EBRAINS 2.0: A Research Infrastructure to Advance Neuroscience and Brain Health

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

D3.6 Co-design strategy for WP3

Report on the strategy that WP3 will follow to perform co-design activities with other partners in the project and external stakeholders.

D6.5 Co-design strategy for WP6

Report on the strategy that WP6 will follow to perform co-design activities with other partners in the project and external stakeholders.

D1.6 Co-design strategy for WP1

Report on the strategy that WP1 will follow to perform co-design activities with other partners in the project and external stakeholders.

D8.9 Plans and processes for the governance of the Project

Summary document describing plans and processes for the governance of the Project ready

D2.4 Strategy for 5M connectome data acquisition

Report on the strategy to follow during the multi-site acquisition of the 5M connectome dataset

D4.4 Co-design strategy for WP4

Report on the strategy that WP4 will follow to perform co-design activities with other partners in the project and external stakeholders.

D5.5 Co-design strategy for WP5

Report on the strategy that WP5 will follow to perform co-design activities with other partners in the project and external stakeholders.

D2.5 Co-design strategy for WP2

Develop a co-design activity in which members of the EAN will be polled about their competence and interest on new connectomics methods to study clinical conditions.

Publications

Metadata practices for simulation workflows

Author(s): José Villamar, Matthias Kelbling, Heather L. More, Michael Denker, Tom Tetzlaff, Johanna Senk, Stephan Thober
Published in: Scientific Data, Issue 12, 2025, ISSN 2052-4463
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41597-025-05126-1

Evidence for an Evolutionary Continuity in Social Dominance: Insights from Nonhuman Primate Tractography

Author(s): Julie Royo, Thomas Orset, Marco Catani, Pierre Pouget, Michel Thiebaut de Schotten
Published in: The Journal of Neuroscience, Issue 45, 2025, ISSN 0270-6474
Publisher: Society for Neuroscience
DOI: 10.1523/JNEUROSCI.1646-24.2025

Modeling nitric oxide diffusion and plasticity modulation in cerebellar learning

Author(s): Alessandra Maria Trapani, Carlo Andrea Sartori, Benedetta Gambosi, Alessandra Pedrocchi, Alberto Antonietti
Published in: APL Bioengineering, Issue 9, 2025, ISSN 2473-2877
Publisher: AIP Publishing
DOI: 10.1063/5.0250953

An extended and improved CCFv3 annotation and Nissl atlas of the entire mouse brain

Author(s): Sébastien Piluso; Csaba Verasztó; Harry Carey; Émilie Delattre; Thibaud L’Yvonnet; Éloïse Colnot; Armando Romani; Jan G. Bjaalie; Henry Markram; Daniel Keller
Published in: Imaging Neuroscience, 2025, ISSN 2837-6056
Publisher: MIT Press Direct
DOI: 10.1101/2024.11.06.622212

Neurobiology of Disease

Author(s): Lorenzo Pini; Giuseppe Lombardi; Giulio Sansone; Matteo Gaiola; Marta Padovan; Francesco Volpin; Luca Denaro; Maurizio Corbetta; Alessandro Salvalaggio
Published in: Neurobiology of Disease, 2024, ISSN 0969-9961
Publisher: Academic Press
DOI: 10.1016/J.NBD.2024.106521

Lu.i – A low-cost electronic neuron for education and outreach

Author(s): Yannik Stradmann, Julian Göltz, Mihai A. Petrovici, Johannes Schemmel, Sebastian Billaudelle
Published in: Trends in Neuroscience and Education, Issue 38, 2025, ISSN 2211-9493
Publisher: Elsevier BV
DOI: 10.1016/J.TINE.2025.100248

Frontiers in Neuroanatomy

Author(s): Ivan Velasco; Juan J. Garcia-Cantero; Juan J. Garcia-Cantero; Juan P. Brito; Juan P. Brito; Sofia Bayona; Sofia Bayona; Luis Pastor; Luis Pastor; Susana Mata; Susana Mata
Published in: Frontiers in Neuroanatomy, 2024, ISSN 1662-5129
Publisher: Frontiers Research Foundation
DOI: 10.3389/FNANA.2024.1342762

Frontiers in Computational Neuroscience

Author(s): Astrid Correa; Adam Ponzi; Adam Ponzi; Vladimir M. Calderón; Rosanna Migliore
Published in: Frontiers in Computational Neuroscience, 2024, ISSN 1662-5188
Publisher: Frontiers Research Foundation
DOI: 10.3389/FNCOM.2024.1410335

Scientific Reports

Author(s): Rocha R. P.; Zorzi M.; Corbetta M.
Published in: Scientific Reports, 2024, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/S41598-024-80196-6

Nature Communications

Author(s): Pedro Nascimento Alves; Victor Nozais; Justine Y. Hansen; Maurizio Corbetta; Parashkev Nachev; Isabel Pavão Martins; Michel Thiebaut de Schotten
Published in: Nature Communications, 2025, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.21203/RS.3.RS-3937453/V1

Mathematical Biosciences

Author(s): A. Marasco; C. Tribuzi; A. Iuorio; M. Migliore
Published in: Mathematical Biosciences, 2023, ISSN 0025-5564
Publisher: Elsevier
DOI: 10.1101/2023.04.03.535350

