Functional cartography of intestinal host-microbiome interactions

Project Information

CartoHostBug

Grant agreement ID: 101118531

DOI

10.3030/101118531

EC signature date 19 June 2024

Start date 1 July 2024

End date 30 June 2030

Funded under

• European Research Council (ERC)

Total cost

€ 10 382 670,00

EU contribution

€ 10 382 670,00

Coordinated by

KAROLINSKA INSTITUTET
Sweden

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Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (7)

Decoding the complexity of intestinal immunity with spatial transcriptomics

Author(s): Martín Suárez-Álvarez, María A Ulloa, Eduardo J Villablanca
Published in: Current Opinion in Immunology, Issue 101, 2026, ISSN 0952-7915
Publisher: Elsevier BV
DOI: 10.1016/J.COI.2026.102806

ProbeST: a custom probe design pipeline for dual host–pathogen Spatial Transcriptomics

Author(s): Sofia Rouot, Ireen van Dolderen, Patrick Rosendahl Andreassen, Solène Frapard, Sybil A. Herrera-Foessel, Hailey Sounart, Sami Saarenpää, Julia A. Vorholt, Stefania Giacomello
Published in: BMC Genomics, Issue 27, 2026, ISSN 1471-2164
Publisher: Springer Science and Business Media LLC
DOI: 10.1186/S12864-026-13077-Z

Uncovering Immune Niches in Health and Disease Using Spatial Transcriptomics

Author(s): Johan Thorsson, Yang Zhao, Eduardo J. Villablanca, Camilla Engblom
Published in: European Journal of Immunology, Issue 56, 2026, ISSN 0014-2980
Publisher: Wiley
DOI: 10.1002/EJI.70185

Meta-analysis reveals microbiome signatures for colorectal cancer that are universal across age groups and sequencing methods

Author(s): Selin Pekel, Nicolai Karcher, Morgan Essex, Fabian Springer, Stefano Romano, Quinten R. Ducarmon, Christian Schudoma, Martin Larralde, Alberto Lupatin, Sebastian Zeissig, Michael Zimmermann, Georg Zeller
Published in: Cell Host & Microbe, Issue 34, 2026, ISSN 1931-3128
Publisher: Elsevier BV
DOI: 10.1016/J.CHOM.2026.05.030

Promoting intestinal regeneration without tumor risk in immune-mediated inflammatory diseases

Author(s): Angélica Díaz-Basabe, Ning He, Eduardo J. Villablanca
Published in: Trends in Immunology, 2026, ISSN 1471-4906
Publisher: Elsevier BV
DOI: 10.1016/J.IT.2026.05.004

B cells in inflammatory bowel disease

Author(s): Francisca A. Castillo, Bianca C. Kern, Eduardo J. Villablanca
Published in: Immunology Letters, Issue 277, 2026, ISSN 0165-2478
Publisher: Elsevier BV
DOI: 10.1016/J.IMLET.2025.107071

Spatiotemporal analysis reveals distinct inflammatory programs underlying chronic colitis

Author(s): Jennifer Fransson, Chiara Sorini, Francisca Castillo, Yuhao Chi, Ning He, Martin Suarez-Alvarez, Maria Alejandra Ulloa, Rodrigo A. Morales Castro, Ali Okhovat, Hailey Sounart, Chiara Zagami, Rebeca F. Cardoso, Srustidhar Das, Stefania Giacomello, Anna Mechling, Charlotte R.H. Hedin, Philip Smith, Eduardo J. Villablanca
Published in: Immunity, Issue 59, 2026, ISSN 1074-7613
Publisher: Elsevier BV
DOI: 10.1016/J.IMMUNI.2026.04.005