Implementing wastewater and environmental surveillance for Mpox in Sub-Saharan Africa

Información del proyecto

ODIN-MPox

Identificador del acuerdo de subvención: 101195186

DOI

10.3030/101195186

Proyecto cerrado

Fecha de la firma de la CE 7 Agosto 2024

Fecha de inicio 1 Agosto 2024

Fecha de finalización 31 Julio 2026

Financiado con arreglo a

• Health

Coste total

€ 1 378 272,50

Aportación de la UE

€ 1 378 272,50

Coordinado por

LUNDS UNIVERSITET
Sweden

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Documents, reports (13)

D2.3 Stewardship plan draft

An outline of how to achieve the optimal use of the ODIN intervention

D6.2 Feedback mechanisms

Identify stakeholders, gather feedback, and refine process

D5.2 Report seq data

Report on the data analysis pipeline for Mpox sequencing data

D2.2 Key contact point

Minutes of meetings with global health EDCTP3 JU regarding all scientific actions after 12 months

D7.1 Report (D&E)

Dissemination and Exploitation plan (draft)

D1.2 SAB/PAB

Minutes of SAB/PAB meetings

D5.1 Report qPCR

Report on the data analysis pipeline for Mpox detection data from qPCR

D2.3 Scientific report

Yearly scientific progress report, 12 months

D1.3 Annual report

Annual report of the progress after 12 months

D1.1 Kick-off

Kick-off meeting report

D2.1 Monitoring reports

First monitoring reports with scientific coordinator input

D5.3 Report (phylogeny)

Report on the Mpox phylogenetic analysis pipeline

D6.1 Training and workshops

Developing training curricula and workshops

Data Management Plan (1)

D1.4 DMP draft

A first draft of our DMP

Publicaciones

Peer reviewed articles (7)

From surveillance to systems: Scaling environmental genomics for epidemic preparedness in Africa

Autores: Rolf Lood, Vivi Maketa TV, Paul Kingpriest
Publicado en: Open Access Government, Edición 51, 2026, ISSN 2516-3817
Editor: Adjacent Digital Politics Ltd
DOI: 10.56367/OAG-051-12360

Human pathogen surveillance using a mobile and semi-autonomous environmental workflow

Autores: Krolicka, Adriana; Thanh Tam Toan, Tran; Shea, Dylan; Le Tressoler, Alan; Bagi, Andrea; Okoli, Arinze Stanley; Mbachu, Chikwendu
Publicado en: Human pathogen surveillance using a mobile and semi-autonomous environmental workflow, 2024, ISSN 0000-0000
Editor: Zenodo
DOI: 10.5281/ZENODO.14209148

Harnessing genomic and bioinformatics for surveillance of pathogens in Africa: a scoping review of existing training and gaps in training

Autores: Paul Tunde Kingpriest, John Bok, Palpouguini Lompo, Evodie Ngelesi, Joseph Mwaka, Sainabou Laye Ndure, Nyambura Moremi, Vito Baraka, Tim Van Den Bossche, Sakina Bombaywala, Bart Mesuere, Lennart Martens, Trudie Lang
Publicado en: BMC Infectious Diseases, Edición 26, 2026, ISSN 1471-2334
Editor: Springer Science and Business Media LLC
DOI: 10.1186/S12879-026-13671-2

Strengthening pathogen and antimicrobial resistance surveillance through environmental monitoring in sub-Saharan Africa: stakeholder perspectives

Autores: Ananda Tiwari, Taru Miller, Vito Baraka, Marc Christian Tahita, Vivi Maketa, Bérenger Kaboré, Paul Tunde Kingpriest, Patrick Mitashi, Eric Lyimo, Hillary Sebukoto, Ana Maria de Roda Husman, Tarja Pitkänen
Publicado en: International Journal of Hygiene and Environmental Health, Edición 270, 2026, ISSN 1438-4639
Editor: Elsevier BV
DOI: 10.1016/J.IJHEH.2025.114651

Emergence and Global Spread of Mpox Clade Ib: Challenges and the Role of Wastewater and Environmental Surveillance