Navigating Conflicting Interests: The Role of Gender Competent Management for Effective Gender Equality Plans

Author(s): Angela Wroblewski, Karin Grasenick
Published in: Social Inclusion, Issue 13, 2025, ISSN 2183-2803
Publisher: Cogitatio
DOI: 10.17645/SI.9992

Multimodal gradients unify local and global cortical organization

Author(s): Yezhou Wang, Nicole Eichert, Casey Paquola, Raul Rodriguez-Cruces, Jordan DeKraker, Jessica Royer, Donna Gift Cabalo, Hans Auer, Alexander Ngo, Ilana R. Leppert, Christine L. Tardif, David A. Rudko, Robert Leech, Katrin Amunts, Sofie L. Valk, Jonathan Smallwood, Alan C. Evans, Boris C. Bernhardt
Published in: Nature Communications, Issue 16, 2025, ISSN 2041-1723
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41467-025-59177-4

Modeling impairment of ionic regulation with extended Adaptive Exponential integrate-and-fire models

Author(s): Damien Depannemaecker, Federico Tesler, Mathieu Desroches, Viktor Jirsa, Alain Destexhe
Published in: Journal of Computational Neuroscience, Issue 53, 2025, ISSN 0929-5313
Publisher: Springer Science and Business Media LLC
DOI: 10.1007/S10827-025-00893-7

New organizational principles and 3D cytoarchitectonic maps of the dorsolateral prefrontal cortex in the human brain

Author(s): Ariane Bruno, Kimberley Lothmann, Sebastian Bludau, Hartmut Mohlberg, Katrin Amunts
Published in: Frontiers in Neuroimaging, Issue 3, 2024, ISSN 2813-1193
Publisher: Frontiers Media SA
DOI: 10.3389/FNIMG.2024.1339244

Synchronization in spiking neural networks with short and long connections and time delays

Author(s): Lionel Kusch, Martin Breyton, Damien Depannemaecker, Spase Petkoski, Viktor K. Jirsa
Published in: Chaos: An Interdisciplinary Journal of Nonlinear Science, Issue 35, 2025, ISSN 1054-1500
Publisher: AIP Publishing
DOI: 10.1063/5.0158186

Principles and Operation of Virtual Brain Twins

Author(s): Meysam Hashemi, Damien Depannemaecker, Marisa Saggio, Paul Triebkorn, Giovanni Rabuffo, Jan Fousek, Abolfazl Ziaeemehr, Viktor Sip, Anastasios Athanasiadis, Martin Breyton, Marmaduke Woodman, Huifang Wang, Spase Petkoski, Pierpaolo Sorrentino, Viktor Jirsa
Published in: IEEE Reviews in Biomedical Engineering, 2025, ISSN 1937-3333
Publisher: Institute of Electrical and Electronics Engineers (IEEE)
DOI: 10.1109/RBME.2025.3562951

Linking cellular-level phenomena to brain architecture: the case of spiking cerebellar controllers

Author(s): Egidio D’Angelo, Alberto Antonietti, Alice Geminiani, Benedetta Gambosi, Cristiano Alessandro, Emiliano Buttarazzi, Alessandra Pedrocchi, Claudia Casellato
Published in: Neural Networks, Issue 188, 2025, ISSN 0893-6080
Publisher: Elsevier BV
DOI: 10.1016/J.NEUNET.2025.107538

The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases

Author(s): Camilla H. Blixhavn, Ingrid Reiten, Heidi Kleven, Martin Øvsthus, Sharon C. Yates, Ulrike Schlegel, Maja A. Puchades, Oliver Schmid, Jan G. Bjaalie, Ingvild E. Bjerke, Trygve B. Leergaard
Published in: Frontiers in Neuroinformatics, Issue 18, 2024, ISSN 1662-5196
Publisher: Frontiers Media SA
DOI: 10.3389/FNINF.2024.1284107

Scientific Reports

Author(s): Rocha R. P.; Zorzi M.; Corbetta M.
Published in: Scientific Reports, 2024, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/S41598-024-80196-6

Identifying sources of bias when testing three available algorithms for quantifying white matter lesions: BIANCA, LPA and LGA

Author(s): Tatiana Miller, Nora Bittner, Susanne Moebus, Svenja Caspers
Published in: GeroScience, Issue 47, 2024, ISSN 2509-2723
Publisher: Springer Science and Business Media LLC
DOI: 10.1007/S11357-024-01306-W

Digital tools of analysis and data integration facilitate synergy between mouse and human brain research and enable translation

Author(s): Sabine M. Hölter, Lillian Garrett, Sebastian Bludau, Katrin Amunts
Published in: Mammalian Genome, Issue 35, 2024, ISSN 0938-8990
Publisher: Springer Science and Business Media LLC
DOI: 10.1007/S00335-024-10072-1

Nature Communications

The developing mouse dopaminergic system: Cortical-subcortical shift in D1/D2 receptor balance and increasing regional differentiation

Author(s): Ingvild E. Bjerke, Harry Carey, Jan G. Bjaalie, Trygve B. Leergaard, Jee Hyun Kim
Published in: Neurochemistry International, Issue 182, 2025, ISSN 0197-0186
Publisher: Elsevier BV
DOI: 10.1016/J.NEUINT.2024.105899

