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Information flow in developmental cell fate patterning

Project description

Decoding how cells navigate noise to decide their fate

How do embryos develop into organised structures when individual cells are inherently ‘noisy’ and unpredictable? The ERC-funded InfoFate project aims to answer this question by studying how these cells collectively process information to create reliable spatial patterns. It will use information theory and computer modeling to track how cells weigh different inputs such as chemical signals from their neighbours or the physical forces from surrounding tissue. By testing these interactions in lab-grown organoids, the researchers can pinpoint the rules that allow a noisy system to produce a perfectly patterned tissue. This research moves beyond simple observation to quantify the actual decision-making process that drives life’s earliest stages.

Objective

Embryonic development relies on the ability of multi-cellular systems to collectively coordinate the establishment of precise spatial patterns of cell fates. An inevitable obstacle to such coordination is intrinsic noise at the single-cell level, which constrains the amount of information accessible to cells for fate decisions. While such information was often considered to be encoded in overall concentrations of extracellular signals, it is becoming increasingly clear that cells use a much broader set of inputs to make decisions. In this project, we will develop a new data-driven theoretical framework of developmental patterning to quantify, characterize and predict how cells generate and process four types of information: dynamical signals, neighborhood interactions, tissue heterogeneity, and mechanical information. We will establish a novel theoretical methodology by uniting computational tissue models that account for single-cell noise with information theory to bridge the scales and relate mechano-chemical inputs to cell fate decisions. We will develop this approach in direct connection with spatio-temporal imaging experiments in two model systems. First, we will determine how regulatory interactions in 2D human gastruloids generate information encoded in complex signaling dynamics, and how single cells can use this information to decide their fate. Second, we will reveal how signaling and mechanics interplay to establish mechano-chemical information in intestinal organoids, driving simultaneous fate patterning and tissue morphogenesis. This project will uncover how cell-cell interactions establish self-organized spatial patterns that relay information accessible to single cells to reliably instruct cell fate decisions, and give insight into the fundamental constraints under which developmental systems operate.

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Programme(s)

Topic(s)

Funding Scheme

HORIZON-ERC - HORIZON ERC Grants

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Call for proposal

(opens in new window) ERC-2025-STG

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Host institution

UNIVERSITAT BASEL
Net EU contribution
€ 1 498 051,00
Address
PETERSPLATZ 1
4051 Basel
Switzerland
Region
Schweiz/Suisse/Svizzera Nordwestschweiz Basel-Stadt
Activity type
Higher or Secondary Education Establishments
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Total cost
€ 1 498 051,00

Beneficiaries (1)