Autores: Ananda Tiwari, Thierry Kalonji, Taru Miller, Tim Van Den Bossche, Adriana Krolicka, Hypolite Muhindo-Mavoko, Patrick Mitashi, Marc Christian Tahita, Rolf Lood, Tarja Pitkänen, Vivi Maketa
Publicado en: The Journal of Infectious Diseases, Edición 231, 2025, ISSN 0022-1899
Editor: Oxford University Press (OUP)
DOI: 10.1093/INFDIS/JIAF006

Project ODIN: advancing environmental genomic surveillance for public health across sub-Saharan Africa

Autores: Bonny Baker, José Antonio Baz Lomba, Joseph Bitilinyu-Bangoh, Andreas Berglöf, Sakina Bombaywala, Tracey Calvert-Joshua, Bérenger Kaboré, Paul Kingpriest, Trudie Lang, Joshua I Levy, Palpouguini Lompo, Eric Lyimo, Lennart Martens, Hypolite Muhindo Mavoko, Bart Mesuere, Nyambura Moremi, Nicola Mulder, Sainabou Laye Ndure, Muhammed Ahmed Rameto, Tobias F Rinke de Wit, Hillary Sebukoto, Emily Smith, Marc Christian Tahita, Vivi Maketa Tevuzula, Beth A Tippett Barr, Ananda Tiwari, Tam Tran, Eunice Ubomba-Jaswa, Tim Van Den Bossche, Dawit Wolday, Adriana Krolicka, Vito Baraka, Tarja Pitkänen, Rolf Lood
Publicado en: The Lancet Microbe, Edición 7, 2026, ISSN 2666-5247
Editor: Elsevier BV
DOI: 10.1016/J.LANMIC.2026.101426

Environmental surveillance as a sentinel for emerging outbreaks: Lessons from mpox in Africa

Autores: Rolf Lood, Vivi Maketa Tevuzula, Paul Kingpriest
Publicado en: Open Access Government, Edición 49, 2026, ISSN 2516-3817
Editor: Adjacent Digital Politics Ltd
DOI: 10.56367/OAG-049-12345

Monographic books (1)

ODIN Protocol for Environmental Pathogen Surveillance in Sub-Saharan Countries

Autores: Taru Miller, null null, Tarja Pitkänen, null null, Outi Nyholm, null null, Kristiina Valkama, null null, Marc Christian Tahita, null null, Vito Baraka, null null, Vivi Maketa, null null, Eric Lyimo, null null, Hillary Sebukoto, null null, Palpouguini Lompo, null null, Melissa Kabena, null null, Adriana Krolicka, null null
Publicado en: ODIN Wastewater Surveillance Project, 2025, ISSN 0000-0000
Editor: The Global Health Network
DOI: 10.48060/TGHN.155

Thesis and dissertations (1)

ODIN Laboratory Handbook Standard Operating Procedures for Pre-treatment of Environmental Samples, Pathogen Analytics and Whole Genome Sequencing

Autores: Haider Al-Hello, null null, Outi Nyholm, null null, Tarja Pitkänen, null null, Elisa Salmivirta, null null, Anni Vainio, null null, Kristiina Valkama, null null, Vito Baraka, null null, Eric Lyimo, null null, Steven Mnyawonga, null null, Edward Msoma, null null, Hillary Sebukoto, null null, Modest Chuwa, null null, Jackson Claver, null null, Ibrahim Mauki, null null, Nyambura Moremi, null null, Zakaria Garba, null null, Palpouguini Lompo, null null, Yougbaré Sibidou, null null, Marc Tahita, null null, Melissa Kabena Kabengele, null null, Vivi Maketa, null null, Evodie Ngelesi, null null, Mays Kisala, null null, Brigitte Modadra Madakpa, null null, Tavia Bodisa Matamu, null null, Marie-Anne Kavira Muhindo, null null, Michel Ngimba, null null, Pascal Kabuyaya Nzoloka, null null, Esperance Tsiwedi Tsilabia, null null
Publicado en: ODIN Wastewater Surveillance Project, 2025, ISSN 0000-0000
Editor: The Global Health Network
DOI: 10.48060/TGHN.154