Considerations and recommendations from the <scp>ISMRM</scp> diffusion study group for preclinical diffusion <scp>MRI</scp>: Part 1: In vivo small‐animal imaging

Author(s): Ileana O. Jelescu, Francesco Grussu, Andrada Ianus, Brian Hansen, Rachel L. C. Barrett, Manisha Aggarwal, Stijn Michielse, Fatima Nasrallah, Warda Syeda, Nian Wang, Jelle Veraart, Alard Roebroeck, Andrew F. Bagdasarian, Cornelius Eichner, Farshid Sepehrband, Jan Zimmermann, Lucas Soustelle, Christien Bowman, Benjamin C. Tendler, Andreea Hertanu, Ben Jeurissen, Marleen Verhoye, Lucio Frydman, Yohan van de Looij, David Hike, Jeff F. Dunn, Karla Miller, Bennett A. Landman, Noam Shemesh, Adam Anderson, Emilie McKinnon, Shawna Farquharson, Flavio Dell'Acqua, Carlo Pierpaoli, Ivana Drobnjak, Alexander Leemans, Kevin D. Harkins, Maxime Descoteaux, Duan Xu, Hao Huang, Mathieu D. Santin, Samuel C. Grant, Andre Obenaus, Gene S. Kim, Dan Wu, Denis Le Bihan, Stephen J. Blackband, Luisa Ciobanu, Els Fieremans, Ruiliang Bai, Trygve B. Leergaard, Jiangyang Zhang, Tim B. Dyrby, G. Allan Johnson, Julien Cohen‐Adad, Matthew D. Budde, Kurt G. Schilling
Published in: Magnetic Resonance in Medicine, Issue 93, 2025, ISSN 0740-3194
Publisher: Wiley
DOI: 10.1002/MRM.30429

The coming decade of digital brain research: A vision for neuroscience at the intersection of technology and computing

Author(s): Katrin Amunts, Markus Axer, Swati Banerjee, Lise Bitsch, Jan G. Bjaalie, Philipp Brauner, Andrea Brovelli, Navona Calarco, Marcel Carrere, Svenja Caspers, Christine J. Charvet, Sven Cichon, Roshan Cools, Irene Costantini, Egidio Ugo D’Angelo, Giulia De Bonis, Gustavo Deco, Javier DeFelipe, Alain Destexhe, Timo Dickscheid, Markus Diesmann, Emrah Düzel, Simon B. Eickhoff, Gaute Einevoll, Damian Eke, Andreas K. Engel, Alan C. Evans, Kathinka Evers, Nataliia Fedorchenko, Stephanie J. Forkel, Jan Fousek, Angela D. Friederici, Karl Friston, Stephen Furber, Liesbet Geris, Rainer Goebel, Onur Güntürkün, Aini Ismafairus Abd Hamid, Christina Herold, Claus C. Hilgetag, Sabine M. Hölter, Yannis Ioannidis, Viktor Jirsa, Sriranga Kashyap, Burkhard S. Kasper, Alban de Kerchove d’Exaerde, Roxana Kooijmans, István Koren, Jeanette Hellgren Kotaleski, Gregory Kiar, Wouter Klijn, Lars Klüver, Alois C. Knoll, Zeljka Krsnik, Julia Kämpfer, Matthew E Larkum, Marja-Leena Linne, Thomas Lippert, Jafri Malin Abdullah, Paola Di Maio, Neville Magielse, Pierre Maquet, Anna Letizia Allegra Mascaro, Daniele Marinazzo, Jorge Mejias, Andreas Meyer-Lindenberg, Michele Migliore, Judith Michael, Yannick Morel, Fabrice O. Morin, Lars Muckli, Guy Nagels, Lena Oden, Nicola Palomero-Gallagher, Fanis Panagiotaropoulos, Pier Stanislao Paolucci, Cyriel Pennartz, Liesbet M. Peeters, Spase Petkoski, Nicolai Petkov, Lucy S. Petro, Mihai A. Petrovici, Giovanni Pezzulo, Pieter Roelfsema, Laurence Ris, Petra Ritter, Kathleen Rockland, Stefan Rotter, Andreas Rowald, Sabine Ruland, Philippe Ryvlin, Arleen Salles, Maria V. Sanchez-Vives, Johannes Schemmel, Walter Senn, Alexandra A. de Sousa, Felix Ströckens, Bertrand Thirion, Kâmil Uludağ, Simo Vanni, Sacha Jennifer van Albada, Wim Vanduffel, Julien Vezoli, Lisa Vincenz-Donnelly, Florian Walter, Laszlo Zaborszky
Published in: Imaging Neuroscience, Issue 2, 2024, ISSN 2837-6056
Publisher: MIT Press
DOI: 10.1162/IMAG_A_00137

Nature Communications

Author(s): Pacella, Valentina; Nozais, Victor; Talozzi, Lia; Abdallah, Majd; Wassermann, Demian; Forkel, Stephanie; Thiebaut de Schotten, Michel
Published in: Nature Communications, 2024, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/S41467-024-52186-9

