Implementing wastewater and environmental surveillance for Mpox in Sub-Saharan Africa

Informations projet

ODIN-MPox

N° de convention de subvention: 101195186

DOI

10.3030/101195186

Projet clôturé

Date de signature de la CE 7 Août 2024

Date de début 1 Août 2024

Date de fin 31 Juillet 2026

Financé au titre de

• Health

Coût total

€ 1 378 272,50

Contribution de l’UE

€ 1 378 272,50

Coordonné par

LUNDS UNIVERSITET
Sweden

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Documents, reports (13)

D2.3 Stewardship plan draft

An outline of how to achieve the optimal use of the ODIN intervention

D6.2 Feedback mechanisms

Identify stakeholders, gather feedback, and refine process

D5.2 Report seq data

Report on the data analysis pipeline for Mpox sequencing data

D2.2 Key contact point

Minutes of meetings with global health EDCTP3 JU regarding all scientific actions after 12 months

D7.1 Report (D&E)

Dissemination and Exploitation plan (draft)

D1.2 SAB/PAB

Minutes of SAB/PAB meetings

D5.1 Report qPCR

Report on the data analysis pipeline for Mpox detection data from qPCR

D2.3 Scientific report

Yearly scientific progress report, 12 months

D1.3 Annual report

Annual report of the progress after 12 months

D1.1 Kick-off

Kick-off meeting report

D2.1 Monitoring reports

First monitoring reports with scientific coordinator input

D5.3 Report (phylogeny)

Report on the Mpox phylogenetic analysis pipeline

D6.1 Training and workshops

Developing training curricula and workshops

Data Management Plan (1)

D1.4 DMP draft

A first draft of our DMP

Publications

Peer reviewed articles (7)

From surveillance to systems: Scaling environmental genomics for epidemic preparedness in Africa

Auteurs: Rolf Lood, Vivi Maketa TV, Paul Kingpriest
Publié dans: Open Access Government, Numéro 51, 2026, ISSN 2516-3817
Éditeur: Adjacent Digital Politics Ltd
DOI: 10.56367/OAG-051-12360

Human pathogen surveillance using a mobile and semi-autonomous environmental workflow

Auteurs: Krolicka, Adriana; Thanh Tam Toan, Tran; Shea, Dylan; Le Tressoler, Alan; Bagi, Andrea; Okoli, Arinze Stanley; Mbachu, Chikwendu
Publié dans: Human pathogen surveillance using a mobile and semi-autonomous environmental workflow, 2024, ISSN 0000-0000
Éditeur: Zenodo
DOI: 10.5281/ZENODO.14209148

Harnessing genomic and bioinformatics for surveillance of pathogens in Africa: a scoping review of existing training and gaps in training

Auteurs: Paul Tunde Kingpriest, John Bok, Palpouguini Lompo, Evodie Ngelesi, Joseph Mwaka, Sainabou Laye Ndure, Nyambura Moremi, Vito Baraka, Tim Van Den Bossche, Sakina Bombaywala, Bart Mesuere, Lennart Martens, Trudie Lang
Publié dans: BMC Infectious Diseases, Numéro 26, 2026, ISSN 1471-2334
Éditeur: Springer Science and Business Media LLC
DOI: 10.1186/S12879-026-13671-2

Strengthening pathogen and antimicrobial resistance surveillance through environmental monitoring in sub-Saharan Africa: stakeholder perspectives

Auteurs: Ananda Tiwari, Taru Miller, Vito Baraka, Marc Christian Tahita, Vivi Maketa, Bérenger Kaboré, Paul Tunde Kingpriest, Patrick Mitashi, Eric Lyimo, Hillary Sebukoto, Ana Maria de Roda Husman, Tarja Pitkänen
Publié dans: International Journal of Hygiene and Environmental Health, Numéro 270, 2026, ISSN 1438-4639
Éditeur: Elsevier BV
DOI: 10.1016/J.IJHEH.2025.114651

Emergence and Global Spread of Mpox Clade Ib: Challenges and the Role of Wastewater and Environmental Surveillance

