Implementing wastewater and environmental surveillance for Mpox in Sub-Saharan Africa

Informazioni relative al progetto

ODIN-MPox

ID dell’accordo di sovvenzione: 101195186

DOI

10.3030/101195186

Progetto chiuso

Data della firma CE 7 Agosto 2024

Data di avvio 1 Agosto 2024

Data di completamento 31 Luglio 2026

Finanziato da

• Health

Costo totale

€ 1 378 272,50

Contributo UE

€ 1 378 272,50

Coordinato da

LUNDS UNIVERSITET
Sweden

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Documents, reports (13)

D2.3 Stewardship plan draft

An outline of how to achieve the optimal use of the ODIN intervention

D6.2 Feedback mechanisms

Identify stakeholders, gather feedback, and refine process

D5.2 Report seq data

Report on the data analysis pipeline for Mpox sequencing data

D2.2 Key contact point

Minutes of meetings with global health EDCTP3 JU regarding all scientific actions after 12 months

D7.1 Report (D&E)

Dissemination and Exploitation plan (draft)

D1.2 SAB/PAB

Minutes of SAB/PAB meetings

D5.1 Report qPCR

Report on the data analysis pipeline for Mpox detection data from qPCR

D2.3 Scientific report

Yearly scientific progress report, 12 months

D1.3 Annual report

Annual report of the progress after 12 months

D1.1 Kick-off

Kick-off meeting report

D2.1 Monitoring reports

First monitoring reports with scientific coordinator input

D5.3 Report (phylogeny)

Report on the Mpox phylogenetic analysis pipeline

D6.1 Training and workshops

Developing training curricula and workshops

Data Management Plan (1)

D1.4 DMP draft

A first draft of our DMP

Pubblicazioni

Peer reviewed articles (7)

From surveillance to systems: Scaling environmental genomics for epidemic preparedness in Africa

Autori: Rolf Lood, Vivi Maketa TV, Paul Kingpriest
Pubblicato in: Open Access Government, Numero 51, 2026, ISSN 2516-3817
Editore: Adjacent Digital Politics Ltd
DOI: 10.56367/OAG-051-12360

Human pathogen surveillance using a mobile and semi-autonomous environmental workflow

Autori: Krolicka, Adriana; Thanh Tam Toan, Tran; Shea, Dylan; Le Tressoler, Alan; Bagi, Andrea; Okoli, Arinze Stanley; Mbachu, Chikwendu
Pubblicato in: Human pathogen surveillance using a mobile and semi-autonomous environmental workflow, 2024, ISSN 0000-0000
Editore: Zenodo
DOI: 10.5281/ZENODO.14209148

Harnessing genomic and bioinformatics for surveillance of pathogens in Africa: a scoping review of existing training and gaps in training

Autori: Paul Tunde Kingpriest, John Bok, Palpouguini Lompo, Evodie Ngelesi, Joseph Mwaka, Sainabou Laye Ndure, Nyambura Moremi, Vito Baraka, Tim Van Den Bossche, Sakina Bombaywala, Bart Mesuere, Lennart Martens, Trudie Lang
Pubblicato in: BMC Infectious Diseases, Numero 26, 2026, ISSN 1471-2334
Editore: Springer Science and Business Media LLC
DOI: 10.1186/S12879-026-13671-2

Strengthening pathogen and antimicrobial resistance surveillance through environmental monitoring in sub-Saharan Africa: stakeholder perspectives

Autori: Ananda Tiwari, Taru Miller, Vito Baraka, Marc Christian Tahita, Vivi Maketa, Bérenger Kaboré, Paul Tunde Kingpriest, Patrick Mitashi, Eric Lyimo, Hillary Sebukoto, Ana Maria de Roda Husman, Tarja Pitkänen
Pubblicato in: International Journal of Hygiene and Environmental Health, Numero 270, 2026, ISSN 1438-4639
Editore: Elsevier BV
DOI: 10.1016/J.IJHEH.2025.114651

Emergence and Global Spread of Mpox Clade Ib: Challenges and the Role of Wastewater and Environmental Surveillance