Bifurcations and bursting in the Epileptor

Author(s): Maria Luisa Saggio, Viktor Jirsa
Published in: PLOS Computational Biology, Issue 20, 2024, ISSN 1553-7358
Publisher: Public Library of Science (PLoS)
DOI: 10.1371/JOURNAL.PCBI.1011903

Time to bury the chisel: a continuous dorsal association tract system

Author(s): Hoven, Emiel van den; Reisert, Marco; Musso, Mariacristina; Glauche, Volkmar; Rijntjes, Michel; Weiller, Cornelius
Published in: Brain Structure and Function, 2024, ISSN 1863-2661
Publisher: Springer
DOI: 10.1007/S00429-024-02829-W

Frontiers in Computational Neuroscience

Modeling realistic synaptic inputs of CA1 hippocampal pyramidal neurons and interneurons via Adaptive Generalized Leaky Integrate-and-Fire models

Author(s): A. Marasco, C. Tribuzi, C.A. Lupascu, M. Migliore
Published in: Mathematical Biosciences, Issue 372, 2024, ISSN 0025-5564
Publisher: Elsevier BV
DOI: 10.1016/J.MBS.2024.109192

Semaphorin-3A regulates liver sinusoidal endothelial cell porosity and promotes hepatic steatosis

Author(s): Daniel Eberhard, Sydney Balkenhol, Andrea Köster, Paula Follert, Eric Upschulte, Philipp Ostermann, Philip Kirschner, Celina Uhlemeyer, Iannis Charnay, Christina Preuss, Sandra Trenkamp, Bengt-Frederik Belgardt, Timo Dickscheid, Irene Esposito, Michael Roden, Eckhard Lammert
Published in: Nature Cardiovascular Research, Issue 3, 2024, ISSN 2731-0590
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S44161-024-00487-Z

Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space

Author(s): H. Kleven, U. Schlegel, H. J. Groenewegen, T. B. Leergaard, I. E. Bjerke
Published in: Scientific Data, Issue 11, 2024, ISSN 2052-4463
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41597-024-03863-3

Inference on the Macroscopic Dynamics of Spiking Neurons

Author(s): Nina Baldy, Martin Breyton, Marmaduke M. Woodman, Viktor K. Jirsa, Meysam Hashemi
Published in: Neural Computation, 2024, ISSN 0899-7667
Publisher: MIT Press
DOI: 10.1162/NECO_A_01701

Nature Communications

Interdisciplinary and Collaborative Training in Neuroscience: Insights from the Human Brain Project Education Programme

Author(s): Alice Geminiani, Judith Kathrein, Alper Yegenoglu, Franziska Vogel, Marcelo Armendariz, Ziv Ben-Zion, Petrut Antoniu Bogdan, Joana Covelo, Marissa Diaz Pier, Karin Grasenick, Vitali Karasenko, Wouter Klijn, Tina Kokan, Carmen Alina Lupascu, Anna Lührs, Tara Mahfoud, Taylan Özden, Jens Egholm Pedersen, Luca Peres, Ingrid Reiten, Nikola Simidjievski, Inga Ulnicane, Michiel van der Vlag, Lyuba Zehl, Alois Saria, Sandra Diaz-Pier, Johannes Passecker
Published in: Neuroinformatics, Issue 22, 2024, ISSN 1559-0089
Publisher: Springer Science and Business Media LLC
DOI: 10.1007/S12021-024-09682-6

White matter changes after Gamma Knife Capsulotomy in patients with intractable obsessive-compulsive disorder

Author(s): Giorgio Spatola, Paul Triebkorn, Raphaelle Richieri, Christelle Baunez, Jean Farisse, Axelle Cretol, Eric Guedj, Viktor Jirsa, Jean Regis
Published in: Heliyon, Issue 10, 2024, ISSN 2405-8440
Publisher: Elsevier BV
DOI: 10.1016/J.HELIYON.2024.E34699

Cerebellar control over inter-regional excitatory/inhibitory dynamics discriminates execution from observation of an action

Author(s): Roberta Maria Lorenzi; Gökçe Korkmaz; Adnan A.S. Alahmadi; Anita Monteverdi; Letizia Casiraghi; Egidio D’Angelo; Fulvia Palesi; Claudia A.M. Gandini Wheeler-Kingshott
Published in: The Cerebellum, 2025, ISSN 1473-4230
Publisher: Springer Nature
DOI: 10.1101/2024.05.21.595114

Self-supervised representation learning for nerve fiber distribution patterns in 3D-PLI

Author(s): Alexander Oberstrass, Sascha E.A. Muenzing, Meiqi Niu, Nicola Palomero-Gallagher, Christian Schiffer, Markus Axer, Katrin Amunts, Timo Dickscheid
Published in: Imaging Neuroscience, Issue 2, 2024, ISSN 2837-6056
Publisher: MIT Press
DOI: 10.1162/IMAG_A_00351

A Model with Dopamine Depletion in Basal Ganglia and Cerebellum Predicts Changes in Thalamocortical Beta Oscillations

Author(s): Benedetta Gambosi, Francesco Jamal Sheiban, Marco Biasizzo, Alberto Antonietti, Egidio D’angelo, Alberto Mazzoni, Alessandra Pedrocchi
Published in: International Journal of Neural Systems, Issue 34, 2024, ISSN 0129-0657
Publisher: World Scientific Pub Co Pte Ltd
DOI: 10.1142/S012906572450045X