Auteurs: Ananda Tiwari, Thierry Kalonji, Taru Miller, Tim Van Den Bossche, Adriana Krolicka, Hypolite Muhindo-Mavoko, Patrick Mitashi, Marc Christian Tahita, Rolf Lood, Tarja Pitkänen, Vivi Maketa
Publié dans: The Journal of Infectious Diseases, Numéro 231, 2025, ISSN 0022-1899
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/INFDIS/JIAF006

Project ODIN: advancing environmental genomic surveillance for public health across sub-Saharan Africa

Auteurs: Bonny Baker, José Antonio Baz Lomba, Joseph Bitilinyu-Bangoh, Andreas Berglöf, Sakina Bombaywala, Tracey Calvert-Joshua, Bérenger Kaboré, Paul Kingpriest, Trudie Lang, Joshua I Levy, Palpouguini Lompo, Eric Lyimo, Lennart Martens, Hypolite Muhindo Mavoko, Bart Mesuere, Nyambura Moremi, Nicola Mulder, Sainabou Laye Ndure, Muhammed Ahmed Rameto, Tobias F Rinke de Wit, Hillary Sebukoto, Emily Smith, Marc Christian Tahita, Vivi Maketa Tevuzula, Beth A Tippett Barr, Ananda Tiwari, Tam Tran, Eunice Ubomba-Jaswa, Tim Van Den Bossche, Dawit Wolday, Adriana Krolicka, Vito Baraka, Tarja Pitkänen, Rolf Lood
Publié dans: The Lancet Microbe, Numéro 7, 2026, ISSN 2666-5247
Éditeur: Elsevier BV
DOI: 10.1016/J.LANMIC.2026.101426

Environmental surveillance as a sentinel for emerging outbreaks: Lessons from mpox in Africa

Auteurs: Rolf Lood, Vivi Maketa Tevuzula, Paul Kingpriest
Publié dans: Open Access Government, Numéro 49, 2026, ISSN 2516-3817
Éditeur: Adjacent Digital Politics Ltd
DOI: 10.56367/OAG-049-12345

Monographic books (1)

ODIN Protocol for Environmental Pathogen Surveillance in Sub-Saharan Countries

Auteurs: Taru Miller, null null, Tarja Pitkänen, null null, Outi Nyholm, null null, Kristiina Valkama, null null, Marc Christian Tahita, null null, Vito Baraka, null null, Vivi Maketa, null null, Eric Lyimo, null null, Hillary Sebukoto, null null, Palpouguini Lompo, null null, Melissa Kabena, null null, Adriana Krolicka, null null
Publié dans: ODIN Wastewater Surveillance Project, 2025, ISSN 0000-0000
Éditeur: The Global Health Network
DOI: 10.48060/TGHN.155

Thesis and dissertations (1)

ODIN Laboratory Handbook Standard Operating Procedures for Pre-treatment of Environmental Samples, Pathogen Analytics and Whole Genome Sequencing

Auteurs: Haider Al-Hello, null null, Outi Nyholm, null null, Tarja Pitkänen, null null, Elisa Salmivirta, null null, Anni Vainio, null null, Kristiina Valkama, null null, Vito Baraka, null null, Eric Lyimo, null null, Steven Mnyawonga, null null, Edward Msoma, null null, Hillary Sebukoto, null null, Modest Chuwa, null null, Jackson Claver, null null, Ibrahim Mauki, null null, Nyambura Moremi, null null, Zakaria Garba, null null, Palpouguini Lompo, null null, Yougbaré Sibidou, null null, Marc Tahita, null null, Melissa Kabena Kabengele, null null, Vivi Maketa, null null, Evodie Ngelesi, null null, Mays Kisala, null null, Brigitte Modadra Madakpa, null null, Tavia Bodisa Matamu, null null, Marie-Anne Kavira Muhindo, null null, Michel Ngimba, null null, Pascal Kabuyaya Nzoloka, null null, Esperance Tsiwedi Tsilabia, null null
Publié dans: ODIN Wastewater Surveillance Project, 2025, ISSN 0000-0000
Éditeur: The Global Health Network
DOI: 10.48060/TGHN.154