: Esra Karakas, Mustafa Bulut, Alisdair Fernie
Veröffentlicht in: Journal of Plant Physiology, Ausgabe 309, 2025, ISSN 0176-1617
Herausgeber: Elsevier BV
DOI: 10.1016/J.JPLPH.2025.154494

Organization of plant Biological Resource Centers for research in France: History, evolution and current status

Autoren: Valerie Bergheaud, Jean-Marc Audergon, Arnaud Bellec, Anne Delaunay, Jérôme Duminil, Stéphane Dussert, Florence Esnault, Emmanuel Geoffriau, Brigitte Gouesnard, Christophe Jenny, Alain Label, Phili
Veröffentlicht in: Genetic Resources, 2025, ISSN 2708-3764
Herausgeber: Alliance of Bioversity International and CIAT
DOI: 10.46265/GENRESJ.ASZO2413

Induction of water stress in major Solanum crops: A review on methodologies and their application for identifying drought tolerant materials

Autoren: Flores-Saavedra, Martín; Plazas, Mariola; Vilanova, Santiago; Prohens, Jaime; Gramazio, Pietro
Veröffentlicht in: Scientia Horticulturae, 2023, ISSN 0304-4238
Herausgeber: Elsevier
DOI: 10.1016/J.SCIENTA.2023.112105

Preservation of fruit-bearing plants under gene bank conditions

Autoren: Gyurko, Adrienn; Szucs-Nagy, Vivien; Simon, Attila; Oszi, Balint; Baktay, Borbala
Veröffentlicht in: Gradus, Ausgabe 10, 2023, ISSN 2064-8014
Herausgeber: John von Neumann University, Kecskemet, Hungary
DOI: 10.47833/2023.1.AGR.008

Benchmarking of low coverage sequencing workflows for precision genotyping in eggplant

Autoren: Virginia Baraja-Fonseca, Andrea Arrones, Santiago Vilanova, Mariola Plazas, Jaime Prohens, Aureliano Bombarely, Pietro Gramazio
Veröffentlicht in: BMC Plant Biology, Ausgabe 25, 2025, ISSN 1471-2229
Herausgeber: Springer Science and Business Media LLC
DOI: 10.1186/S12870-025-07242-X

A gap and synergy analysis of the European research infrastructure (RI) ecosystem: advancing the novel GRACE-RI dedicated to plant genetic resources

Autoren: Domenico De Paola, Francesca Taranto, Soraya Mousavi, Francesco Mercati, Wilma Sabetta, Marina Tumolo, Sharif Islam, Roland Pieruschka, Andrea Scaloni, Anne-Francoise Adam-Blondon, Lorenzo Maggioni, Sandra Goritschnig, Filippo Guzzon, Massimo Ianigro, Giovanni Giuseppe Vendramin, Giovanni Giuliano, Gabriele Bucci
Veröffentlicht in: Annals of Botany, Ausgabe 136, 2025, ISSN 0305-7364
Herausgeber: Oxford University Press (OUP)
DOI: 10.1093/AOB/MCAF092

Discrimination of 14 olive cultivars using morphological analysis and machine learning algorithms

Autoren: Konstantinos N. Blazakis, Danil Stupichev, Maria Kosma, Mohamad Ali Hassan El Chami, Anastasia Apodiakou, George Kostelenos, Panagiotis Kalaitzis
Veröffentlicht in: Frontiers in Plant Science, Ausgabe 15, 2024, ISSN 1664-462X
Herausgeber: Frontiers Media SA
DOI: 10.3389/FPLS.2024.1441737

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

Autoren: Salojärvi J, Rambani A, Yu Z, Guyot R, Strickler S, Lepelley M, Wang C, Rajaraman S, Rastas P, Zheng C, Muñoz DS, Meidanis J, Paschoal AR, Bawin Y, Krabbenhoft TJ, Wang ZQ, Fleck SJ, Aussel R, Bellanger L, Charpagne A, Fournier C, Kassam M, Lefebvre G, Mé
Veröffentlicht in: Nature genetics, 2024, ISSN 1546-1718
Herausgeber: Nature
DOI: 10.1038/S41588-024-01695-W

Genealogical tracing of Olea europaea species and pedigree relationships of var. europaea using chloroplast and nuclear markers

Autoren: Mariotti, Roberto; Belaj, Angjelina; De la Rosa, Raul; Muleo, Rosario; Cirilli, Marco; Forgione, Ivano; Valeri, Maria Cristina; Mousavi, Soraya
Veröffentlicht in: BMC Plant Biology, Ausgabe 23, 2023, ISSN 1471-2229
Herausgeber: BMC
DOI: 10.1186/s12870-023-04440-3

Solanum pennellii (LA5240) backcross inbred lines (BILs) for high resolution mapping in tomato