Simulation-based inference on virtual brain models of disorders

Author(s): Meysam Hashemi, Abolfazl Ziaeemehr, Marmaduke M Woodman, Jan Fousek, Spase Petkoski, Viktor K Jirsa
Published in: Machine Learning: Science and Technology, Issue 5, 2024, ISSN 2632-2153
Publisher: IOP Publishing
DOI: 10.1088/2632-2153/AD6230

Scalable network emulation on analog neuromorphic hardware

Author(s): Elias Arnold, Philipp Spilger, Jan V. Straub, Eric Müller, Dominik Dold, Gabriele Meoni, Johannes Schemmel
Published in: Frontiers in Neuroscience, Issue 18, 2025, ISSN 1662-453X
Publisher: Frontiers Media SA
DOI: 10.3389/FNINS.2024.1523331

Mesoscale simulations predict the role of synergistic cerebellar plasticity during classical eyeblink conditioning

Author(s): Alice Geminiani, Claudia Casellato, Henk-Jan Boele, Alessandra Pedrocchi, Chris I. De Zeeuw, Egidio D’Angelo
Published in: PLOS Computational Biology, Issue 20, 2024, ISSN 1553-7358
Publisher: Public Library of Science (PLoS)
DOI: 10.1371/JOURNAL.PCBI.1011277

Cytoarchitectonic Analysis and 3D Maps of the Mesial Piriform Region in the Human Brain

Author(s): Olga Kedo, Sebastian Bludau, Christian Schiffer, Hartmut Mohlberg, Timo Dickscheid, Katrin Amunts
Published in: Anatomia, Issue 3, 2024, ISSN 2813-0545
Publisher: MDPI AG
DOI: 10.3390/ANATOMIA3020007

Spatially integrated cortico-subcortical tracing data for analyses of rodent brain topographical organization

Author(s): Martin Øvsthus, Maaike M. H. van Swieten, Maja A. Puchades, Chiara Tocco, Michèle Studer, Jan G. Bjaalie, Trygve B. Leergaard
Published in: Scientific Data, Issue 11, 2024, ISSN 2052-4463
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41597-024-04060-Y

Association between night shift work and markers of metabolism, cardiovascular and immune system in a population-based German cohort

Author(s): Nora Bittner, Horst-Werner Korf, Susanne Moebus, Börge Schmidt, Svenja Caspers
Published in: GeroScience, Issue 47, 2025, ISSN 2509-2723
Publisher: Springer Science and Business Media LLC
DOI: 10.1007/S11357-025-01596-8

The impact of Parkinson’s disease on striatal network connectivity and cortico-striatal drive: an in-silico study

Author(s): Ilaria Carannante; Martina Scolamiero; J. J. Johannes Hjorth; Alexander Kozlov; Bo Bekkouche; Lihao Guo; Arvind Kumar; Wojciech Chachólski; Jeanette Hellgren Kotaleski
Published in: Network Neuroscience, 2024, ISSN 2472-1751
Publisher: MIT Press
DOI: 10.1162/NETN_A_00394

Reconciliation of weak pairwise spike–train correlations and highly coherent local field potentials across space

Author(s): Johanna Senk, Espen Hagen, Sacha J van Albada, Markus Diesmann
Published in: Cerebral Cortex, Issue 34, 2024, ISSN 1047-3211
Publisher: Oxford University Press (OUP)
DOI: 10.1093/CERCOR/BHAE405

Prediction of Verbal Abilities From Brain Connectivity Data Across the Lifespan Using a Machine Learning Approach

Author(s): Deborah Früh, Camilla Mendl‐Heinisch, Nora Bittner, Susanne Weis, Svenja Caspers
Published in: Human Brain Mapping, Issue 46, 2025, ISSN 1065-9471
Publisher: Wiley
DOI: 10.1002/HBM.70191

Region-specific mean field models enhance simulations of local and global brain dynamics

Author(s): Roberta Maria Lorenzi, Fulvia Palesi, Claudia Casellato, Claudia A. M. Gandini Wheeler-Kingshott, Egidio D’Angelo
Published in: npj Systems Biology and Applications, Issue 11, 2025, ISSN 2056-7189
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41540-025-00543-9

Mathematical generation of data-driven hippocampal CA1 pyramidal neurons and interneurons copies via A-GLIF models for large-scale networks covering the experimental variability range

Author(s): A. Marasco, C. Tribuzi, A. Iuorio, M. Migliore
Published in: Mathematical Biosciences, Issue 371, 2024, ISSN 0025-5564
Publisher: Elsevier BV
DOI: 10.1016/J.MBS.2024.109179

Kinetics and functional consequences of BK channels activation by N-type Ca2+ channels in the dendrite of mouse neocortical layer-5 pyramidal neurons

Author(s): Laila Ananda Blömer, Elisabetta Giacalone, Fatima Abbas, Luiza Filipis, Domenico Tegolo, Michele Migliore, Marco Canepari
Published in: Frontiers in Cellular Neuroscience, Issue 18, 2024, ISSN 1662-5102
Publisher: Frontiers Media SA
DOI: 10.3389/FNCEL.2024.1353895

MRI R2* captures inflammation in disconnected brain structures after stroke: a translational study

