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The role of the gut microbiome in host responses to environmental variation: within and across generations and species

Project description

How the gut microbiome of birds helps their climate adaptation

The gut microbiome plays a crucial role in maintaining health, yet much of the research is confined to laboratory animal models. To gain a comprehensive understanding of the microbiome’s function, data from wild populations and species are essential. With this in mind, the ERC-funded MiMeRe project focuses on wild birds to investigate how their gut microbiome aids in adapting to temperature variations induced by climate change. The project aims to achieve several objectives, including elucidating how the microbiome influences the host’s response to temperature fluctuations, examining underlying epigenetic modifications, and analysing the molecular mechanisms of host-microbiome interactions. Advanced techniques such as microbiome transplants, quantitative genetics, and multivariate phylogenetic models will be employed to investigate the causal role of microbiomes in these processes.

Objective

The gut microbiome is strongly linked to health and sickness. A current key challenge is to understand how the microbiome helps the host adapt to environmental variation. Yet, most research originates from few laboratory animal models and thus misses large parts of environmental, physiological and life-history variation, while data from wild populations and species is needed. Thus, our overarching aim is to unravel how the microbiome mediates hosts responses to environmental variation, covering molecular to evolutionary scale, using wild birds as a study system. We focus on how gut microbiome helps hosts to cope with temperature variation, given the pervasiveness of temperature as a challenge across taxa, and climate-crisis driven thermal challenges. The objectives:

(O1) To study the role of the microbiome in mediating host (adaptive) reversible thermal plasticity in adulthood
(O2) To assess the role of the microbiome in mediating host (adaptive) developmental and transgenerational thermal plasticity, and explore the underlying epigenetic changes
(O3) To quantify the contribution of host genetic variation and the microbiome on host thermal physiology
(O4) To explore the macroevolutionary patterns of microbiome and host thermal physiology
(O5) To examine the underlying molecular mediators of host-microbiome interactions

To understand the causal role of microbiome, we apply state-of-the-art methods (incl. microbiome transplants) within and across populations (O1) and generations (O2), and identify the molecular mediators (incl. bacterial vesicles; O5), many tools adapted from the biomedical field to eco-evo research. We further use quantitative genetics, reaction norms, selection lines (O3) and multivariate phylogenetic models (O4), rarely used in host-microbiome field, opening new lines of research. We produce ground-breaking findings on the microbiome-mediated mechanisms of phenotypic variation, which helps to predict how organisms respond to anthropog

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HORIZON-ERC - HORIZON ERC Grants

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Call for proposal

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(opens in new window) ERC-2023-COG

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Host institution

JYVASKYLAN YLIOPISTO
Net EU contribution

Net EU financial contribution. The sum of money that the participant receives, deducted by the EU contribution to its linked third party. It considers the distribution of the EU financial contribution between direct beneficiaries of the project and other types of participants, like third-party participants.

€ 1 999 943,00
Address
SEMINAARINKATU 15
40100 Jyvaskyla
Finland

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Activity type
Higher or Secondary Education Establishments
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Total cost

The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.

€ 1 999 943,00

Beneficiaries (1)

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