Autori: Ananda Tiwari, Thierry Kalonji, Taru Miller, Tim Van Den Bossche, Adriana Krolicka, Hypolite Muhindo-Mavoko, Patrick Mitashi, Marc Christian Tahita, Rolf Lood, Tarja Pitkänen, Vivi Maketa
Pubblicato in: The Journal of Infectious Diseases, Numero 231, 2025, ISSN 0022-1899
Editore: Oxford University Press (OUP)
DOI: 10.1093/INFDIS/JIAF006

Project ODIN: advancing environmental genomic surveillance for public health across sub-Saharan Africa

Autori: Bonny Baker, José Antonio Baz Lomba, Joseph Bitilinyu-Bangoh, Andreas Berglöf, Sakina Bombaywala, Tracey Calvert-Joshua, Bérenger Kaboré, Paul Kingpriest, Trudie Lang, Joshua I Levy, Palpouguini Lompo, Eric Lyimo, Lennart Martens, Hypolite Muhindo Mavoko, Bart Mesuere, Nyambura Moremi, Nicola Mulder, Sainabou Laye Ndure, Muhammed Ahmed Rameto, Tobias F Rinke de Wit, Hillary Sebukoto, Emily Smith, Marc Christian Tahita, Vivi Maketa Tevuzula, Beth A Tippett Barr, Ananda Tiwari, Tam Tran, Eunice Ubomba-Jaswa, Tim Van Den Bossche, Dawit Wolday, Adriana Krolicka, Vito Baraka, Tarja Pitkänen, Rolf Lood
Pubblicato in: The Lancet Microbe, Numero 7, 2026, ISSN 2666-5247
Editore: Elsevier BV
DOI: 10.1016/J.LANMIC.2026.101426

Environmental surveillance as a sentinel for emerging outbreaks: Lessons from mpox in Africa

Autori: Rolf Lood, Vivi Maketa Tevuzula, Paul Kingpriest
Pubblicato in: Open Access Government, Numero 49, 2026, ISSN 2516-3817
Editore: Adjacent Digital Politics Ltd
DOI: 10.56367/OAG-049-12345

Monographic books (1)

ODIN Protocol for Environmental Pathogen Surveillance in Sub-Saharan Countries

Autori: Taru Miller, null null, Tarja Pitkänen, null null, Outi Nyholm, null null, Kristiina Valkama, null null, Marc Christian Tahita, null null, Vito Baraka, null null, Vivi Maketa, null null, Eric Lyimo, null null, Hillary Sebukoto, null null, Palpouguini Lompo, null null, Melissa Kabena, null null, Adriana Krolicka, null null
Pubblicato in: ODIN Wastewater Surveillance Project, 2025, ISSN 0000-0000
Editore: The Global Health Network
DOI: 10.48060/TGHN.155

Thesis and dissertations (1)

ODIN Laboratory Handbook Standard Operating Procedures for Pre-treatment of Environmental Samples, Pathogen Analytics and Whole Genome Sequencing

Autori: Haider Al-Hello, null null, Outi Nyholm, null null, Tarja Pitkänen, null null, Elisa Salmivirta, null null, Anni Vainio, null null, Kristiina Valkama, null null, Vito Baraka, null null, Eric Lyimo, null null, Steven Mnyawonga, null null, Edward Msoma, null null, Hillary Sebukoto, null null, Modest Chuwa, null null, Jackson Claver, null null, Ibrahim Mauki, null null, Nyambura Moremi, null null, Zakaria Garba, null null, Palpouguini Lompo, null null, Yougbaré Sibidou, null null, Marc Tahita, null null, Melissa Kabena Kabengele, null null, Vivi Maketa, null null, Evodie Ngelesi, null null, Mays Kisala, null null, Brigitte Modadra Madakpa, null null, Tavia Bodisa Matamu, null null, Marie-Anne Kavira Muhindo, null null, Michel Ngimba, null null, Pascal Kabuyaya Nzoloka, null null, Esperance Tsiwedi Tsilabia, null null
Pubblicato in: ODIN Wastewater Surveillance Project, 2025, ISSN 0000-0000
Editore: The Global Health Network
DOI: 10.48060/TGHN.154