Author(s): Ismail Koubiyr, Takayuki Yamamoto, Laurent Petit, Nadège Dubourdieu, Elena Avignone, Elise Cozensa, Chloé Galmiche, Hikaru Fukutomi, Igor Sibon, Vincent Dousset, Michel Thiebaut de Schotten, Aude Panatier, Marion Tible, Thomas Tourdias
Published in: Brain, 2025, ISSN 0006-8950
Publisher: Oxford University Press (OUP)
DOI: 10.1101/2024.11.18.624105

Principles and Operation of Virtual Brain Twins

Bilingualism and “brain reserve” in subregions of the hippocampal formation

Author(s): Katharina Peitz, Nora Bittner, Stefan Heim, Svenja Caspers
Published in: GeroScience, Issue 47, 2025, ISSN 2509-2723
Publisher: Springer Science and Business Media LLC
DOI: 10.1007/S11357-025-01639-0

The predictive nature of spontaneous brain activity across scales and species

Author(s): Anastasia Dimakou, Giovanni Pezzulo, Andrea Zangrossi, Maurizio Corbetta
Published in: Neuron, Issue 113, 2025, ISSN 0896-6273
Publisher: Elsevier BV
DOI: 10.1016/J.NEURON.2025.02.009

Multi-scale spiking network model of human cerebral cortex

Author(s): Jari Pronold, Alexander van Meegen, Renan O Shimoura, Hannah Vollenbröker, Mario Senden, Claus C Hilgetag, Rembrandt Bakker, Sacha J van Albada
Published in: Cerebral Cortex, Issue 34, 2024, ISSN 1047-3211
Publisher: Oxford University Press (OUP)
DOI: 10.1093/CERCOR/BHAE409

Dynamic causal modelling in probabilistic programming languages

Author(s): Nina Baldy, Marmaduke Woodman, Viktor K. Jirsa, Meysam Hashemi
Published in: Journal of The Royal Society Interface, Issue 22, 2025, ISSN 1742-5662
Publisher: The Royal Society
DOI: 10.1098/RSIF.2024.0880

Neurobiology of Disease

Effects of the spatial resolution of the Virtual Epileptic Patient on the identification of epileptogenic networks

Author(s): Jean-Didier Lemaréchal, Paul Triebkorn, Anirudh Nihalani Vattikonda, Meysam Hashemi, Marmaduke Woodman, Maxime Guye, Fabrice Bartolomei, Huifang E. Wang, Viktor Jirsa
Published in: Imaging Neuroscience, Issue 2, 2024, ISSN 2837-6056
Publisher: MIT Press
DOI: 10.1162/IMAG_A_00153

Scientific Reports

Author(s): auf der Heiden, Franca; Axer, Markus; Amunts, Katrin; Menzel, Miriam
Published in: Scientific Reports, 2025, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.48550/ARXIV.2412.08499

The virtual multiple sclerosis patient

Author(s): P. Sorrentino, A. Pathak, A. Ziaeemehr, E. Troisi Lopez, L. Cipriano, A. Romano, M. Sparaco, M. Quarantelli, A. Banerjee, G. Sorrentino, V. Jirsa, M. Hashemi
Published in: iScience, Issue 27, 2024, ISSN 2589-0042
Publisher: Elsevier BV
DOI: 10.1016/J.ISCI.2024.110101

A map of mitochondrial biology reveals the energy landscape of the human brain

Published in: Nature, 2025, ISSN 0028-0836
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/D41586-025-00872-Z

A layered microcircuit model of somatosensory cortex with three interneuron types and cell-type-specific short-term plasticity

Author(s): Han-Jia Jiang, Guanxiao Qi, Renato Duarte, Dirk Feldmeyer, Sacha J van Albada
Published in: Cerebral Cortex, Issue 34, 2024, ISSN 1047-3211
Publisher: Oxford University Press (OUP)
DOI: 10.1093/CERCOR/BHAE378

Frontiers in Neuroanatomy

Parameter estimation in a whole-brain network model of epilepsy: Comparison of parallel global optimization solvers

Author(s): David R. Penas, Meysam Hashemi, Viktor K. Jirsa, Julio R. Banga
Published in: PLOS Computational Biology, Issue 20, 2024, ISSN 1553-7358
Publisher: Public Library of Science (PLoS)
DOI: 10.1371/JOURNAL.PCBI.1011642

Symmetry breaking organizes the brain’s resting state manifold

Author(s): Jan Fousek, Giovanni Rabuffo, Kashyap Gudibanda, Hiba Sheheitli, Spase Petkoski, Viktor Jirsa
Published in: Scientific Reports, Issue 14, 2024, ISSN 2045-2322
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41598-024-83542-W

eLife

Author(s): Zahra Khodadadi; Daniel Trpevski; Robert Lindroos; Jeanette Hellgren Kotaleski
Published in: eLife, 2024, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/ELIFE.97274.1

Closing the loop: High-speed robotics with accelerated neuromorphic hardware

Author(s): Yannik Stradmann, Johannes Schemmel
Published in: Frontiers in Neuroscience, Issue 18, 2024, ISSN 1662-453X
Publisher: Frontiers Media SA
DOI: 10.3389/FNINS.2024.1360122