Autoren: Torgeman, S., Pleban T., Goldberg Y., Ferrante Paola, Aprea Giuseppe, Giuliano Giovanni, Yichie Y., Fisher J., Zemach I., Koch A., Rochsar E., Oved M., Bandel K., and Zamir D
Veröffentlicht in: The plant Journal, 2024, ISSN 1365-313X
Herausgeber: wiley
DOI: 10.1111/TPJ.16755

Editorial: Ex situ conservation of plant genetic resources in Europe – A journey through history, mission, challenges and future opportunities

Autoren: Filippo Guzzon, Sandra Goritschnig, Nora Capozio, Lorenzo Maggioni
Veröffentlicht in: Genetic Resources, 2025, ISSN 2708-3764
Herausgeber: Alliance of Bioversity International and CIAT
DOI: 10.46265/GENRESJ.BLDS6319

Complex evaluation of wild pear

Autoren: Gyurko, Adrienn; Baktay, Borbala; Varga, Anna; Szani, Zsolt
Veröffentlicht in: Acta Universitatis Sapientiae Agriculture and Environment, 2023, ISSN 2068-2964
Herausgeber: Sapientia Hungarian University of Transylvania, Cluj-Napoca, Romania
DOI: 10.2478/ausae-2023-0006

Association analyses reveal both anthropic and environmental selective events during eggplant domestication

Autoren: Emmanuel Omondi, Lorenzo Barchi, Luciana Gaccione, Ezio Portis, Laura Toppino, Maria Rosaria Tassone, David Alonso, Jaime Prohens, Giuseppe Leonardo Rotino, Roland Schafleitner, Maarten van Zonneveld, Giovanni Giuliano
Veröffentlicht in: The Plant Journal, Ausgabe 121, 2025, ISSN 0960-7412
Herausgeber: Wiley
DOI: 10.1111/TPJ.17229

Conventional and new genetic resources for an eggplant breeding revolution

Autoren: Gramazio, P.; Alonso, D.; Arrones, A.; Villanueva, G.; Plazas, M.; Toppino, L.; Barchi, L.; Portis, E.; Ferrante, P.; Lanteri, S.; Rotino, G.L.; Giuliano, G.; Vilanova, S.; Prohens, J.
Veröffentlicht in: Journal of Experimental Botany, 2023, ISSN 0022-0957
Herausgeber: Oxford Academic
DOI: 10.1093/jxb/erad260

A new wild emmer wheat panel allows to map new loci associated with resistance to stem rust at seedling stage

Autoren: Anna Maria Mastrangelo, Pablo Roncallo, Oadi Matny, Radim Čegan, Brian Steffenson, Viviana Echenique, Jan Šafář, Raffaella Battaglia, Delfina Barabaschi, Luigi Cattivelli, Hakan Özkan, Elisabetta Mazzucotelli
Veröffentlicht in: The Plant Genome, 2023, ISSN 1940-3372
Herausgeber: Wiley
DOI: 10.1002/TPG2.20413

Plant Sample Collection and Shipment for Multi‐omic Analyses and Phytosanitary Evaluation

Autoren: Karakas, Esra; Ferrante, Paola; Schafleitner, Roland; Giuliano, Giovanni; Fernie, Alisdair R.; Alseekh, Saleh
Veröffentlicht in: Current protocols, 2023, ISSN 2691-1299
Herausgeber: Wiley
DOI: 10.1002/CPZ1.952

A novel tomato interspecific (<i>Solanum lycopersicum</i> var. <i>cerasiforme</i> and <i>Solanum pimpinellifolium</i>) MAGIC population facilitates trait association and candidate gene discovery in untapped exotic germplasm

Autoren: Andrea Arrones, Oussama Antar, Leandro Pereira-Dias, Andrea Solana, Paola Ferrante, Giuseppe Aprea, Mariola Plazas, Jaime Prohens, María José Díez, Giovanni Giuliano, Pietro Gramazio, Santiago Vilanova
Veröffentlicht in: Horticulture Research, Ausgabe 11, 2024, ISSN 2052-7276
Herausgeber: Oxford University Press (OUP)
DOI: 10.1093/HR/UHAE154

Other (2)

The genome and population genomics of allopolyploid<i>Coffea arabica</i>reveal the diversification history of modern coffee cultivars

Autoren: Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor Krabbenhoft, Zhen Qin Wang,
Veröffentlicht in: Biorxiv, 2023, ISSN 2692-8205
Herausgeber: Cold Spring Harbor Laboratory
DOI: 10.1101/2023.09.06.556570

A guide to using landscape genomics for the conservation and use of plant diversity

Autoren: Omondi, E., Lin, Y.P. ,Zonneveld, M.
Veröffentlicht in: A guide to using landscape genomics for the conservation and use of plant diversity
Herausgeber: World Vegetable Center: World Vegetable Center
DOI: 10.22001/WVC.76147