Simulating the impact of white matter connectivity on processing time scales using brain network models

Author(s): Paul Triebkorn, Viktor Jirsa, Peter Ford Dominey
Published in: Communications Biology, Issue 8, 2025, ISSN 2399-3642
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S42003-025-07587-X

The Domains of Monotonicity Processing

Author(s): I-An Tan, Nir Segal, Yosef Grodzinsky
Published in: Journal of Semantics, Issue 41, 2024, ISSN 0167-5133
Publisher: Oxford University Press (OUP)
DOI: 10.1093/JOS/FFAE003

On the validity of electric brain signal predictions based on population firing rates

Author(s): Torbjørn V. Ness, Tom Tetzlaff, Gaute T. Einevoll, David Dahmen
Published in: PLOS Computational Biology, Issue 21, 2025, ISSN 1553-7358
Publisher: Public Library of Science (PLoS)
DOI: 10.1371/JOURNAL.PCBI.1012303

Virtual brain twins: from basic neuroscience to clinical use

Author(s): Huifang E Wang, Paul Triebkorn, Martin Breyton, Borana Dollomaja, Jean-Didier Lemarechal, Spase Petkoski, Pierpaolo Sorrentino, Damien Depannemaecker, Meysam Hashemi, Viktor K Jirsa
Published in: National Science Review, Issue 11, 2024, ISSN 2095-5138
Publisher: Oxford University Press (OUP)
DOI: 10.1093/NSR/NWAE079

Improving data sharing and knowledge transfer via the Neuroelectrophysiology Analysis Ontology (NEAO)

Author(s): Cristiano A. Köhler; Sonja Grün; Michael Denker
Published in: Scientific Data, 2025, ISSN 2052-4463
Publisher: Cornell University
DOI: 10.48550/ARXIV.2412.05021

Assessing the Similarity of Real Matrices with Arbitrary Shape

Author(s): Jasper Albers, Anno C. Kurth, Robin Gutzen, Aitor Morales-Gregorio, Michael Denker, Sonja Grün, Sacha J. van Albada, Markus Diesmann
Published in: PRX Life, Issue 3, 2025, ISSN 2835-8279
Publisher: American Physical Society (APS)
DOI: 10.1103/PRXLIFE.3.023005

The Virtual Parkinsonian patient

Author(s): Marianna Angiolelli, Damien Depannemaecker, Hasnae Agouram, Jean Régis, Romain Carron, Marmaduke Woodman, Letizia Chiodo, Paul Triebkorn, Abolfazl Ziaeemehr, Meysam Hashemi, Alexandre Eusebio, Viktor Jirsa, Pierpaolo Sorrentino
Published in: npj Systems Biology and Applications, Issue 11, 2025, ISSN 2056-7189
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41540-025-00516-Y

Generative Modelling of Cortical Receptor Distributions from Cytoarchitectonic Images in the Macaque Brain

Author(s): Ahmed Nebli, Christian Schiffer, Meiqi Niu, Nicola Palomero-Gallagher, Katrin Amunts, Timo Dickscheid
Published in: Neuroinformatics, Issue 22, 2024, ISSN 1559-0089
Publisher: Springer Science and Business Media LLC
DOI: 10.1007/S12021-024-09673-7

Mapping brain lesions to conduction delays: the next step for personalized brain models in Multiple Sclerosis

Author(s): C. Mazzara; A. Ziaeemehr; E. Lopez Troisi; L. Cipriano; M. Angiolelli; M. Sparaco; M. Quarantelli; C. Granata; G. Sorrentino; M. Hashemi; V. Jirsa; P. Sorrentino
Published in: Human Brain Mapping, 2024, ISSN 1097-0193
Publisher: Wiley Periodicals LLC
DOI: 10.1002/HBM.70219

Scientific Reports

Demonstrating the Advantages of Analog Wafer-Scale Neuromorphic Hardware

Author(s): Hartmut Schmidt, Andreas Grübl, José Montes, Eric Müller, Sebastian Schmitt, Johannes Schemmel
Published in: 2025 Neuro Inspired Computational Elements (NICE), 2025
Publisher: IEEE
DOI: 10.1109/NICE65350.2025.11065060

jaxsnn: Event-driven Gradient Estimation for Analog Neuromorphic Hardware

Author(s): Eric Müller, Moritz Althaus, Elias Arnold, Philipp Spilger, Christian Pehle, Johannes Schemmel
Published in: 2024 Neuro Inspired Computational Elements Conference (NICE), 2024
Publisher: IEEE
DOI: 10.1109/NICE61972.2024.10548709

Short-reach Optical Communications: A Real-world Task for Neuromorphic Hardware

Author(s): Elias Arnold, Eike-Manuel Edelmann, Alexander von Bank, Eric Müller, Laurent Schmalen, Johannes Schemmel
Published in: 2025 Neuro Inspired Computational Elements (NICE), 2025
Publisher: IEEE
DOI: 10.1109/NICE65350.2025.11065780

Contrastive Learning of Cytoarchitecture using Spatial Information

Author(s): Boztoprak, Zeynep; Dickscheid, Timo; Amunts, Katrin; Schiffer, Christian
Published in: doi:10.34734/FZJ-2024-05541, 2024
DOI: 10.34734/FZJ-2024-05541

Analyzing Regional Organization of The Human Hippocampus in 3D-PLI Using Contrastive Learning and Geometric Unfolding

Author(s): Alexander Oberstrass, Jordan DeKraker, Nicola Palomero-Gallagher, Sascha E. A. Muenzing, Alan C. Evans, Markus Axer, Katrin Amunts, Timo Dickscheid
Published in: 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 2024
Publisher: IEEE
DOI: 10.1109/ISBI56570.2024.10635467

CytoNet: A Deep Neural Network for Whole-brain Characterization of Human Cytoarchitecture

Author(s): Schiffer, Christian; Boztoprak, Zeynep; Amunts, Katrin; Dickscheid, Timo
Published in: doi:10.34734/FZJ-2024-05546, 2024
DOI: 10.34734/FZJ-2024-05546

Integrating programmable plasticity in experiment descriptions for analog neuromorphic hardware

Author(s): Philipp Spilger, Eric Müller, Johannes Schemmel
Published in: 2025 Neuro Inspired Computational Elements (NICE), 2025
Publisher: IEEE
DOI: 10.1109/NICE65350.2025.11065886

3D reconstruction of BigBrain2: Progress report on semi-automated repairs of histological sections

Author(s): Lepage, Claude; Mohlberg, Hartmut; Lewis, Lindsay B.; Toussaint, Paule-J.; Wenzel, Susanne; Evans, Alan C.; Amunts, Katrin
Published in: doi:10.34734/FZJ-2024-05655, 2024
DOI: 10.34734/FZJ-2024-05655

Multi-timescale synaptic plasticity on analog neuromorphic hardware

Author(s): Amani Atoui, Jakob Kaiser, Sebastian Billaudelle, Philipp Spilger, Eric Müller, Jannik Luboeinski, Christian Tetzlaff, Johannes Schemmel
Published in: 2025 Neuro Inspired Computational Elements (NICE), 2025
Publisher: IEEE
DOI: 10.1109/NICE65350.2025.11065914

Automatic Characterization of Fiber Architecture in 3D-PLI Using Contrastive Learning

Author(s): Oberstraß, Alexander; Schiffer, Christian; Axer, Markus; Amunts, Katrin; Dickscheid, Timo
Published in: Helmholtz AI Conference 2024, HAICON24, Düsseldorf, Germany, 2024-06-12 - 2024-06-14, 2024
DOI: 10.34734/FZJ-2024-05545

MIP: Advanced Data Processing and Analytics for Science and Medicine

Author(s): Kostas Filippopolitis, Yannis Foufoulas, Minos Garofalakis, Apostolos Glenis, Yannis Ioannidis, Thanasis-Michail Karampatsis, Maria-Olympia Katsouli, Evdokia Mailli, Asimakis Papageorgiou-Mariglis, Giorgos Papanikos, George Pikramenos, Jason Sakellariou,
Published in: Advances in Database Technology - Volume 27 Proceedings 27th International Conference on Extending Database Technology ( EDBT 2024 ) Paestum, Italy, March 25 - March 28, 2024
Publisher: Open proceedings
DOI: 10.48786/EDBT.2024.74

Virtual Brain Twins in EBRAINS

Author(s): Jirsa, viktor; Meysam, Hashemi; Wang, Huifang; Woodman, Marmaduke; Triebkorn, Paul; Dollomaja, Borana; Runfola, Claudio; Depannemaecker, Damien; Breyton, Martin; Sorrentino, Pierpaolo; Klijn, Wouter; Petkoski, Spase
Published in: doi:10.34734/FZJ-2024-05114, 2024
DOI: 10.34734/FZJ-2024-05114

Lecture Notes in Computer Science

Author(s): Robin Dietrich, Philipp Spilger, Eric Müller, Johannes Schemmel, Alois C. Knoll
Published in: Lecture Notes in Computer Science, Machine Learning, Optimization, and Data Science, 2025, ISSN 0302-9743
Publisher: Springer Verlag
DOI: 10.1007/978-3-031-82487-6_15

Human brain anatomy and atlases

Author(s): Katrin Amunts, Daniel Zachlod
Published in: Encyclopedia of the Human Brain, 2025
Publisher: Elsevier
DOI: 10.1016/B978-0-12-820480-1.00187-X

Compressed representation of brain genetic transcription

Author(s): James K. Ruffle; Henry Watkins; Robert J. Gray; Harpreet Hyare; Michel Thiebaut de Schotten; Parashkev Nachev
Published in: Human Brain Mapping, 2024
DOI: 10.48550/ARXIV.2310.16113

The Virtual Parkinsonian Patient

Author(s): Marianna Angiolelli; Damien Depannemaecker; Hasnae Agouram; Jean Ŕegis; Romain Carron; Marmaduke Woodman; Letizia Chiodo; Paul Triebkorn; Abolfazl Ziaeemehr; Meysam Hashemi; Alexandre Eusebio; Viktor Jirsa; Pierpaolo Sorrentino
Published in: npj Systems Biology and Applications, 2024
DOI: 10.1038/S41540-025-00516-Y

Bachelor thesis: Runtime-dynamic reconfiguration for a time-continuous neuromorphic system

Author(s): Tim Auberer
Published in: 2024

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